Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.53000 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47291 * 55.00418 * 4 3 2 6 6 C 1.50707 * 109.46677 * 175.00069 * 4 3 2 7 7 O 1.21282 * 120.00118 * 29.39596 * 6 4 3 8 8 N 1.34774 * 119.99770 * 209.39058 * 6 4 3 9 9 C 1.46925 * 120.62991 * 184.70149 * 8 6 4 10 10 C 1.53192 * 108.77679 * 126.37318 * 9 8 6 11 11 C 1.53040 * 109.31521 * 54.63202 * 10 9 8 12 12 C 1.53039 * 109.53788 * 298.64049 * 11 10 9 13 13 H 1.09000 * 109.49550 * 301.37981 * 12 11 10 14 14 N 1.46498 * 109.49622 * 181.31564 * 12 11 10 15 15 C 1.46501 * 120.00094 * 299.99755 * 14 12 11 16 16 C 1.36933 * 120.00058 * 119.99890 * 14 12 11 17 17 H 1.08001 * 120.00402 * 24.06239 * 16 14 12 18 18 C 1.38817 * 119.99876 * 204.06502 * 16 14 12 19 19 N 1.31610 * 120.00335 * 11.68844 * 18 16 14 20 20 Si 1.86803 * 119.99660 * 191.68838 * 18 16 14 21 21 H 1.48494 * 109.47526 * 60.00095 * 20 18 16 22 22 H 1.48507 * 109.46795 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47114 * 299.99668 * 20 18 16 24 24 C 1.46923 * 120.63161 * 4.42457 * 8 6 4 25 25 S 1.81395 * 109.47358 * 294.99757 * 4 3 2 26 26 N 1.65597 * 104.45078 * 300.00404 * 25 4 3 27 27 O 1.42100 * 110.54100 * 51.63133 * 25 4 3 28 28 O 1.42101 * 110.54628 * 188.37985 * 25 4 3 29 29 H 1.08999 * 109.47248 * 60.00024 * 1 2 3 30 30 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 299.99923 * 1 2 3 32 32 H 1.09000 * 109.47323 * 240.00077 * 2 1 3 33 33 H 1.09003 * 109.47500 * 120.00420 * 2 1 3 34 34 H 1.09004 * 109.47269 * 60.00252 * 3 2 1 35 35 H 1.08999 * 109.47026 * 300.00112 * 3 2 1 36 36 H 1.09001 * 109.58597 * 246.15770 * 9 8 6 37 37 H 1.09000 * 109.58802 * 6.43907 * 9 8 6 38 38 H 1.09004 * 109.49732 * 174.58928 * 10 9 8 39 39 H 1.09005 * 109.49656 * 294.68045 * 10 9 8 40 40 H 1.09001 * 109.45700 * 58.66020 * 11 10 9 41 41 H 1.08995 * 109.46179 * 178.61617 * 11 10 9 42 42 H 1.09000 * 109.47205 * 87.52741 * 15 14 12 43 43 H 1.08996 * 109.47359 * 207.53507 * 15 14 12 44 44 H 1.09004 * 109.47281 * 327.52996 * 15 14 12 45 45 H 0.96997 * 120.00480 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.59018 * 353.41525 * 24 8 6 47 47 H 1.09005 * 109.58636 * 113.84405 * 24 8 6 48 48 H 0.97005 * 119.99954 * 149.99688 * 26 25 4 49 49 H 0.96998 * 120.00108 * 329.99237 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0722 2.8579 -0.1245 7 8 3.4118 3.7762 0.3131 8 7 5.2554 3.1033 -0.7214 9 6 5.8068 4.4646 -0.7589 10 6 7.2289 4.4364 -0.1901 11 6 8.0587 3.4009 -0.9525 12 6 7.4382 2.0137 -0.7711 13 1 7.4009 1.7678 0.2901 14 7 8.2508 1.0187 -1.4754 15 6 8.4528 1.1292 -2.9222 16 6 8.8215 -0.0145 -0.7813 17 1 8.3938 -0.3364 0.1567 18 6 9.9499 -0.6483 -1.2834 19 7 10.6059 -0.1205 -2.2949 20 14 10.5371 -2.2505 -0.5233 21 1 9.4685 -3.2748 -0.6401 22 1 11.7524 -2.7202 -1.2359 23 1 10.8572 -2.0303 0.9100 24 6 6.0211 2.0136 -1.3417 25 16 4.1753 0.7195 1.5490 26 7 3.5576 1.7003 2.7316 27 8 3.5628 -0.5411 1.7838 28 8 5.5827 0.8819 1.6588 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.8323 4.8202 -1.7890 37 1 5.1840 5.1278 -0.1587 38 1 7.6845 5.4205 -0.3004 39 1 7.1932 4.1679 0.8658 40 1 8.0735 3.6563 -2.0121 41 1 9.0778 3.3962 -0.5661 42 1 9.3161 1.7641 -3.1211 43 1 8.6261 0.1382 -3.3415 44 1 7.5662 1.5675 -3.3804 45 1 11.3941 -0.5635 -2.6460 46 1 5.5412 1.0595 -1.1238 47 1 6.0645 2.1653 -2.4203 48 1 3.3543 1.3355 3.6072 49 1 3.3991 2.6396 2.5489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491943064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = -83.751026 kcal Electronic energy + Delta-G solvation = -31587.504036 eV Core-core repulsion = 27484.636396 eV Total energy + Delta-G solvation = -4102.867640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.42768 -37.84277 -37.31466 -36.01339 -35.63389 -34.97897 -33.22212 -32.73432 -31.61669 -30.63049 -28.74623 -26.01698 -25.92603 -24.48248 -23.50067 -21.72654 -21.45375 -20.14915 -19.51345 -18.83928 -18.14375 -17.56453 -16.90160 -16.66315 -16.55457 -15.89248 -15.41040 -15.06737 -14.73978 -14.48107 -14.15913 -14.03198 -13.89086 -13.63517 -13.49984 -13.13262 -12.72265 -12.62846 -12.59896 -12.40328 -12.27524 -12.17402 -12.04767 -11.97244 -11.58413 -11.19671 -11.12273 -11.04250 -10.91711 -10.84080 -10.61037 -10.51469 -10.50666 -10.39276 -10.27539 -10.14673 -9.91717 -9.83750 -9.71600 -8.67161 -8.43582 -6.74155 -5.72358 -3.17597 0.00103 2.34492 2.64262 2.89763 3.42996 3.47090 3.49107 3.50096 3.82201 4.11879 4.53009 4.61080 4.64863 4.87049 4.93573 5.11913 5.19715 5.23227 5.29431 5.41997 5.45353 5.49607 5.55096 5.61313 5.65917 5.69149 5.82562 5.87937 5.91005 5.92472 6.02379 6.04874 6.19949 6.24963 6.32735 6.46104 6.58047 6.71705 6.93869 6.97752 7.08238 7.29491 7.35368 7.68843 7.87699 7.89923 8.43752 9.26334 9.87562 10.36142 11.34300 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.004385 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.316419 B = 6384.020070 C = 7590.959040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.170 4.170 3 C -0.081 4.081 4 C -0.627 4.627 5 H 0.164 0.836 6 C 0.533 3.467 7 O -0.538 6.538 8 N -0.587 5.587 9 C 0.112 3.888 10 C -0.134 4.134 11 C -0.132 4.132 12 C 0.159 3.841 13 H 0.091 0.909 14 N -0.590 5.590 15 C 0.160 3.840 16 C -0.254 4.254 17 H 0.073 0.927 18 C 0.003 3.997 19 N -0.909 5.909 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.084 3.916 25 S 2.623 3.377 26 N -1.245 6.245 27 O -0.948 6.948 28 O -0.924 6.924 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.021 0.979 43 H 0.055 0.945 44 H -0.007 1.007 45 H 0.252 0.748 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.419 0.581 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.264 6.730 4.356 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C -0.120 4.120 4 C -0.736 4.736 5 H 0.182 0.818 6 C 0.318 3.682 7 O -0.417 6.417 8 N -0.318 5.318 9 C -0.009 4.009 10 C -0.173 4.173 11 C -0.172 4.172 12 C 0.050 3.950 13 H 0.109 0.891 14 N -0.312 5.312 15 C 0.015 3.985 16 C -0.384 4.384 17 H 0.091 0.909 18 C -0.195 4.195 19 N -0.554 5.554 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.040 4.040 25 S 2.709 3.291 26 N -0.920 5.920 27 O -0.937 6.937 28 O -0.913 6.913 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.249 0.751 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.778 6.231 4.412 18.433 hybrid contribution 0.089 -0.224 -0.117 0.268 sum -16.689 6.006 4.296 18.250 Atomic orbital electron populations 1.21681 0.95020 1.01932 1.01728 1.22259 0.97274 0.95630 1.05635 1.21233 0.86646 0.98778 1.05330 1.30821 1.09433 1.07057 1.26239 0.81842 1.19146 0.81457 0.88262 0.79380 1.90681 1.56214 1.44743 1.50042 1.48167 1.19098 1.10391 1.54148 1.21720 0.95199 0.82253 1.01772 1.21964 0.94316 1.00081 1.00921 1.22113 0.99928 0.95567 0.99592 1.20664 0.87499 0.88826 0.98015 0.89108 1.43907 1.57173 1.26727 1.03394 1.20801 0.94259 1.00542 0.82886 1.19304 1.06273 1.07373 1.05437 0.90904 1.25021 0.95967 0.99711 0.98765 1.70045 1.19143 1.38696 1.27541 0.86361 0.77866 0.83727 0.78794 1.20988 1.21688 1.20789 1.22662 0.95242 0.87842 0.98253 1.04831 0.74914 0.74004 0.75328 1.53164 1.86459 1.24318 1.28097 1.93537 1.77353 1.39697 1.83126 1.93722 1.28427 1.85330 1.83778 0.92888 0.92311 0.92585 0.91230 0.87564 0.89704 0.89765 0.91246 0.89156 0.91075 0.91354 0.92592 0.91192 0.96048 0.92616 0.98837 0.93749 0.91048 0.90695 0.75054 0.75325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.15 0.37 -0.86 16 2 C -0.17 -1.71 5.65 -26.73 -0.15 -1.86 16 3 C -0.08 -0.83 4.15 -26.73 -0.11 -0.94 16 4 C -0.63 -7.55 2.09 -27.88 -0.06 -7.61 16 5 H 0.16 1.81 6.03 -51.93 -0.31 1.50 16 6 C 0.53 7.33 6.33 -10.98 -0.07 7.26 16 7 O -0.54 -7.80 14.92 5.56 0.08 -7.72 16 8 N -0.59 -8.50 2.98 -173.03 -0.52 -9.01 16 9 C 0.11 1.47 6.42 -3.71 -0.02 1.45 16 10 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 11 C -0.13 -2.34 5.15 -26.69 -0.14 -2.47 16 12 C 0.16 3.19 2.73 -68.03 -0.19 3.00 16 13 H 0.09 2.00 6.69 -51.93 -0.35 1.65 16 14 N -0.59 -14.29 2.81 -173.60 -0.49 -14.78 16 15 C 0.16 3.74 8.09 59.85 0.48 4.23 16 16 C -0.25 -6.95 9.57 -15.06 -0.14 -7.09 16 17 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 18 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 19 N -0.91 -26.08 10.75 55.49 0.60 -25.48 16 20 Si 0.90 22.01 29.57 -169.99 -5.03 16.98 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.08 1.38 5.61 -3.93 -0.02 1.36 16 25 S 2.62 35.14 5.46 -107.50 -0.59 34.55 16 26 N -1.25 -12.42 8.91 60.35 0.54 -11.88 16 27 O -0.95 -13.99 14.89 -57.54 -0.86 -14.84 16 28 O -0.92 -16.14 16.86 -57.54 -0.97 -17.11 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.21 4.90 -51.93 -0.25 0.96 16 34 H 0.08 0.79 7.64 -51.93 -0.40 0.40 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.13 7.03 -51.93 -0.37 0.76 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.02 0.54 7.75 -51.93 -0.40 0.14 16 43 H 0.06 1.43 6.86 -51.93 -0.36 1.07 16 44 H -0.01 -0.13 6.34 -51.93 -0.33 -0.46 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.07 1.13 5.40 -51.93 -0.28 0.85 16 47 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 48 H 0.42 3.25 8.96 -34.47 -0.31 2.95 16 49 H 0.42 3.90 7.80 -34.47 -0.27 3.63 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -32.96 384.31 -9.45 -42.41 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.71 Total: 6.66 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.30 Total: -5.56 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.13 Total: -61.16 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.74 Total: -39.67 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 35.14 SS G_CDS: -0.59 Total: 34.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.96 -9.45 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491943064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.345 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds