Wall clock time and date at job start Wed Apr 1 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47002 * 180.02562 * 3 2 1 5 5 S 1.81392 * 109.47335 * 179.97438 * 4 3 2 6 6 O 1.42099 * 110.54334 * 68.37150 * 5 4 3 7 7 O 1.42099 * 110.54388 * 291.62219 * 5 4 3 8 8 N 1.65603 * 104.45170 * 179.97438 * 5 4 3 9 9 C 1.46493 * 119.99911 * 65.00098 * 8 5 4 10 10 C 1.50693 * 109.47314 * 165.00063 * 9 8 5 11 11 O 1.21286 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00550 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99795 * 0.02562 * 12 10 9 14 14 C 1.46497 * 120.00541 * 179.97438 * 12 10 9 15 15 C 1.53784 * 113.61569 * 240.00166 * 14 12 10 16 16 C 1.53787 * 87.07923 * 220.01663 * 15 14 12 17 17 N 1.46501 * 113.61128 * 139.98386 * 16 15 14 18 18 C 1.36937 * 119.99940 * 155.00138 * 17 16 15 19 19 H 1.07995 * 119.99838 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99758 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99806 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00158 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46684 * 90.00571 * 22 20 18 24 24 H 1.48500 * 109.47059 * 210.00196 * 22 20 18 25 25 H 1.48494 * 109.47062 * 330.00402 * 22 20 18 26 26 C 1.53779 * 113.61581 * 142.50385 * 14 12 10 27 27 H 1.09004 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47548 * 300.00444 * 1 2 3 29 29 H 1.09005 * 109.46737 * 60.00297 * 1 2 3 30 30 H 1.08998 * 109.47548 * 239.99556 * 2 1 3 31 31 H 1.09005 * 109.46737 * 119.99703 * 2 1 3 32 32 H 1.08993 * 109.47280 * 59.99895 * 3 2 1 33 33 H 1.09000 * 109.47087 * 299.99003 * 3 2 1 34 34 H 1.08998 * 109.47548 * 59.99556 * 4 3 2 35 35 H 1.09005 * 109.46737 * 299.99703 * 4 3 2 36 36 H 0.96997 * 119.99651 * 245.00130 * 8 5 4 37 37 H 1.08999 * 109.47521 * 44.99860 * 9 8 5 38 38 H 1.08999 * 109.47088 * 285.00240 * 9 8 5 39 39 H 1.09004 * 109.46666 * 269.99777 * 13 12 10 40 40 H 1.08999 * 109.47266 * 29.99467 * 13 12 10 41 41 H 1.08995 * 109.47412 * 150.00054 * 13 12 10 42 42 H 1.09002 * 112.90477 * 11.25212 * 14 12 10 43 43 H 1.09004 * 113.61451 * 105.47149 * 15 14 12 44 44 H 1.08994 * 113.61477 * 334.56451 * 15 14 12 45 45 H 1.09000 * 113.61529 * 270.88430 * 16 15 14 46 46 H 0.97005 * 120.00129 * 334.99728 * 17 16 15 47 47 H 0.97000 * 120.00182 * 179.97438 * 21 20 18 48 48 H 1.09006 * 113.61307 * 25.43652 * 26 14 12 49 49 H 1.09007 * 113.61642 * 254.53409 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8790 3.7867 1.2355 7 8 3.8781 3.7859 -1.2385 8 7 5.8244 3.0077 -0.0013 9 6 6.5071 2.4090 -1.1509 10 6 7.9796 2.7207 -1.0789 11 8 8.4159 3.3787 -0.1581 12 7 8.8120 2.2684 -2.0375 13 6 8.2850 1.4740 -3.1500 14 6 10.2435 2.5718 -1.9678 15 6 10.7652 3.3630 -3.1789 16 6 12.0208 2.4772 -3.1172 17 7 12.5178 2.0711 -4.4341 18 6 13.8377 1.7448 -4.5971 19 1 14.5123 1.7872 -3.7549 20 6 14.3084 1.3595 -5.8448 21 7 15.5769 1.0453 -6.0014 22 14 13.1412 1.2854 -7.3015 23 1 13.1244 2.6013 -7.9896 24 1 13.5979 0.2372 -8.2490 25 1 11.7736 0.9591 -6.8238 26 6 11.1420 1.4150 -2.4359 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8892 36 1 6.3385 3.3192 0.7599 37 1 6.0937 2.8183 -2.0727 38 1 6.3632 1.3286 -1.1366 39 1 8.3096 0.4169 -2.8853 40 1 7.2572 1.7733 -3.3554 41 1 8.8961 1.6407 -4.0370 42 1 10.5411 2.9953 -1.0085 43 1 10.9608 4.4134 -2.9629 44 1 10.1731 3.2188 -4.0826 45 1 12.8044 2.8748 -2.4721 46 1 11.9118 2.0333 -5.1907 47 1 15.9058 0.7757 -6.8732 48 1 10.6529 0.7382 -3.1366 49 1 11.6418 0.8926 -1.6201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486481489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:15 Heat of formation + Delta-G solvation = -106.395199 kcal Electronic energy + Delta-G solvation = -28393.331061 eV Core-core repulsion = 24289.481496 eV Total energy + Delta-G solvation = -4103.849565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41660 -39.57011 -38.22605 -37.09305 -36.65653 -36.31491 -35.75817 -34.83513 -32.56963 -31.38794 -28.55768 -27.99422 -26.56960 -25.99445 -25.27541 -23.60913 -22.19403 -21.14766 -20.43938 -20.21751 -19.33990 -18.97429 -18.06578 -17.74942 -17.31679 -17.01775 -16.82734 -16.61616 -16.33919 -15.95622 -15.74675 -15.06157 -14.92097 -14.74907 -14.57389 -14.29719 -14.19742 -13.82815 -13.77436 -13.61178 -13.54983 -13.27239 -13.24506 -13.19015 -13.12428 -13.06629 -12.81844 -12.65647 -12.45165 -12.24010 -12.15703 -12.10166 -11.82869 -11.71692 -11.52702 -11.52067 -11.46407 -10.96844 -10.90447 -10.51320 -9.62563 -9.27499 -8.00793 -5.34910 -0.79058 1.39072 1.44768 1.50010 1.51697 1.58464 2.02826 2.50659 2.79168 3.19997 3.29159 3.35192 3.56703 3.62388 3.76523 3.80618 3.84459 4.04993 4.07262 4.14203 4.23079 4.28536 4.31533 4.37289 4.48052 4.59085 4.61439 4.72479 4.74935 4.75426 4.83745 4.86572 4.92414 5.00092 5.00202 5.08154 5.15116 5.23620 5.31250 5.37753 5.45563 5.61555 5.78825 5.88188 6.23318 6.40475 7.05812 7.09108 7.84415 8.04938 9.20618 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.001902 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.137113 B =14717.129208 C =15504.647147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C -0.128 4.128 4 C -0.602 4.602 5 S 2.615 3.385 6 O -0.997 6.997 7 O -0.992 6.992 8 N -1.115 6.115 9 C 0.092 3.908 10 C 0.505 3.495 11 O -0.579 6.579 12 N -0.595 5.595 13 C 0.055 3.945 14 C 0.130 3.870 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.736 5.736 18 C -0.237 4.237 19 H 0.054 0.946 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.959 3.041 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.242 1.242 26 C -0.158 4.158 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.422 0.578 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.369 0.631 47 H 0.257 0.743 48 H 0.093 0.907 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.370 -4.660 10.850 35.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C -0.167 4.167 4 C -0.735 4.735 5 S 2.712 3.288 6 O -0.988 6.988 7 O -0.981 6.981 8 N -0.876 5.876 9 C -0.037 4.037 10 C 0.293 3.707 11 O -0.459 6.459 12 N -0.326 5.326 13 C -0.086 4.086 14 C 0.025 3.975 15 C -0.192 4.192 16 C 0.043 3.957 17 N -0.377 5.377 18 C -0.368 4.368 19 H 0.072 0.928 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.785 3.215 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.166 1.166 26 C -0.199 4.199 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.259 0.741 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.203 0.797 47 H 0.066 0.934 48 H 0.112 0.888 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.454 -3.557 11.199 35.458 hybrid contribution 0.779 -0.358 -0.596 1.044 sum -32.675 -3.915 10.603 34.575 Atomic orbital electron populations 1.21866 0.95657 1.02376 1.02120 1.21497 0.96007 0.94387 1.03543 1.21546 0.90340 1.00851 1.03971 1.30432 1.06403 1.21757 1.14953 1.04730 0.72345 0.78912 0.72772 1.93564 1.83316 1.75362 1.46530 1.93560 1.83587 1.74428 1.46572 1.55344 1.25766 1.78561 1.27930 1.21485 0.89042 1.02256 0.90918 1.21036 0.89556 0.78726 0.81401 1.90682 1.78295 1.41131 1.35766 1.47861 1.07102 1.52688 1.24998 1.22240 1.01307 0.96279 0.88767 1.22228 0.79243 0.97147 0.98844 1.23825 0.97158 0.99409 0.98809 1.21603 0.93134 0.94499 0.86496 1.42603 1.06565 1.81220 1.07328 1.19091 0.86015 1.36444 0.95212 0.92770 1.25579 0.97612 1.01880 1.00711 1.69901 1.15571 1.54032 1.24043 0.85364 0.79815 0.77233 0.79050 1.20828 1.22526 1.16552 1.24068 0.97589 0.97733 1.00519 0.91885 0.92713 0.92471 0.90360 0.90857 0.90580 0.90019 0.81423 0.82241 0.74084 0.85647 0.83823 0.89974 0.87574 0.90745 0.87730 0.91322 0.88830 0.91015 0.79738 0.93410 0.88832 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.12 -0.54 5.93 30.59 0.18 -0.35 16 3 C -0.13 -0.83 5.22 30.59 0.16 -0.67 16 4 C -0.60 -2.42 6.07 71.98 0.44 -1.98 16 5 S 2.61 37.00 5.46 -56.49 -0.31 36.69 16 6 O -1.00 -22.63 18.08 -127.65 -2.31 -24.94 16 7 O -0.99 -20.54 17.50 -127.65 -2.23 -22.78 16 8 N -1.11 -15.88 5.82 -190.81 -1.11 -16.99 16 9 C 0.09 1.01 5.16 85.63 0.44 1.45 16 10 C 0.50 10.29 7.74 87.66 0.68 10.97 16 11 O -0.58 -16.90 15.21 -3.05 -0.05 -16.95 16 12 N -0.60 -11.40 3.08 -819.64 -2.53 -13.93 16 13 C 0.06 0.63 8.84 127.77 1.13 1.76 16 14 C 0.13 3.27 4.20 45.52 0.19 3.47 16 15 C -0.15 -4.19 7.37 31.12 0.23 -3.96 16 16 C 0.15 5.33 4.48 45.52 0.20 5.53 16 17 N -0.74 -31.98 5.21 -320.44 -1.67 -33.65 16 18 C -0.24 -13.06 10.45 84.03 0.88 -12.18 16 19 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.99 -62.21 13.97 21.65 0.30 -61.90 16 22 Si 0.96 43.28 27.74 68.60 1.90 45.18 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.24 -9.33 6.52 99.48 0.65 -8.68 16 26 C -0.16 -4.44 7.30 31.12 0.23 -4.21 16 27 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.17 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.42 7.42 7.66 -96.75 -0.74 6.68 16 37 H 0.13 1.03 6.96 -2.39 -0.02 1.01 16 38 H 0.14 0.15 8.11 -2.39 -0.02 0.14 16 39 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.11 0.49 6.44 -2.39 -0.02 0.47 16 41 H 0.07 1.03 6.33 -2.39 -0.02 1.02 16 42 H 0.10 2.96 7.24 -2.39 -0.02 2.94 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.09 2.35 6.89 -2.39 -0.02 2.33 16 45 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 46 H 0.37 14.95 5.79 -92.70 -0.54 14.41 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.09 2.46 6.72 -2.38 -0.02 2.44 16 49 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -85.76 405.31 -2.44 -88.19 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.38 Total: 24.79 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.94 Total: -3.73 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.00 Total: -126.47 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -4.59 Total: -64.66 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.90 Total: 45.18 kcal Atomic # 16 Polarization: 37.00 SS G_CDS: -0.31 Total: 36.69 kcal Total: -85.76 -2.44 -88.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486481489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -85.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds