Wall clock time and date at job start Wed Apr 1 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47002 * 180.02562 * 3 2 1 5 5 S 1.81392 * 109.47335 * 179.97438 * 4 3 2 6 6 O 1.42099 * 110.54334 * 68.37150 * 5 4 3 7 7 O 1.42099 * 110.54388 * 291.62219 * 5 4 3 8 8 N 1.65603 * 104.45170 * 179.97438 * 5 4 3 9 9 C 1.46493 * 119.99911 * 65.00098 * 8 5 4 10 10 C 1.50693 * 109.47314 * 165.00063 * 9 8 5 11 11 O 1.21286 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00550 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99795 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00541 * 179.97438 * 12 10 9 15 15 C 1.53784 * 113.61569 * 240.00166 * 14 12 10 16 16 C 1.53787 * 87.07923 * 220.01663 * 15 14 12 17 17 N 1.46501 * 113.61128 * 139.98386 * 16 15 14 18 18 C 1.36937 * 119.99940 * 155.00138 * 17 16 15 19 19 H 1.07995 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99758 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99806 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00158 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46684 * 90.00571 * 22 20 18 24 24 H 1.48500 * 109.47059 * 210.00196 * 22 20 18 25 25 H 1.48494 * 109.47062 * 330.00402 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 14 12 10 27 27 H 1.09004 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47548 * 300.00444 * 1 2 3 29 29 H 1.09005 * 109.46737 * 60.00297 * 1 2 3 30 30 H 1.08998 * 109.47548 * 239.99556 * 2 1 3 31 31 H 1.09005 * 109.46737 * 119.99703 * 2 1 3 32 32 H 1.08993 * 109.47280 * 59.99895 * 3 2 1 33 33 H 1.09000 * 109.47087 * 299.99003 * 3 2 1 34 34 H 1.08998 * 109.47548 * 59.99556 * 4 3 2 35 35 H 1.09005 * 109.46737 * 299.99703 * 4 3 2 36 36 H 0.96997 * 119.99651 * 245.00130 * 8 5 4 37 37 H 1.08999 * 109.47521 * 44.99860 * 9 8 5 38 38 H 1.08999 * 109.47088 * 285.00240 * 9 8 5 39 39 H 1.09004 * 109.46666 * 269.99777 * 13 12 10 40 40 H 1.08999 * 109.47266 * 29.99467 * 13 12 10 41 41 H 1.08995 * 109.47412 * 150.00054 * 13 12 10 42 42 H 1.09002 * 112.90477 * 11.25212 * 14 12 10 43 43 H 1.09004 * 113.61451 * 105.47149 * 15 14 12 44 44 H 1.08994 * 113.61477 * 334.56451 * 15 14 12 45 45 H 1.09000 * 113.61529 * 270.88430 * 16 15 14 46 46 H 0.97005 * 120.00129 * 334.99728 * 17 16 15 47 47 H 0.97000 * 120.00182 * 179.97438 * 21 20 18 48 48 H 1.09006 * 113.61307 * 25.43652 * 26 14 12 49 49 H 1.09007 * 113.61642 * 254.53409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8790 3.7867 1.2355 7 8 3.8781 3.7859 -1.2385 8 7 5.8244 3.0077 -0.0013 9 6 6.5071 2.4090 -1.1509 10 6 7.9796 2.7207 -1.0789 11 8 8.4159 3.3787 -0.1581 12 7 8.8120 2.2684 -2.0375 13 6 8.2850 1.4740 -3.1500 14 6 10.2435 2.5718 -1.9678 15 6 10.7652 3.3630 -3.1789 16 6 12.0208 2.4772 -3.1172 17 7 12.5178 2.0711 -4.4341 18 6 13.8377 1.7448 -4.5971 19 1 14.5123 1.7872 -3.7549 20 6 14.3084 1.3595 -5.8448 21 7 15.5769 1.0453 -6.0014 22 14 13.1412 1.2854 -7.3015 23 1 13.1244 2.6013 -7.9896 24 1 13.5979 0.2372 -8.2490 25 1 11.7736 0.9591 -6.8238 26 6 11.1420 1.4150 -2.4359 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 6.3385 3.3192 0.7599 37 1 6.0937 2.8183 -2.0727 38 1 6.3632 1.3286 -1.1366 39 1 8.3096 0.4169 -2.8853 40 1 7.2572 1.7733 -3.3554 41 1 8.8961 1.6407 -4.0370 42 1 10.5411 2.9953 -1.0085 43 1 10.9608 4.4134 -2.9629 44 1 10.1731 3.2188 -4.0826 45 1 12.8044 2.8748 -2.4721 46 1 11.9118 2.0333 -5.1907 47 1 15.9058 0.7757 -6.8732 48 1 10.6529 0.7382 -3.1366 49 1 11.6418 0.8926 -1.6201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486481489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:16 Heat of formation + Delta-G solvation = -76.642712 kcal Electronic energy + Delta-G solvation = -28392.040897 eV Core-core repulsion = 24289.481496 eV Total energy + Delta-G solvation = -4102.559401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.45678 -38.41601 -37.51379 -36.46493 -36.28424 -35.11886 -35.06752 -33.18323 -31.08197 -30.65684 -27.78929 -27.25752 -25.32195 -24.94728 -24.38749 -22.15168 -21.91384 -20.00883 -19.74322 -19.09687 -18.30859 -17.50021 -17.26680 -17.01646 -16.69408 -16.32014 -16.12575 -15.81264 -15.14750 -14.79758 -14.59167 -14.41000 -14.01839 -13.91416 -13.74170 -13.43397 -13.25121 -13.04985 -12.76154 -12.52766 -12.51110 -12.42007 -12.40955 -12.31918 -12.24523 -12.17807 -12.01802 -11.87099 -11.81095 -11.27241 -11.06713 -11.01513 -10.79908 -10.62043 -10.28437 -10.20104 -10.08150 -9.86923 -9.63636 -8.99236 -8.69439 -7.35895 -5.84785 -3.21324 -0.23508 2.17791 2.32659 2.82363 3.28798 3.31214 3.32668 3.38948 3.69482 3.90437 4.06621 4.17815 4.33300 4.50788 4.54368 4.61796 4.69559 4.81347 4.88009 4.88689 4.91907 4.94464 5.02208 5.09652 5.16107 5.19284 5.27299 5.27888 5.35936 5.46256 5.48474 5.56493 5.59864 5.68725 5.70466 5.95292 6.05811 6.11619 6.19201 6.39389 6.53696 6.57595 6.81767 7.24670 7.89540 7.91367 8.34486 9.11465 9.83716 10.02869 11.33244 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.001902 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.137113 B =14717.129208 C =15504.647147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.631 4.631 5 S 2.613 3.387 6 O -0.952 6.952 7 O -0.953 6.953 8 N -1.109 6.109 9 C 0.095 3.905 10 C 0.511 3.489 11 O -0.534 6.534 12 N -0.595 5.595 13 C 0.067 3.933 14 C 0.116 3.884 15 C -0.166 4.166 16 C 0.176 3.824 17 N -0.733 5.733 18 C -0.251 4.251 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.174 4.174 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.428 0.572 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.082 0.918 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.803 -2.857 11.700 32.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.760 4.760 5 S 2.706 3.294 6 O -0.942 6.942 7 O -0.943 6.943 8 N -0.871 5.871 9 C -0.036 4.036 10 C 0.297 3.703 11 O -0.411 6.411 12 N -0.327 5.327 13 C -0.076 4.076 14 C 0.013 3.987 15 C -0.207 4.207 16 C 0.063 3.937 17 N -0.373 5.373 18 C -0.381 4.381 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.216 4.216 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.266 0.734 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.195 0.805 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.829 -1.802 12.024 32.211 hybrid contribution -0.327 -0.907 -0.982 1.376 sum -30.156 -2.709 11.042 32.228 Atomic orbital electron populations 1.21820 0.95323 1.02131 1.02245 1.21481 0.96225 0.95089 1.02728 1.21387 0.89962 1.00112 1.03886 1.30659 1.07013 1.26355 1.12005 1.04959 0.72745 0.77256 0.74483 1.93626 1.82771 1.72828 1.44995 1.93615 1.83178 1.71941 1.45573 1.55407 1.25862 1.77973 1.27885 1.21179 0.92442 0.99295 0.90644 1.20306 0.87921 0.79749 0.82310 1.90694 1.77221 1.39196 1.33984 1.47839 1.08390 1.52471 1.24042 1.21905 0.99695 0.95559 0.90421 1.22663 0.77301 0.98662 1.00068 1.23965 0.99152 0.99930 0.97613 1.21321 0.92099 0.92006 0.88234 1.42692 1.08434 1.80782 1.05385 1.19139 0.84288 1.38203 0.96436 0.89027 1.24704 0.95790 1.01240 0.97278 1.69700 1.12970 1.51678 1.23445 0.86546 0.80559 0.77648 0.83660 1.21017 1.21687 1.20425 1.24299 0.98275 0.98043 1.00939 0.92317 0.92425 0.92384 0.91418 0.91466 0.90167 0.90129 0.84851 0.84562 0.73358 0.87178 0.88741 0.91878 0.91022 0.89822 0.86426 0.91242 0.90209 0.89332 0.80502 0.92965 0.89929 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.62 16 3 C -0.11 -0.53 5.22 -26.73 -0.14 -0.67 16 4 C -0.63 -2.55 6.07 37.16 0.23 -2.32 16 5 S 2.61 20.67 5.46 -107.50 -0.59 20.08 16 6 O -0.95 -10.82 18.08 -57.54 -1.04 -11.86 16 7 O -0.95 -10.52 17.50 -57.54 -1.01 -11.52 16 8 N -1.11 -9.05 5.82 -11.66 -0.07 -9.12 16 9 C 0.09 0.70 5.16 -5.20 -0.03 0.68 16 10 C 0.51 5.86 7.74 -10.99 -0.09 5.78 16 11 O -0.53 -8.00 15.21 5.55 0.08 -7.92 16 12 N -0.60 -6.63 3.08 -173.00 -0.53 -7.16 16 13 C 0.07 0.54 8.84 59.85 0.53 1.07 16 14 C 0.12 1.56 4.20 -67.12 -0.28 1.28 16 15 C -0.17 -2.43 7.37 -25.91 -0.19 -2.62 16 16 C 0.18 3.10 4.48 -67.12 -0.30 2.80 16 17 N -0.73 -16.26 5.21 -52.64 -0.27 -16.53 16 18 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 19 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 22 Si 0.89 21.19 27.74 -169.99 -4.71 16.47 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 26 C -0.17 -2.58 7.30 -25.92 -0.19 -2.77 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 35 H 0.14 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.43 3.92 7.66 -34.47 -0.26 3.66 16 37 H 0.11 0.70 6.96 -51.93 -0.36 0.34 16 38 H 0.09 0.35 8.11 -51.93 -0.42 -0.08 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16 41 H 0.08 0.77 6.33 -51.93 -0.33 0.44 16 42 H 0.12 1.68 7.24 -51.93 -0.38 1.31 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.12 6.89 -51.93 -0.36 0.77 16 45 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 46 H 0.36 7.81 5.79 -40.82 -0.24 7.57 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -37.31 405.31 -9.87 -47.18 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.11 Total: 6.54 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.50 Total: -4.53 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.10 Total: -60.55 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.96 Total: -31.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.47 kcal Atomic # 16 Polarization: 20.67 SS G_CDS: -0.59 Total: 20.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.31 -9.87 -47.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486481489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.463 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds