Wall clock time and date at job start Wed Apr 1 2020 04:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42907 * 113.99703 * 2 1 4 4 C 1.50694 * 109.46895 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99977 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00402 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00512 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47138 * 179.97438 * 7 6 4 9 9 C 1.38262 * 119.99774 * 90.00219 * 8 7 6 10 10 C 1.38218 * 120.00246 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.02734 * 359.97438 * 10 9 8 12 12 C 1.38440 * 119.97532 * 0.02562 * 11 10 9 13 13 C 1.38179 * 119.96418 * 359.95637 * 12 11 10 14 14 C 1.51179 * 108.25580 * 179.97438 * 12 11 10 15 15 N 1.48050 * 105.67744 * 342.50672 * 14 12 11 16 16 C 1.46897 * 111.00219 * 146.96014 * 15 14 12 17 17 C 1.50702 * 109.47134 * 175.12230 * 16 15 14 18 18 O 1.21292 * 119.99899 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00422 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00340 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99944 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99821 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00471 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99936 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46574 * 60.00356 * 24 22 20 26 26 H 1.48500 * 109.46941 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47168 * 300.00388 * 24 22 20 28 28 C 1.48056 * 103.88562 * 27.59793 * 15 14 12 29 29 H 1.08998 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46568 * 299.99560 * 1 2 3 31 31 H 1.08997 * 109.47271 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.46935 * 60.00325 * 3 2 1 33 33 H 1.08993 * 109.47112 * 300.00563 * 3 2 1 34 34 H 0.97004 * 119.99220 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47157 * 59.99860 * 7 6 4 36 36 H 1.08995 * 109.47220 * 300.00182 * 7 6 4 37 37 H 1.08000 * 119.99736 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.98431 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.99156 * 179.97438 * 13 12 11 40 40 H 1.08997 * 110.21313 * 223.44884 * 14 12 11 41 41 H 1.09005 * 110.20660 * 101.55399 * 14 12 11 42 42 H 1.09000 * 109.47731 * 295.12068 * 16 15 14 43 43 H 1.09001 * 109.47355 * 55.12212 * 16 15 14 44 44 H 0.97002 * 119.99324 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00656 * 180.02562 * 23 22 20 46 46 H 1.09002 * 110.20516 * 91.44420 * 28 15 14 47 47 H 1.08996 * 110.21030 * 213.34217 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7369 2.1813 -0.0014 8 6 6.3498 3.5580 -0.0013 9 6 6.6319 4.1890 1.1962 10 6 7.1935 5.4519 1.1964 11 6 7.4738 6.0842 0.0002 12 6 7.1914 5.4525 -1.1988 13 6 6.6302 4.1898 -1.1983 14 6 7.5993 6.3729 -2.3266 15 7 7.7288 7.7169 -1.7192 16 6 8.7887 8.4922 -2.3774 17 6 8.8110 9.8904 -1.8156 18 8 8.0213 10.2097 -0.9521 19 7 9.7078 10.7865 -2.2733 20 6 9.7284 12.0582 -1.7618 21 1 9.0258 12.3423 -0.9924 22 6 10.6533 12.9818 -2.2333 23 7 11.5079 12.6363 -3.1699 24 14 10.6810 14.7149 -1.5369 25 1 10.9440 14.6573 -0.0766 26 1 11.7520 15.4989 -2.2028 27 1 9.3685 15.3663 -1.7782 28 6 8.0753 7.4367 -0.3072 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8593 3.1726 0.0001 35 1 6.0578 1.6411 -0.8921 36 1 6.0592 1.6396 0.8878 37 1 6.4126 3.6953 2.1314 38 1 7.4134 5.9447 2.1320 39 1 6.4093 3.6967 -2.1335 40 1 6.8326 6.3822 -3.1013 41 1 8.5544 6.0553 -2.7451 42 1 9.7522 8.0142 -2.2003 43 1 8.5957 8.5344 -3.4494 44 1 10.3386 10.5314 -2.9646 45 1 12.1539 13.2809 -3.4988 46 1 9.1579 7.4041 -0.1846 47 1 7.6447 8.1972 0.3441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484872608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:08 Heat of formation + Delta-G solvation = -69.223334 kcal Electronic energy + Delta-G solvation = -28590.036448 eV Core-core repulsion = 24352.354825 eV Total energy + Delta-G solvation = -4237.681624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68553 -40.03055 -38.44175 -37.87606 -36.89592 -34.93473 -33.91291 -31.98732 -31.57985 -31.19367 -29.70255 -28.04265 -27.51711 -26.44490 -25.24966 -24.33686 -22.60470 -21.28889 -21.05303 -20.73145 -19.22802 -17.92088 -17.85478 -17.26117 -16.79657 -16.38776 -16.05698 -15.99343 -15.84124 -15.35289 -15.10606 -14.95550 -14.55349 -14.42243 -14.23885 -13.86092 -13.59117 -13.50515 -13.41539 -13.10902 -12.98597 -12.61819 -12.46584 -12.39273 -12.17088 -11.97450 -11.91092 -11.53743 -11.36457 -11.24456 -10.98600 -10.93074 -10.46511 -10.30420 -10.24337 -10.23803 -9.52215 -9.49248 -9.06015 -8.96979 -8.45319 -8.03550 -7.97369 -6.44454 -3.85499 0.98407 1.19080 2.22803 2.48049 3.17923 3.24070 3.28092 3.46528 3.72925 3.84529 3.91895 4.16893 4.21445 4.31540 4.46632 4.55411 4.60332 4.64693 4.78729 4.84022 4.88101 4.93962 5.06356 5.19603 5.19995 5.22410 5.29998 5.35215 5.41189 5.51831 5.58195 5.70070 5.73839 5.85070 5.90753 5.95954 6.08620 6.20755 6.22125 6.29503 6.46467 6.49767 6.76250 6.94142 7.06557 7.08387 7.52264 7.82217 8.02358 8.58167 9.14883 9.50546 10.02108 10.73126 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.001504 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.352874 B =18616.674009 C =18783.294264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.513 3.487 5 O -0.521 6.521 6 N -0.725 5.725 7 C 0.169 3.831 8 C -0.119 4.119 9 C -0.098 4.098 10 C -0.103 4.103 11 C -0.080 4.080 12 C -0.102 4.102 13 C -0.080 4.080 14 C 0.072 3.928 15 N -0.477 5.477 16 C 0.034 3.966 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.078 3.922 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.404 0.596 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.060 0.940 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -21.432 4.263 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.038 4.038 4 C 0.298 3.702 5 O -0.395 6.395 6 N -0.379 5.379 7 C 0.046 3.954 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.122 4.122 11 C -0.081 4.081 12 C -0.103 4.103 13 C -0.099 4.099 14 C -0.056 4.056 15 N -0.200 5.200 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.049 4.049 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.640 -21.747 4.676 26.629 hybrid contribution 0.898 1.081 -0.159 1.415 sum -13.741 -20.665 4.517 25.225 Atomic orbital electron populations 1.22858 0.80173 1.03431 1.00259 1.88017 1.19947 1.25129 1.95455 1.22242 0.91517 0.87127 1.02877 1.20279 0.88722 0.84525 0.76693 1.90748 1.74610 1.26476 1.47690 1.46006 1.06815 1.08928 1.76162 1.20128 0.78598 0.93389 1.03262 1.19612 1.02974 0.96004 0.93385 1.20952 0.98620 0.94645 0.97389 1.20517 0.99541 0.94833 0.97261 1.20901 0.97169 0.96425 0.93559 1.20602 0.99246 0.94559 0.95869 1.20324 0.98419 0.93546 0.97597 1.21713 1.00940 0.87442 0.95490 1.65028 1.41893 1.11558 1.01566 1.22181 0.92842 0.94857 0.99892 1.19622 0.84635 0.86192 0.86707 1.90515 1.41792 1.79615 1.34244 1.41836 1.30895 1.10820 1.36407 1.19648 1.16853 0.86454 1.20025 0.87939 1.25253 0.95777 1.00310 0.96480 1.69598 1.19944 1.36464 1.28269 0.85919 0.77922 0.81432 0.78961 1.19915 1.20966 1.19878 1.21730 0.98490 0.92938 0.91715 0.89006 0.93698 0.93678 0.90065 0.90033 0.76154 0.90482 0.90440 0.85661 0.85604 0.85903 0.89051 0.92101 0.92854 0.88775 0.77477 0.91793 0.92186 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.42 10.24 -55.14 -0.56 -3.98 16 3 C 0.04 0.28 6.42 36.00 0.23 0.51 16 4 C 0.51 4.86 7.91 -10.99 -0.09 4.77 16 5 O -0.52 -7.39 16.50 -14.36 -0.24 -7.62 16 6 N -0.72 -5.27 5.55 -61.48 -0.34 -5.61 16 7 C 0.17 1.37 5.80 -5.20 -0.03 1.34 16 8 C -0.12 -1.05 5.25 -104.62 -0.55 -1.60 16 9 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 10 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 16 11 C -0.08 -1.04 6.26 -104.33 -0.65 -1.69 16 12 C -0.10 -1.23 6.26 -104.33 -0.65 -1.88 16 13 C -0.08 -0.78 9.70 -39.61 -0.38 -1.16 16 14 C 0.07 0.90 6.61 -4.11 -0.03 0.87 16 15 N -0.48 -7.82 5.17 -236.36 -1.22 -9.04 16 16 C 0.03 0.58 5.12 -4.98 -0.03 0.56 16 17 C 0.44 10.19 7.58 -10.98 -0.08 10.10 16 18 O -0.58 -15.23 14.65 5.55 0.08 -15.15 16 19 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 20 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 24 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.08 1.24 5.68 -4.10 -0.02 1.21 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 2.11 8.46 -40.82 -0.35 1.76 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.69 7.81 -51.93 -0.41 0.28 16 42 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 43 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 44 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.06 0.94 7.61 -51.93 -0.40 0.54 16 47 H 0.11 1.94 7.37 -51.93 -0.38 1.56 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -35.00 399.60 -9.65 -44.65 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.84 Total: 8.75 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.20 Total: 3.67 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.90 Total: -52.04 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.72 Total: -26.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.00 -9.65 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484872608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.576 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds