Wall clock time and date at job start Wed Apr 1 2020 04:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 C 1.53000 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46820 * 305.00039 * 4 3 2 6 6 C 1.50689 * 109.47063 * 185.00030 * 4 3 2 7 7 O 1.21275 * 120.00524 * 330.00234 * 6 4 3 8 8 N 1.34786 * 120.00039 * 149.99956 * 6 4 3 9 9 C 1.46921 * 120.62881 * 0.02562 * 8 6 4 10 10 C 1.53191 * 108.77787 * 126.41042 * 9 8 6 11 11 C 1.53043 * 109.31103 * 54.63675 * 10 9 8 12 12 C 1.53044 * 109.53520 * 298.63180 * 11 10 9 13 13 H 1.08999 * 109.50014 * 301.38806 * 12 11 10 14 14 N 1.46492 * 109.49771 * 181.31476 * 12 11 10 15 15 C 1.46506 * 120.00392 * 300.00696 * 14 12 11 16 16 C 1.36944 * 120.00150 * 120.00024 * 14 12 11 17 17 H 1.08000 * 119.99546 * 342.37212 * 16 14 12 18 18 C 1.38804 * 120.00045 * 162.09587 * 16 14 12 19 19 N 1.31617 * 120.00247 * 344.14378 * 18 16 14 20 20 Si 1.86801 * 119.99931 * 164.14584 * 18 16 14 21 21 H 1.48503 * 109.46888 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47420 * 119.99832 * 20 18 16 23 23 H 1.48497 * 109.47271 * 240.00117 * 20 18 16 24 24 C 1.46917 * 120.62962 * 180.02562 * 8 6 4 25 25 S 1.81401 * 109.47090 * 64.99701 * 4 3 2 26 26 N 1.65603 * 104.44672 * 59.99959 * 25 4 3 27 27 O 1.42095 * 110.54280 * 171.62528 * 25 4 3 28 28 O 1.42100 * 110.54626 * 308.37659 * 25 4 3 29 29 H 1.09003 * 109.47235 * 299.99906 * 1 2 3 30 30 H 1.09001 * 109.46948 * 60.00099 * 1 2 3 31 31 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47235 * 240.00093 * 2 1 3 33 33 H 1.09001 * 109.46948 * 119.99901 * 2 1 3 34 34 H 1.09003 * 109.46920 * 59.99901 * 3 2 1 35 35 H 1.08996 * 109.46852 * 300.00273 * 3 2 1 36 36 H 1.09007 * 109.58995 * 6.62207 * 9 8 6 37 37 H 1.09004 * 109.58729 * 246.20114 * 9 8 6 38 38 H 1.08996 * 109.49735 * 294.68336 * 10 9 8 39 39 H 1.09007 * 109.52256 * 174.59897 * 10 9 8 40 40 H 1.09000 * 109.46018 * 178.61839 * 11 10 9 41 41 H 1.08998 * 109.45312 * 58.64452 * 11 10 9 42 42 H 1.08997 * 109.46609 * 264.85781 * 15 14 12 43 43 H 1.08994 * 109.47017 * 24.85210 * 15 14 12 44 44 H 1.08999 * 109.47069 * 144.85567 * 15 14 12 45 45 H 0.97003 * 120.00398 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58773 * 113.80606 * 24 8 6 47 47 H 1.08994 * 109.59129 * 353.37643 * 24 8 6 48 48 H 0.97002 * 120.00046 * 149.99131 * 26 25 4 49 49 H 0.97000 * 120.00158 * 329.99991 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0724 2.8578 0.1232 7 8 3.4168 3.7753 -0.3232 8 7 5.2504 3.1041 0.7302 9 6 6.0561 2.0032 1.2755 10 6 7.4711 2.0935 0.6956 11 6 8.0426 3.4864 0.9700 12 6 7.1713 4.5413 0.2841 13 1 7.1387 4.3454 -0.7876 14 7 7.7367 5.8718 0.5211 15 6 7.8851 6.3715 1.8902 16 6 8.1268 6.6484 -0.5372 17 1 8.2895 6.1990 -1.5057 18 6 8.3075 8.0140 -0.3665 19 7 7.8165 8.6151 0.6965 20 14 9.2476 8.9989 -1.6455 21 1 9.6935 8.0953 -2.7364 22 1 8.3647 10.0535 -2.2055 23 1 10.4324 9.6305 -1.0113 24 6 5.7530 4.4786 0.8590 25 16 4.1741 0.7199 -1.5510 26 7 3.5553 1.7011 -2.7328 27 8 5.5813 0.8823 -1.6619 28 8 3.5614 -0.5406 -1.7857 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 5.6074 1.0494 0.9975 37 1 6.1003 2.0858 2.3615 38 1 7.4352 1.9203 -0.3799 39 1 8.1056 1.3412 1.1643 40 1 9.0587 3.5453 0.5799 41 1 8.0550 3.6685 2.0446 42 1 7.0196 6.9808 2.1503 43 1 7.9566 5.5295 2.5786 44 1 8.7894 6.9760 1.9604 45 1 7.9424 9.5695 0.8156 46 1 5.7725 4.7635 1.9110 47 1 5.1045 5.1582 0.3063 48 1 4.0373 1.8198 -3.5662 49 1 2.7109 2.1572 -2.5917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491943062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:59 Heat of formation + Delta-G solvation = -108.231391 kcal Electronic energy + Delta-G solvation = -31078.314162 eV Core-core repulsion = 26974.384973 eV Total energy + Delta-G solvation = -4103.929189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.52093 -39.15348 -38.45012 -37.20794 -36.83517 -36.47910 -34.14115 -34.01288 -32.84964 -32.03305 -30.28302 -28.06144 -26.97392 -25.70937 -24.87657 -23.10176 -22.39340 -21.50321 -20.54606 -20.07462 -19.10833 -18.91527 -18.61748 -17.92859 -17.33386 -17.10239 -16.95783 -16.38516 -16.00633 -15.73620 -15.45506 -15.28112 -15.16191 -14.89173 -14.69000 -14.38979 -14.16218 -13.90887 -13.67722 -13.60854 -13.42229 -13.31343 -13.29232 -13.15460 -12.95321 -12.84948 -12.53209 -12.42841 -12.20462 -12.08870 -12.03372 -12.01203 -11.91088 -11.77645 -11.64887 -11.38958 -11.32386 -11.21426 -10.96563 -10.64237 -9.78341 -8.81994 -7.84426 -5.27661 -1.03481 1.35167 1.44452 1.45827 1.56042 1.59945 1.86227 2.45319 2.50202 2.78960 3.18688 3.28486 3.54686 3.60170 3.71695 3.98235 4.01984 4.06261 4.11876 4.20602 4.22832 4.38762 4.54318 4.58712 4.65488 4.70162 4.75560 4.83632 4.86666 4.93640 4.96628 5.04569 5.15543 5.19558 5.26237 5.28664 5.35153 5.38736 5.47764 5.51459 5.58341 5.62206 5.73191 6.22002 6.24691 6.30314 6.88355 7.13950 7.86471 8.26897 9.18772 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003106 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.334586 B = 9012.562148 C = 9044.344885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.611 4.611 5 H 0.194 0.806 6 C 0.526 3.474 7 O -0.555 6.555 8 N -0.594 5.594 9 C 0.095 3.905 10 C -0.132 4.132 11 C -0.123 4.123 12 C 0.165 3.835 13 H 0.044 0.956 14 N -0.608 5.608 15 C 0.179 3.821 16 C -0.262 4.262 17 H 0.067 0.933 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.288 1.288 24 C 0.113 3.887 25 S 2.640 3.360 26 N -1.239 6.239 27 O -0.970 6.970 28 O -0.955 6.955 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.000 1.000 43 H 0.037 0.963 44 H 0.019 0.981 45 H 0.248 0.752 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.427 0.573 49 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -21.747 1.375 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.206 4.206 3 C -0.126 4.126 4 C -0.721 4.721 5 H 0.211 0.789 6 C 0.312 3.688 7 O -0.434 6.434 8 N -0.326 5.326 9 C -0.026 4.026 10 C -0.171 4.171 11 C -0.162 4.162 12 C 0.057 3.943 13 H 0.063 0.937 14 N -0.331 5.331 15 C 0.034 3.966 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.215 1.215 24 C -0.012 4.012 25 S 2.728 3.272 26 N -0.917 5.917 27 O -0.960 6.960 28 O -0.944 6.944 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.259 0.741 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.602 -21.981 1.212 24.434 hybrid contribution 0.036 2.109 -0.447 2.156 sum -10.566 -19.872 0.766 22.519 Atomic orbital electron populations 1.21735 0.94262 1.02591 1.02315 1.22268 0.98090 0.94526 1.05702 1.21360 0.85743 0.99633 1.05883 1.30757 1.10257 1.04753 1.26338 0.78925 1.19613 0.81140 0.89305 0.78773 1.90731 1.57067 1.46272 1.49280 1.48252 1.19654 1.08613 1.56084 1.22199 0.91584 0.88733 1.00080 1.21959 0.95555 0.96821 1.02733 1.21933 0.99080 0.94275 1.00903 1.20778 0.90642 0.85409 0.97502 0.93716 1.44198 1.71437 1.14532 1.02904 1.20524 0.98322 0.94203 0.83522 1.19581 1.38527 0.89540 0.91588 0.91529 1.25644 1.01850 0.97319 0.99944 1.70267 1.48194 1.09049 1.30800 0.85217 0.78027 0.78442 0.78844 1.19362 1.22092 1.21502 1.22106 0.96436 0.81652 1.00988 1.04085 0.73457 0.74194 0.75484 1.52920 1.37009 1.68950 1.32839 1.93620 1.30957 1.86420 1.84968 1.93569 1.77507 1.40338 1.82999 0.92282 0.92369 0.91571 0.88551 0.89811 0.89135 0.89891 0.88361 0.88098 0.91280 0.87511 0.92624 0.91316 0.98198 0.94474 0.96243 0.94283 0.91368 0.92551 0.74082 0.74722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.17 -2.25 5.65 30.60 0.17 -2.07 16 3 C -0.09 -1.36 4.15 30.60 0.13 -1.24 16 4 C -0.61 -10.88 2.00 29.84 0.06 -10.82 16 5 H 0.19 2.01 6.19 -2.39 -0.01 2.00 16 6 C 0.53 14.43 6.58 87.65 0.58 15.01 16 7 O -0.55 -19.18 15.69 -3.01 -0.05 -19.23 16 8 N -0.59 -16.94 2.97 -818.98 -2.43 -19.38 16 9 C 0.10 1.94 6.02 86.36 0.52 2.46 16 10 C -0.13 -3.16 6.08 30.67 0.19 -2.98 16 11 C -0.12 -3.89 5.13 30.62 0.16 -3.73 16 12 C 0.16 6.73 2.74 45.06 0.12 6.85 16 13 H 0.04 2.01 7.83 -2.39 -0.02 1.99 16 14 N -0.61 -30.55 2.82 -702.40 -1.98 -32.53 16 15 C 0.18 8.73 7.91 127.77 1.01 9.74 16 16 C -0.26 -14.75 9.64 84.03 0.81 -13.94 16 17 H 0.07 3.72 7.79 -2.91 -0.02 3.69 16 18 C -0.05 -3.00 5.06 84.86 0.43 -2.57 16 19 N -0.94 -55.94 10.58 21.65 0.23 -55.71 16 20 Si 0.97 46.10 29.58 68.60 2.03 48.13 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.11 4.24 5.79 86.36 0.50 4.74 16 25 S 2.64 52.48 5.41 -56.49 -0.31 52.18 16 26 N -1.24 -22.24 9.22 37.02 0.34 -21.90 16 27 O -0.97 -25.14 16.58 -127.65 -2.12 -27.26 16 28 O -0.96 -20.80 14.89 -127.65 -1.90 -22.70 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 1.53 4.90 -2.39 -0.01 1.51 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.26 6.56 -2.39 -0.02 1.25 16 36 H 0.10 1.37 5.24 -2.38 -0.01 1.35 16 37 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.94 7.13 -2.39 -0.02 1.93 16 39 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.04 6.72 -2.39 -0.02 2.02 16 42 H 0.00 -0.02 7.46 -2.39 -0.02 -0.03 16 43 H 0.04 1.49 6.46 -2.39 -0.02 1.48 16 44 H 0.02 1.02 7.07 -2.39 -0.02 1.00 16 45 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.07 2.51 7.51 -2.39 -0.02 2.50 16 47 H 0.06 2.54 7.00 -2.39 -0.02 2.53 16 48 H 0.43 6.79 8.96 -96.74 -0.87 5.93 16 49 H 0.42 6.52 7.47 -96.74 -0.72 5.80 16 Total: -1.00 -76.41 383.47 -1.41 -77.82 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.61 Total: 20.22 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.39 Total: 0.37 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -3.85 Total: -129.52 kcal Atomic # 8 Polarization: -65.13 SS G_CDS: -4.07 Total: -69.19 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 52.48 SS G_CDS: -0.31 Total: 52.18 kcal Total: -76.41 -1.41 -77.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491943062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.410 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds