Wall clock time and date at job start Wed Apr 1 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47155 * 239.99994 * 2 1 3 5 5 N 1.46504 * 109.47118 * 120.00047 * 2 1 3 6 6 S 1.65596 * 119.99900 * 37.72184 * 5 2 1 7 7 O 1.42100 * 104.27807 * 304.08983 * 6 5 2 8 8 O 1.42104 * 104.27752 * 176.23188 * 6 5 2 9 9 C 1.81399 * 104.45067 * 60.16181 * 6 5 2 10 10 C 1.50699 * 109.47163 * 171.74473 * 9 6 5 11 11 O 1.21282 * 120.00229 * 359.97438 * 10 9 6 12 12 N 1.34780 * 120.00058 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00138 * 179.97438 * 12 10 9 14 14 C 1.52997 * 110.63906 * 59.30195 * 13 12 10 15 15 C 1.55150 * 110.72242 * 182.44187 * 13 12 10 16 16 C 1.54919 * 101.58130 * 82.86184 * 15 13 12 17 17 N 1.47424 * 104.82624 * 37.01160 * 16 15 13 18 18 C 1.36940 * 125.64099 * 155.91448 * 17 16 15 19 19 H 1.08003 * 119.99729 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00393 * 359.97151 * 18 17 16 21 21 N 1.31620 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47389 * 60.00021 * 22 20 18 24 24 H 1.48508 * 109.47094 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47019 * 299.99736 * 22 20 18 26 26 C 1.47481 * 108.76288 * 335.88874 * 17 16 15 27 27 H 1.09002 * 109.46441 * 299.99804 * 1 2 3 28 28 H 1.08995 * 109.46747 * 59.99425 * 1 2 3 29 29 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47349 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47395 * 300.00354 * 3 2 1 32 32 H 1.09004 * 109.47049 * 59.99967 * 3 2 1 33 33 H 1.09001 * 109.47022 * 296.00351 * 4 2 1 34 34 H 1.08999 * 109.46861 * 55.99893 * 4 2 1 35 35 H 1.08997 * 109.47138 * 175.99701 * 4 2 1 36 36 H 0.96998 * 119.99579 * 217.72167 * 5 2 1 37 37 H 1.09005 * 109.46889 * 291.74254 * 9 6 5 38 38 H 1.08995 * 109.47066 * 51.73796 * 9 6 5 39 39 H 0.96999 * 119.99515 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47248 * 60.70192 * 14 13 12 41 41 H 1.09000 * 109.47333 * 180.70302 * 14 13 12 42 42 H 1.09004 * 109.47391 * 300.70049 * 14 13 12 43 43 H 1.08996 * 111.00696 * 200.93754 * 15 13 12 44 44 H 1.09001 * 111.00646 * 324.79428 * 15 13 12 45 45 H 1.09001 * 110.36228 * 155.84961 * 16 15 13 46 46 H 1.08999 * 110.36854 * 278.17367 * 16 15 13 47 47 H 0.96998 * 119.99808 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.03422 * 241.66629 * 26 17 16 49 49 H 1.08998 * 109.96091 * 120.35211 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 16 1.2249 -2.0299 1.7610 7 8 -0.1115 -1.5886 1.9572 8 8 2.0182 -2.4725 2.8537 9 6 1.3087 -3.2167 0.3917 10 6 0.7950 -4.5555 0.8551 11 8 0.4107 -4.6954 1.9969 12 7 0.7627 -5.5974 0.0008 13 6 0.2639 -6.8991 0.4514 14 6 -1.1820 -6.7833 0.9382 15 6 0.3790 -7.9532 -0.6811 16 6 1.8568 -8.3973 -0.5435 17 7 2.1168 -8.3986 0.9076 18 6 3.0802 -9.1341 1.5450 19 1 3.1915 -9.0646 2.6170 20 6 3.9135 -9.9690 0.8134 21 7 3.7782 -10.0534 -0.4931 22 14 5.2271 -10.9728 1.6831 23 1 4.5856 -11.8800 2.6682 24 1 5.9770 -11.7773 0.6852 25 1 6.1627 -10.0595 2.3872 26 6 1.1687 -7.4765 1.5602 27 1 -0.3632 0.5138 0.8901 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7364 -1.7675 -1.2141 34 1 1.6193 -0.2505 -2.1378 35 1 3.1277 -0.6595 -1.2858 36 1 2.8065 -0.3634 1.6573 37 1 0.6967 -2.8596 -0.4366 38 1 2.3426 -3.3185 0.0619 39 1 1.0705 -5.4856 -0.9123 40 1 -1.8144 -6.4387 0.1200 41 1 -1.5294 -7.7583 1.2802 42 1 -1.2323 -6.0706 1.7614 43 1 -0.2980 -8.7894 -0.5069 44 1 0.1962 -7.5010 -1.6559 45 1 1.9919 -9.3979 -0.9541 46 1 2.5144 -7.6881 -1.0462 47 1 4.3603 -10.6371 -1.0043 48 1 1.7116 -6.6700 2.0532 49 1 0.5640 -8.0180 2.2877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484072323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:00 Heat of formation + Delta-G solvation = -103.326296 kcal Electronic energy + Delta-G solvation = -30573.520752 eV Core-core repulsion = 26469.804264 eV Total energy + Delta-G solvation = -4103.716488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.49580 -39.14692 -39.07694 -38.01561 -37.04784 -35.85182 -33.93632 -32.36011 -31.90922 -30.86339 -30.24210 -28.23829 -28.01843 -27.57344 -25.46134 -22.89147 -22.17504 -21.53050 -20.63535 -20.21603 -19.21989 -18.87354 -17.85137 -17.72681 -17.46367 -17.00877 -16.65963 -16.53776 -15.86796 -15.61973 -15.40803 -15.11962 -14.89847 -14.77653 -14.48415 -14.15174 -14.06848 -13.81080 -13.49032 -13.47674 -13.34559 -13.25146 -13.17773 -13.11049 -12.84709 -12.77581 -12.70375 -12.50114 -12.42926 -12.35514 -12.14843 -12.07175 -12.02594 -11.91940 -11.73040 -11.67382 -11.49310 -11.00548 -10.76078 -10.52983 -10.21570 -8.90866 -7.80553 -5.23776 -0.92229 1.29940 1.44428 1.46956 1.53548 1.65003 1.98796 2.47053 2.78086 3.14966 3.27274 3.32897 3.60637 3.66621 3.71457 3.85871 3.97404 3.97768 4.08548 4.10930 4.13616 4.38020 4.60378 4.65435 4.72200 4.74041 4.82308 4.82517 4.87628 4.91405 4.96904 4.99107 5.05952 5.06131 5.27186 5.29928 5.32734 5.40562 5.47597 5.49187 5.52173 5.62508 5.78481 6.09710 6.29772 6.32351 6.99473 7.10665 7.74615 8.38013 9.20415 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002907 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.264824 B = 9629.085357 C =10068.214417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.189 4.189 5 N -1.101 6.101 6 S 2.648 3.352 7 O -0.970 6.970 8 O -0.996 6.996 9 C -0.665 4.665 10 C 0.532 3.468 11 O -0.577 6.577 12 N -0.684 5.684 13 C 0.165 3.835 14 C -0.147 4.147 15 C -0.125 4.125 16 C 0.153 3.847 17 N -0.624 5.624 18 C -0.246 4.246 19 H 0.067 0.933 20 C -0.058 4.058 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.283 1.283 26 C 0.130 3.870 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.426 0.574 37 H 0.205 0.795 38 H 0.192 0.808 39 H 0.419 0.581 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.077 0.923 46 H -0.002 1.002 47 H 0.250 0.750 48 H 0.008 0.992 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 23.014 -9.284 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.072 3.928 3 C -0.207 4.207 4 C -0.248 4.248 5 N -0.864 5.864 6 S 2.739 3.261 7 O -0.960 6.960 8 O -0.986 6.986 9 C -0.794 4.794 10 C 0.317 3.683 11 O -0.458 6.458 12 N -0.336 5.336 13 C 0.078 3.922 14 C -0.205 4.205 15 C -0.163 4.163 16 C 0.029 3.971 17 N -0.350 5.350 18 C -0.375 4.375 19 H 0.085 0.915 20 C -0.251 4.251 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.004 3.996 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.263 0.737 37 H 0.222 0.778 38 H 0.209 0.791 39 H 0.257 0.743 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.016 0.984 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.511 22.583 -7.792 25.042 hybrid contribution 1.725 -0.776 0.061 1.893 sum -5.785 21.806 -7.732 23.849 Atomic orbital electron populations 1.22676 0.93647 1.03597 1.04321 1.20549 0.93893 0.94686 0.83664 1.22063 1.02213 0.92763 1.03641 1.22750 1.03409 1.01344 0.97255 1.55621 1.45460 1.43832 1.41536 1.03645 0.73800 0.74137 0.74522 1.93584 1.38449 1.79422 1.84516 1.93540 1.71187 1.82587 1.51256 1.31356 1.15024 1.08388 1.24619 1.19734 0.77697 0.85678 0.85183 1.90819 1.50056 1.84996 1.19902 1.45739 1.63813 1.08719 1.15292 1.21283 0.93654 0.82323 0.94953 1.22031 0.92968 1.03101 1.02442 1.23220 0.98135 0.97289 0.97680 1.21804 0.90921 1.00816 0.83585 1.44882 1.37312 1.48666 1.04139 1.19327 1.08697 1.17742 0.91713 0.91532 1.25509 1.01686 1.01325 0.96562 1.69983 1.41353 1.42446 1.05331 0.85185 0.78758 0.78326 0.77232 1.20551 1.21128 1.20977 1.21815 0.91354 0.91622 0.94819 0.92121 0.88312 0.92369 0.90930 0.89158 0.92359 0.91424 0.88712 0.90521 0.73739 0.77825 0.79092 0.74329 0.89674 0.91036 0.92364 0.89680 0.87403 0.90477 0.98446 0.94067 0.97366 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.09 71.98 0.51 -1.91 16 2 C 0.16 1.68 1.16 3.60 0.00 1.69 16 3 C -0.15 -1.08 8.65 71.98 0.62 -0.45 16 4 C -0.19 -1.19 8.61 71.98 0.62 -0.57 16 5 N -1.10 -16.99 5.42 -152.20 -0.82 -17.82 16 6 S 2.65 67.25 4.25 -56.49 -0.24 67.01 16 7 O -0.97 -29.15 14.49 -127.65 -1.85 -31.00 16 8 O -1.00 -36.06 17.75 -124.01 -2.20 -38.26 16 9 C -0.66 -12.64 4.73 71.24 0.34 -12.30 16 10 C 0.53 16.18 7.06 87.66 0.62 16.80 16 11 O -0.58 -23.04 12.56 1.60 0.02 -23.02 16 12 N -0.68 -19.36 5.15 -417.58 -2.15 -21.50 16 13 C 0.16 5.60 0.80 4.79 0.00 5.61 16 14 C -0.15 -4.36 8.41 71.98 0.61 -3.76 16 15 C -0.12 -4.09 6.08 31.99 0.19 -3.89 16 16 C 0.15 7.10 5.87 86.86 0.51 7.61 16 17 N -0.62 -33.01 3.41 -690.80 -2.35 -35.37 16 18 C -0.25 -14.40 10.28 84.03 0.86 -13.53 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 21 N -0.94 -54.78 10.09 21.65 0.22 -54.56 16 22 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 C 0.13 6.01 6.19 86.64 0.54 6.55 16 27 H 0.06 1.05 7.69 -2.39 -0.02 1.03 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.86 5.23 -2.39 -0.01 0.85 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 0.36 4.22 -2.39 -0.01 0.35 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.43 5.45 8.67 -96.75 -0.84 4.61 16 37 H 0.20 1.93 5.79 -2.39 -0.01 1.92 16 38 H 0.19 2.51 7.93 -2.39 -0.02 2.49 16 39 H 0.42 8.77 8.48 -92.71 -0.79 7.98 16 40 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 42 H 0.06 1.97 6.20 -2.38 -0.01 1.95 16 43 H 0.08 2.74 8.05 -2.39 -0.02 2.72 16 44 H 0.11 2.62 8.06 -2.39 -0.02 2.60 16 45 H 0.08 4.10 5.88 -2.39 -0.01 4.09 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 47 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 48 H 0.01 0.43 6.68 -2.39 -0.02 0.41 16 49 H 0.02 1.12 7.80 -2.39 -0.02 1.10 16 Total: -1.00 -86.66 384.46 -2.11 -88.77 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.65 Total: 18.31 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.89 Total: -1.01 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -5.11 Total: -129.25 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.03 Total: -92.29 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 67.25 SS G_CDS: -0.24 Total: 67.01 kcal Total: -86.66 -2.11 -88.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484072323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.557 kcal (2) G-P(sol) polarization free energy of solvation -86.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds