Wall clock time and date at job start Wed Apr 1 2020 04:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42907 * 113.99703 * 2 1 4 4 C 1.50694 * 109.46895 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99977 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00402 * 180.02562 * 4 3 2 7 7 C 1.46493 * 120.00512 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47138 * 179.97438 * 7 6 4 9 9 C 1.38262 * 119.99774 * 90.00219 * 8 7 6 10 10 C 1.38218 * 120.00246 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.02734 * 359.97438 * 10 9 8 12 12 C 1.38440 * 119.97532 * 0.02562 * 11 10 9 13 13 C 1.38179 * 119.96418 * 359.95637 * 12 11 10 14 14 C 1.51179 * 108.25580 * 179.97438 * 12 11 10 15 15 N 1.48050 * 105.67744 * 342.50672 * 14 12 11 16 16 C 1.46897 * 111.00219 * 146.96014 * 15 14 12 17 17 C 1.50702 * 109.47134 * 175.12230 * 16 15 14 18 18 O 1.21292 * 119.99899 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00422 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00340 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99944 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99821 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00471 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99936 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46574 * 60.00356 * 24 22 20 26 26 H 1.48500 * 109.46941 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47168 * 300.00388 * 24 22 20 28 28 C 1.48056 * 103.88562 * 27.59793 * 15 14 12 29 29 H 1.08998 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46568 * 299.99560 * 1 2 3 31 31 H 1.08997 * 109.47271 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.46935 * 60.00325 * 3 2 1 33 33 H 1.08993 * 109.47112 * 300.00563 * 3 2 1 34 34 H 0.97004 * 119.99220 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47157 * 59.99860 * 7 6 4 36 36 H 1.08995 * 109.47220 * 300.00182 * 7 6 4 37 37 H 1.08000 * 119.99736 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.98431 * 179.97438 * 10 9 8 39 39 H 1.08003 * 119.99156 * 179.97438 * 13 12 11 40 40 H 1.08997 * 110.21313 * 223.44884 * 14 12 11 41 41 H 1.09005 * 110.20660 * 101.55399 * 14 12 11 42 42 H 1.09000 * 109.47731 * 295.12068 * 16 15 14 43 43 H 1.09001 * 109.47355 * 55.12212 * 16 15 14 44 44 H 0.97002 * 119.99324 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00656 * 180.02562 * 23 22 20 46 46 H 1.09002 * 110.20516 * 91.44420 * 28 15 14 47 47 H 1.08996 * 110.21030 * 213.34217 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7369 2.1813 -0.0014 8 6 6.3498 3.5580 -0.0013 9 6 6.6319 4.1890 1.1962 10 6 7.1935 5.4519 1.1964 11 6 7.4738 6.0842 0.0002 12 6 7.1914 5.4525 -1.1988 13 6 6.6302 4.1898 -1.1983 14 6 7.5993 6.3729 -2.3266 15 7 7.7288 7.7169 -1.7192 16 6 8.7887 8.4922 -2.3774 17 6 8.8110 9.8904 -1.8156 18 8 8.0213 10.2097 -0.9521 19 7 9.7078 10.7865 -2.2733 20 6 9.7284 12.0582 -1.7618 21 1 9.0258 12.3423 -0.9924 22 6 10.6533 12.9818 -2.2333 23 7 11.5079 12.6363 -3.1699 24 14 10.6810 14.7149 -1.5369 25 1 10.9440 14.6573 -0.0766 26 1 11.7520 15.4989 -2.2028 27 1 9.3685 15.3663 -1.7782 28 6 8.0753 7.4367 -0.3072 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8593 3.1726 0.0001 35 1 6.0578 1.6411 -0.8921 36 1 6.0592 1.6396 0.8878 37 1 6.4126 3.6953 2.1314 38 1 7.4134 5.9447 2.1320 39 1 6.4093 3.6967 -2.1335 40 1 6.8326 6.3822 -3.1013 41 1 8.5544 6.0553 -2.7451 42 1 9.7522 8.0142 -2.2003 43 1 8.5957 8.5344 -3.4494 44 1 10.3386 10.5314 -2.9646 45 1 12.1539 13.2809 -3.4988 46 1 9.1579 7.4041 -0.1846 47 1 7.6447 8.1972 0.3441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484872608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:07 Heat of formation + Delta-G solvation = -95.777151 kcal Electronic energy + Delta-G solvation = -28591.187908 eV Core-core repulsion = 24352.354825 eV Total energy + Delta-G solvation = -4238.833083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.62472 -40.80785 -40.01613 -38.54492 -37.99233 -35.99941 -35.65897 -33.33960 -32.80571 -32.46725 -30.40826 -28.95035 -28.68216 -27.16825 -26.52214 -25.49183 -23.69862 -22.31286 -21.72907 -21.56620 -21.00479 -19.88183 -18.51410 -17.88094 -17.80786 -17.37379 -17.17018 -16.99972 -16.69619 -16.46437 -16.13914 -16.03474 -15.72191 -15.53946 -15.51641 -15.17929 -14.75764 -14.65418 -14.08461 -14.02831 -13.98799 -13.69666 -13.68351 -13.47583 -13.14884 -13.06113 -13.01306 -12.95537 -12.50224 -12.42932 -12.34835 -12.19519 -12.12344 -11.77757 -11.48761 -11.00631 -10.75926 -10.37909 -10.17387 -10.01560 -9.93174 -9.79651 -9.16903 -8.46264 -5.94994 0.15299 0.38778 1.39846 1.42040 1.52674 1.54698 1.89332 2.04660 2.28055 2.70953 2.73202 3.18392 3.20476 3.24725 3.44986 3.53329 3.72188 3.81444 4.03894 4.15540 4.22296 4.22826 4.28919 4.33155 4.38357 4.45088 4.50273 4.51911 4.53192 4.58701 4.59405 4.67310 4.72042 4.85567 4.88861 4.99885 5.09279 5.31094 5.36252 5.40956 5.50618 5.54218 5.75962 5.84627 5.94844 6.04308 6.04612 6.51227 6.60542 7.12952 7.18383 7.55921 8.11743 8.70820 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.001504 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.352874 B =18616.674009 C =18783.294264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.042 3.958 4 C 0.510 3.490 5 O -0.575 6.575 6 N -0.711 5.711 7 C 0.172 3.828 8 C -0.105 4.105 9 C -0.091 4.091 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.110 4.110 13 C -0.075 4.075 14 C 0.074 3.926 15 N -0.502 5.502 16 C 0.047 3.953 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.083 3.917 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.052 0.948 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 -22.417 3.897 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.297 3.703 5 O -0.454 6.454 6 N -0.365 5.365 7 C 0.049 3.951 8 C -0.105 4.105 9 C -0.109 4.109 10 C -0.127 4.127 11 C -0.105 4.105 12 C -0.110 4.110 13 C -0.094 4.094 14 C -0.053 4.053 15 N -0.225 5.225 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.045 4.045 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.583 -22.713 4.293 27.877 hybrid contribution 1.122 1.320 -0.010 1.733 sum -14.460 -21.393 4.283 26.175 Atomic orbital electron populations 1.23028 0.78327 1.04126 1.01641 1.87959 1.22093 1.26860 1.95810 1.22402 0.89194 0.86730 1.05371 1.20866 0.90095 0.83917 0.75423 1.90724 1.75738 1.28499 1.50471 1.45886 1.06431 1.09199 1.74985 1.20058 0.79058 0.92671 1.03301 1.19669 1.01887 0.95897 0.93055 1.21186 0.97389 0.93736 0.98586 1.20691 0.99560 0.95566 0.96894 1.20761 0.99183 0.95472 0.95094 1.20618 1.00068 0.95359 0.94969 1.20513 0.97436 0.92613 0.98850 1.21755 1.02282 0.85428 0.95801 1.64924 1.41593 1.14009 1.01995 1.22033 0.94479 0.91184 1.00701 1.20670 0.82964 0.88033 0.85530 1.90489 1.43022 1.80904 1.35830 1.41895 1.31680 1.10585 1.36832 1.19620 1.17639 0.88306 1.20821 0.90324 1.26003 0.94951 1.03596 0.96503 1.69658 1.20071 1.37688 1.28628 0.85010 0.78153 0.76976 0.78334 1.19741 1.19494 1.19763 1.21501 0.97991 0.93797 0.91209 0.88833 0.92238 0.92283 0.87344 0.87414 0.74651 0.90626 0.90440 0.83331 0.84970 0.83839 0.87669 0.90489 0.90784 0.86349 0.76967 0.91297 0.93006 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.06 10.24 -129.94 -1.33 -8.39 16 3 C 0.04 0.46 6.42 71.23 0.46 0.91 16 4 C 0.51 8.81 7.91 87.65 0.69 9.50 16 5 O -0.58 -16.08 16.50 15.99 0.26 -15.82 16 6 N -0.71 -8.54 5.55 -466.81 -2.59 -11.13 16 7 C 0.17 2.37 5.80 85.63 0.50 2.87 16 8 C -0.10 -1.56 5.25 -19.86 -0.10 -1.66 16 9 C -0.09 -1.42 9.70 22.27 0.22 -1.21 16 10 C -0.11 -2.25 10.04 22.25 0.22 -2.03 16 11 C -0.10 -2.68 6.26 -19.68 -0.12 -2.80 16 12 C -0.11 -2.44 6.26 -19.68 -0.12 -2.56 16 13 C -0.08 -1.26 9.70 22.25 0.22 -1.05 16 14 C 0.07 1.73 6.61 85.49 0.56 2.29 16 15 N -0.50 -16.32 5.17 -901.70 -4.66 -20.97 16 16 C 0.05 1.60 5.12 85.56 0.44 2.04 16 17 C 0.44 20.78 7.58 87.66 0.66 21.45 16 18 O -0.62 -33.92 14.65 -3.07 -0.04 -33.97 16 19 N -0.57 -29.04 5.29 -306.99 -1.62 -30.66 16 20 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 23 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.08 2.69 5.68 85.49 0.49 3.18 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.42 3.02 8.46 -92.71 -0.78 2.23 16 35 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 1.55 7.81 -2.38 -0.02 1.53 16 42 H 0.07 2.21 7.82 -2.39 -0.02 2.19 16 43 H 0.12 3.43 8.13 -2.39 -0.02 3.41 16 44 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 45 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 46 H 0.05 1.69 7.61 -2.39 -0.02 1.68 16 47 H 0.07 2.74 7.37 -2.39 -0.02 2.72 16 Total: -1.00 -78.88 399.60 -1.54 -80.42 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.51 Total: 30.49 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.63 Total: 14.28 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -8.59 Total: -111.59 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -1.11 Total: -58.17 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.88 -1.54 -80.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484872608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.357 kcal (2) G-P(sol) polarization free energy of solvation -78.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds