Wall clock time and date at job start Wed Apr 1 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46820 * 305.00039 * 4 3 2 6 6 C 1.50689 * 109.47063 * 185.00030 * 4 3 2 7 7 O 1.21275 * 120.00524 * 330.00234 * 6 4 3 8 8 N 1.34786 * 120.00039 * 149.99956 * 6 4 3 9 9 C 1.46921 * 120.62881 * 0.02562 * 8 6 4 10 10 C 1.53191 * 108.77787 * 126.41042 * 9 8 6 11 11 C 1.53043 * 109.31103 * 54.63675 * 10 9 8 12 12 C 1.53044 * 109.53520 * 298.63180 * 11 10 9 13 13 H 1.08999 * 109.50014 * 301.38806 * 12 11 10 14 14 N 1.46492 * 109.49771 * 181.31476 * 12 11 10 15 15 C 1.46506 * 120.00392 * 300.00696 * 14 12 11 16 16 C 1.36944 * 120.00150 * 120.00024 * 14 12 11 17 17 H 1.08000 * 119.99546 * 342.37212 * 16 14 12 18 18 C 1.38804 * 120.00045 * 162.09587 * 16 14 12 19 19 N 1.31617 * 120.00247 * 344.14378 * 18 16 14 20 20 Si 1.86801 * 119.99931 * 164.14584 * 18 16 14 21 21 H 1.48503 * 109.46888 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47420 * 119.99832 * 20 18 16 23 23 H 1.48497 * 109.47271 * 240.00117 * 20 18 16 24 24 C 1.46917 * 120.62962 * 180.02562 * 8 6 4 25 25 S 1.81401 * 109.47090 * 64.99701 * 4 3 2 26 26 N 1.65603 * 104.44672 * 59.99959 * 25 4 3 27 27 O 1.42095 * 110.54280 * 171.62528 * 25 4 3 28 28 O 1.42100 * 110.54626 * 308.37659 * 25 4 3 29 29 H 1.09003 * 109.47235 * 299.99906 * 1 2 3 30 30 H 1.09001 * 109.46948 * 60.00099 * 1 2 3 31 31 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47235 * 240.00093 * 2 1 3 33 33 H 1.09001 * 109.46948 * 119.99901 * 2 1 3 34 34 H 1.09003 * 109.46920 * 59.99901 * 3 2 1 35 35 H 1.08996 * 109.46852 * 300.00273 * 3 2 1 36 36 H 1.09007 * 109.58995 * 6.62207 * 9 8 6 37 37 H 1.09004 * 109.58729 * 246.20114 * 9 8 6 38 38 H 1.08996 * 109.49735 * 294.68336 * 10 9 8 39 39 H 1.09007 * 109.52256 * 174.59897 * 10 9 8 40 40 H 1.09000 * 109.46018 * 178.61839 * 11 10 9 41 41 H 1.08998 * 109.45312 * 58.64452 * 11 10 9 42 42 H 1.08997 * 109.46609 * 264.85781 * 15 14 12 43 43 H 1.08994 * 109.47017 * 24.85210 * 15 14 12 44 44 H 1.08999 * 109.47069 * 144.85567 * 15 14 12 45 45 H 0.97003 * 120.00398 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58773 * 113.80606 * 24 8 6 47 47 H 1.08994 * 109.59129 * 353.37643 * 24 8 6 48 48 H 0.97002 * 120.00046 * 149.99131 * 26 25 4 49 49 H 0.97000 * 120.00158 * 329.99991 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0724 2.8578 0.1232 7 8 3.4168 3.7753 -0.3232 8 7 5.2504 3.1041 0.7302 9 6 6.0561 2.0032 1.2755 10 6 7.4711 2.0935 0.6956 11 6 8.0426 3.4864 0.9700 12 6 7.1713 4.5413 0.2841 13 1 7.1387 4.3454 -0.7876 14 7 7.7367 5.8718 0.5211 15 6 7.8851 6.3715 1.8902 16 6 8.1268 6.6484 -0.5372 17 1 8.2895 6.1990 -1.5057 18 6 8.3075 8.0140 -0.3665 19 7 7.8165 8.6151 0.6965 20 14 9.2476 8.9989 -1.6455 21 1 9.6935 8.0953 -2.7364 22 1 8.3647 10.0535 -2.2055 23 1 10.4324 9.6305 -1.0113 24 6 5.7530 4.4786 0.8590 25 16 4.1741 0.7199 -1.5510 26 7 3.5553 1.7011 -2.7328 27 8 5.5813 0.8823 -1.6619 28 8 3.5614 -0.5406 -1.7857 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 5.6074 1.0494 0.9975 37 1 6.1003 2.0858 2.3615 38 1 7.4352 1.9203 -0.3799 39 1 8.1056 1.3412 1.1643 40 1 9.0587 3.5453 0.5799 41 1 8.0550 3.6685 2.0446 42 1 7.0196 6.9808 2.1503 43 1 7.9566 5.5295 2.5786 44 1 8.7894 6.9760 1.9604 45 1 7.9424 9.5695 0.8156 46 1 5.7725 4.7635 1.9110 47 1 5.1045 5.1582 0.3063 48 1 4.0373 1.8198 -3.5662 49 1 2.7109 2.1572 -2.5917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491943062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:00 Heat of formation + Delta-G solvation = -82.552748 kcal Electronic energy + Delta-G solvation = -31077.200652 eV Core-core repulsion = 26974.384973 eV Total energy + Delta-G solvation = -4102.815679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.32590 -37.84419 -37.45038 -36.25559 -35.67225 -35.18273 -33.28537 -32.50844 -31.42175 -30.97595 -28.75332 -26.05916 -25.91218 -24.52158 -23.36482 -21.73429 -21.70301 -20.26906 -19.48617 -18.81980 -18.22379 -17.75178 -16.95363 -16.73534 -16.41374 -16.03404 -15.50029 -15.14033 -14.79363 -14.43515 -14.20007 -14.08281 -13.96984 -13.62704 -13.55754 -13.10291 -12.71549 -12.67596 -12.59643 -12.44358 -12.39513 -12.36992 -12.28501 -11.91794 -11.75227 -11.31854 -11.27291 -11.11709 -10.99635 -10.79370 -10.63350 -10.55379 -10.44368 -10.40863 -10.33627 -10.17749 -9.93497 -9.76599 -9.72274 -8.62939 -8.41263 -6.82176 -5.72998 -3.14267 -0.14977 2.39444 2.62683 2.89721 3.31155 3.39245 3.46710 3.49047 3.72249 4.02211 4.43370 4.46827 4.50283 4.74877 4.75533 4.91282 5.15268 5.16194 5.29212 5.30810 5.43184 5.48360 5.49838 5.53637 5.54248 5.75315 5.76775 5.87640 5.88456 5.91303 6.00506 6.11908 6.17672 6.23000 6.43642 6.47354 6.60212 6.74837 6.89854 6.92154 6.97748 7.39553 7.42002 7.69543 7.82750 8.04337 8.37017 9.22719 9.86225 10.32573 11.32200 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003106 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.334586 B = 9012.562148 C = 9044.344885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.170 4.170 3 C -0.086 4.086 4 C -0.623 4.623 5 H 0.159 0.841 6 C 0.530 3.470 7 O -0.520 6.520 8 N -0.590 5.590 9 C 0.106 3.894 10 C -0.137 4.137 11 C -0.133 4.133 12 C 0.168 3.832 13 H 0.069 0.931 14 N -0.592 5.592 15 C 0.161 3.839 16 C -0.253 4.253 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.097 3.903 25 S 2.627 3.373 26 N -1.239 6.239 27 O -0.942 6.942 28 O -0.948 6.948 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.000 1.000 44 H 0.047 0.953 45 H 0.252 0.748 46 H 0.066 0.934 47 H 0.094 0.906 48 H 0.422 0.578 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -19.099 0.646 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.125 4.125 4 C -0.733 4.733 5 H 0.177 0.823 6 C 0.314 3.686 7 O -0.397 6.397 8 N -0.323 5.323 9 C -0.017 4.017 10 C -0.176 4.176 11 C -0.173 4.173 12 C 0.058 3.942 13 H 0.087 0.913 14 N -0.314 5.314 15 C 0.017 3.983 16 C -0.382 4.382 17 H 0.090 0.910 18 C -0.198 4.198 19 N -0.552 5.552 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.026 4.026 25 S 2.713 3.287 26 N -0.915 5.915 27 O -0.931 6.931 28 O -0.936 6.936 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.253 0.747 49 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.259 -19.264 0.500 21.831 hybrid contribution -0.003 1.353 -0.190 1.366 sum -10.262 -17.911 0.310 20.644 Atomic orbital electron populations 1.21696 0.94873 1.01989 1.01991 1.22276 0.97490 0.95496 1.05468 1.21277 0.86856 0.98718 1.05618 1.30784 1.09350 1.07689 1.25472 0.82308 1.19033 0.81757 0.87894 0.79957 1.90741 1.56144 1.44606 1.48186 1.48264 1.18949 1.09458 1.55622 1.21826 0.92805 0.88526 0.98572 1.21978 0.94047 0.98320 1.03228 1.22091 1.00530 0.93567 1.01069 1.20638 0.89021 0.86353 0.98177 0.91316 1.44013 1.70636 1.13340 1.03363 1.20815 1.00979 0.93647 0.82896 1.19322 1.38981 0.88939 0.90962 0.91044 1.24921 1.00646 0.96347 0.97876 1.70116 1.46840 1.09183 1.29097 0.86181 0.79505 0.80014 0.80842 1.20314 1.21811 1.21661 1.22702 0.98263 0.79765 1.01890 1.04601 0.74255 0.74392 0.75427 1.52994 1.36664 1.69041 1.32799 1.93647 1.29087 1.85970 1.84438 1.93564 1.77561 1.39699 1.82822 0.92751 0.92430 0.92287 0.87573 0.91311 0.89293 0.90015 0.91688 0.90870 0.89552 0.91142 0.91424 0.92379 0.95435 0.98202 0.93460 0.93822 0.91595 0.88738 0.74676 0.75460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.17 -1.37 5.65 -26.73 -0.15 -1.52 16 3 C -0.09 -0.77 4.15 -26.73 -0.11 -0.88 16 4 C -0.62 -6.35 2.00 -27.89 -0.06 -6.40 16 5 H 0.16 1.18 6.19 -51.92 -0.32 0.86 16 6 C 0.53 7.61 6.58 -10.99 -0.07 7.54 16 7 O -0.52 -8.97 15.69 5.56 0.09 -8.88 16 8 N -0.59 -8.87 2.97 -172.79 -0.51 -9.39 16 9 C 0.11 1.27 6.02 -3.71 -0.02 1.25 16 10 C -0.14 -1.84 6.08 -26.61 -0.16 -2.01 16 11 C -0.13 -2.21 5.13 -26.69 -0.14 -2.35 16 12 C 0.17 3.39 2.74 -67.82 -0.19 3.21 16 13 H 0.07 1.49 7.83 -51.93 -0.41 1.08 16 14 N -0.59 -14.53 2.82 -173.36 -0.49 -15.02 16 15 C 0.16 3.86 7.91 59.85 0.47 4.34 16 16 C -0.25 -6.92 9.64 -15.06 -0.15 -7.06 16 17 H 0.07 1.93 7.79 -52.49 -0.41 1.53 16 18 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 19 N -0.91 -26.29 10.58 55.49 0.59 -25.70 16 20 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.10 1.81 5.79 -3.73 -0.02 1.79 16 25 S 2.63 28.50 5.41 -107.50 -0.58 27.92 16 26 N -1.24 -11.63 9.22 60.35 0.56 -11.07 16 27 O -0.94 -12.93 16.58 -57.54 -0.95 -13.89 16 28 O -0.95 -11.33 14.89 -57.54 -0.86 -12.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.97 4.90 -51.93 -0.25 0.72 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.68 6.56 -51.93 -0.34 0.34 16 36 H 0.06 0.60 5.24 -51.92 -0.27 0.33 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.30 7.13 -51.93 -0.37 0.93 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 42 H 0.03 0.72 7.46 -51.93 -0.39 0.33 16 43 H 0.00 -0.01 6.46 -51.93 -0.34 -0.35 16 44 H 0.05 1.23 7.07 -51.93 -0.37 0.87 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.07 1.23 7.51 -51.93 -0.39 0.84 16 47 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 48 H 0.42 3.45 8.96 -34.47 -0.31 3.14 16 49 H 0.42 3.36 7.47 -34.47 -0.26 3.10 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -34.11 383.47 -9.38 -43.48 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.65 Total: 4.89 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.31 Total: -2.86 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.14 Total: -61.18 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.72 Total: -34.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 28.50 SS G_CDS: -0.58 Total: 27.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.11 -9.38 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491943062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.072 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds