Wall clock time and date at job start Wed Apr 1 2020 04:57:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47149 * 2 1
4 4 C 1.53000 * 109.46856 * 180.02562 * 3 2 1
5 5 H 1.08994 * 109.47291 * 55.00418 * 4 3 2
6 6 C 1.50707 * 109.46677 * 175.00069 * 4 3 2
7 7 O 1.21282 * 120.00118 * 29.39596 * 6 4 3
8 8 N 1.34774 * 119.99770 * 209.39058 * 6 4 3
9 9 C 1.46925 * 120.62991 * 184.70149 * 8 6 4
10 10 C 1.53192 * 108.77679 * 126.37318 * 9 8 6
11 11 C 1.53040 * 109.31521 * 54.63202 * 10 9 8
12 12 C 1.53039 * 109.53788 * 298.64049 * 11 10 9
13 13 H 1.09000 * 109.49550 * 301.37981 * 12 11 10
14 14 N 1.46498 * 109.49622 * 181.31564 * 12 11 10
15 15 C 1.46501 * 120.00094 * 299.99755 * 14 12 11
16 16 C 1.36933 * 120.00058 * 119.99890 * 14 12 11
17 17 H 1.08001 * 120.00402 * 24.06239 * 16 14 12
18 18 C 1.38817 * 119.99876 * 204.06502 * 16 14 12
19 19 N 1.31610 * 120.00335 * 11.68844 * 18 16 14
20 20 Si 1.86803 * 119.99660 * 191.68838 * 18 16 14
21 21 H 1.48494 * 109.47526 * 60.00095 * 20 18 16
22 22 H 1.48507 * 109.46795 * 179.97438 * 20 18 16
23 23 H 1.48498 * 109.47114 * 299.99668 * 20 18 16
24 24 C 1.46923 * 120.63161 * 4.42457 * 8 6 4
25 25 S 1.81395 * 109.47358 * 294.99757 * 4 3 2
26 26 N 1.65597 * 104.45078 * 300.00404 * 25 4 3
27 27 O 1.42100 * 110.54100 * 51.63133 * 25 4 3
28 28 O 1.42101 * 110.54628 * 188.37985 * 25 4 3
29 29 H 1.08999 * 109.47248 * 60.00024 * 1 2 3
30 30 H 1.09007 * 109.47192 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47323 * 299.99923 * 1 2 3
32 32 H 1.09000 * 109.47323 * 240.00077 * 2 1 3
33 33 H 1.09003 * 109.47500 * 120.00420 * 2 1 3
34 34 H 1.09004 * 109.47269 * 60.00252 * 3 2 1
35 35 H 1.08999 * 109.47026 * 300.00112 * 3 2 1
36 36 H 1.09001 * 109.58597 * 246.15770 * 9 8 6
37 37 H 1.09000 * 109.58802 * 6.43907 * 9 8 6
38 38 H 1.09004 * 109.49732 * 174.58928 * 10 9 8
39 39 H 1.09005 * 109.49656 * 294.68045 * 10 9 8
40 40 H 1.09001 * 109.45700 * 58.66020 * 11 10 9
41 41 H 1.08995 * 109.46179 * 178.61617 * 11 10 9
42 42 H 1.09000 * 109.47205 * 87.52741 * 15 14 12
43 43 H 1.08996 * 109.47359 * 207.53507 * 15 14 12
44 44 H 1.09004 * 109.47281 * 327.52996 * 15 14 12
45 45 H 0.96997 * 120.00480 * 180.02562 * 19 18 16
46 46 H 1.08999 * 109.59018 * 353.41525 * 24 8 6
47 47 H 1.09005 * 109.58636 * 113.84405 * 24 8 6
48 48 H 0.97005 * 119.99954 * 149.99688 * 26 25 4
49 49 H 0.96998 * 120.00108 * 329.99237 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4424 -0.0006
5 1 3.9329 0.8532 -0.8427
6 6 4.0722 2.8579 -0.1245
7 8 3.4118 3.7762 0.3131
8 7 5.2554 3.1033 -0.7214
9 6 5.8068 4.4646 -0.7589
10 6 7.2289 4.4364 -0.1901
11 6 8.0587 3.4009 -0.9525
12 6 7.4382 2.0137 -0.7711
13 1 7.4009 1.7678 0.2901
14 7 8.2508 1.0187 -1.4754
15 6 8.4528 1.1292 -2.9222
16 6 8.8215 -0.0145 -0.7813
17 1 8.3938 -0.3364 0.1567
18 6 9.9499 -0.6483 -1.2834
19 7 10.6059 -0.1205 -2.2949
20 14 10.5371 -2.2505 -0.5233
21 1 9.4685 -3.2748 -0.6401
22 1 11.7524 -2.7202 -1.2359
23 1 10.8572 -2.0303 0.9100
24 6 6.0211 2.0136 -1.3417
25 16 4.1753 0.7195 1.5490
26 7 3.5576 1.7003 2.7316
27 8 3.5628 -0.5411 1.7838
28 8 5.5827 0.8819 1.6588
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 1.6767 1.9563 0.8900
35 1 1.6766 1.9563 -0.8900
36 1 5.8323 4.8202 -1.7890
37 1 5.1840 5.1278 -0.1587
38 1 7.6845 5.4205 -0.3004
39 1 7.1932 4.1679 0.8658
40 1 8.0735 3.6563 -2.0121
41 1 9.0778 3.3962 -0.5661
42 1 9.3161 1.7641 -3.1211
43 1 8.6261 0.1382 -3.3415
44 1 7.5662 1.5675 -3.3804
45 1 11.3941 -0.5635 -2.6460
46 1 5.5412 1.0595 -1.1238
47 1 6.0645 2.1653 -2.4203
48 1 3.3543 1.3355 3.6072
49 1 3.3991 2.6396 2.5489
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001491943064.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:04
Heat of formation + Delta-G solvation = -107.953371 kcal
Electronic energy + Delta-G solvation = -31588.553529 eV
Core-core repulsion = 27484.636396 eV
Total energy + Delta-G solvation = -4103.917133 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.58501 -39.18356 -38.46519 -37.18647 -36.77965 -36.40565 -34.16369 -34.00228
-33.30178 -31.64887 -30.33568 -27.99297 -26.98418 -25.61157 -25.13721 -22.95113
-22.38766 -21.50578 -20.65930 -20.07460 -19.18370 -18.79595 -18.51846 -17.97408
-17.59009 -16.98112 -16.83905 -16.48235 -15.98124 -15.72539 -15.46869 -15.38833
-15.03902 -14.87929 -14.78576 -14.46376 -14.23047 -13.79528 -13.74300 -13.58321
-13.40953 -13.35420 -13.24118 -13.11982 -12.86665 -12.83630 -12.51929 -12.43782
-12.24721 -12.12581 -12.01608 -11.94031 -11.91495 -11.80973 -11.62032 -11.45713
-11.36301 -11.21741 -10.98221 -10.59979 -9.82660 -8.70647 -7.82506 -5.28753
-1.06506 1.25295 1.46693 1.47560 1.54248 1.59358 1.84656 2.44609
2.51629 2.77256 3.14114 3.32000 3.55625 3.66230 3.69377 3.93618
4.02991 4.09456 4.12546 4.19064 4.23395 4.39538 4.52106 4.58286
4.67652 4.72702 4.78431 4.85456 4.88031 4.92968 4.95459 4.99632
5.11849 5.16497 5.24134 5.31873 5.33667 5.38206 5.47259 5.49661
5.54708 5.69134 5.76371 6.11317 6.24274 6.38794 6.77406 7.19585
7.90603 8.32352 9.21410
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011481 B = 0.004385 C = 0.003688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2438.316419 B = 6384.020070 C = 7590.959040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.174 4.174
3 C -0.079 4.079
4 C -0.619 4.619
5 H 0.173 0.827
6 C 0.534 3.466
7 O -0.540 6.540
8 N -0.590 5.590
9 C 0.110 3.890
10 C -0.124 4.124
11 C -0.125 4.125
12 C 0.154 3.846
13 H 0.065 0.935
14 N -0.605 5.605
15 C 0.175 3.825
16 C -0.261 4.261
17 H 0.062 0.938
18 C -0.045 4.045
19 N -0.934 5.934
20 Si 0.956 3.044
21 H -0.278 1.278
22 H -0.290 1.290
23 H -0.281 1.281
24 C 0.095 3.905
25 S 2.627 3.373
26 N -1.231 6.231
27 O -0.966 6.966
28 O -0.971 6.971
29 H 0.062 0.938
30 H 0.061 0.939
31 H 0.062 0.938
32 H 0.071 0.929
33 H 0.091 0.909
34 H 0.095 0.905
35 H 0.094 0.906
36 H 0.089 0.911
37 H 0.103 0.897
38 H 0.100 0.900
39 H 0.057 0.943
40 H 0.061 0.939
41 H 0.039 0.961
42 H -0.003 1.003
43 H 0.027 0.973
44 H 0.032 0.968
45 H 0.248 0.752
46 H 0.074 0.926
47 H 0.086 0.914
48 H 0.430 0.570
49 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.543 7.926 4.227 21.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.212 4.212
3 C -0.117 4.117
4 C -0.729 4.729
5 H 0.191 0.809
6 C 0.320 3.680
7 O -0.419 6.419
8 N -0.321 5.321
9 C -0.011 4.011
10 C -0.163 4.163
11 C -0.165 4.165
12 C 0.047 3.953
13 H 0.083 0.917
14 N -0.328 5.328
15 C 0.031 3.969
16 C -0.391 4.391
17 H 0.080 0.920
18 C -0.240 4.240
19 N -0.581 5.581
20 Si 0.785 3.215
21 H -0.204 1.204
22 H -0.216 1.216
23 H -0.207 1.207
24 C -0.030 4.030
25 S 2.715 3.285
26 N -0.910 5.910
27 O -0.955 6.955
28 O -0.960 6.960
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.110 0.890
34 H 0.113 0.887
35 H 0.113 0.887
36 H 0.107 0.893
37 H 0.121 0.879
38 H 0.118 0.882
39 H 0.076 0.924
40 H 0.080 0.920
41 H 0.058 0.942
42 H 0.016 0.984
43 H 0.046 0.954
44 H 0.051 0.949
45 H 0.058 0.942
46 H 0.093 0.907
47 H 0.104 0.896
48 H 0.263 0.737
49 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -19.091 7.447 4.333 20.945
hybrid contribution 0.712 -0.528 -0.023 0.887
sum -18.379 6.919 4.311 20.105
Atomic orbital electron populations
1.21700 0.93645 1.02496 1.02581 1.22273 0.98564 0.95337 1.05015
1.21317 0.84905 0.99151 1.06339 1.30766 1.10896 1.06066 1.25208
0.80930 1.19278 0.81166 0.88720 0.78850 1.90685 1.56187 1.45057
1.49940 1.48161 1.19193 1.10394 1.54400 1.21875 0.94324 0.81677
1.03184 1.21896 0.94672 1.00108 0.99630 1.21958 0.98761 0.95408
1.00355 1.20771 0.89123 0.88974 0.96480 0.91662 1.44058 1.57630
1.27318 1.03797 1.20547 0.95002 0.98629 0.82738 1.19471 1.06182
1.08336 1.05139 0.91991 1.25646 0.96359 1.02443 0.99561 1.70183
1.19434 1.39716 1.28723 0.85509 0.77390 0.80674 0.77941 1.20382
1.21596 1.20688 1.22323 0.93106 0.88980 0.98562 1.04372 0.74052
0.74037 0.76007 1.52817 1.85903 1.24224 1.28058 1.93525 1.77250
1.41047 1.83658 1.93687 1.31492 1.86058 1.84791 0.91934 0.91979
0.91862 0.91060 0.89042 0.88677 0.88711 0.89263 0.87878 0.88203
0.92386 0.91997 0.94233 0.98449 0.95418 0.94932 0.94249 0.90741
0.89578 0.73708 0.74590
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16
2 C -0.17 -3.17 5.65 30.59 0.17 -3.00 16
3 C -0.08 -1.40 4.15 30.59 0.13 -1.28 16
4 C -0.62 -13.78 2.09 29.85 0.06 -13.72 16
5 H 0.17 3.54 6.03 -2.39 -0.01 3.52 16
6 C 0.53 13.40 6.33 87.66 0.56 13.96 16
7 O -0.54 -13.99 14.92 -3.04 -0.05 -14.03 16
8 N -0.59 -15.74 2.98 -819.73 -2.44 -18.18 16
9 C 0.11 2.56 6.42 86.36 0.55 3.11 16
10 C -0.12 -3.23 6.08 30.67 0.19 -3.04 16
11 C -0.13 -4.37 5.15 30.62 0.16 -4.21 16
12 C 0.15 6.19 2.73 44.93 0.12 6.31 16
13 H 0.07 2.96 6.69 -2.39 -0.02 2.94 16
14 N -0.61 -29.77 2.81 -703.15 -1.98 -31.75 16
15 C 0.18 8.28 8.09 127.77 1.03 9.31 16
16 C -0.26 -14.62 9.57 84.04 0.80 -13.81 16
17 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16
18 C -0.04 -2.53 5.07 84.86 0.43 -2.10 16
19 N -0.93 -54.88 10.75 21.65 0.23 -54.65 16
20 Si 0.96 46.01 29.57 68.60 2.03 48.04 16
21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16
22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
24 C 0.09 2.98 5.61 86.22 0.48 3.46 16
25 S 2.63 68.94 5.46 -56.49 -0.31 68.63 16
26 N -1.23 -22.98 8.91 37.02 0.33 -22.65 16
27 O -0.97 -28.20 14.89 -127.65 -1.90 -30.11 16
28 O -0.97 -34.51 16.86 -127.65 -2.15 -36.66 16
29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16
31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
33 H 0.09 1.98 4.90 -2.39 -0.01 1.97 16
34 H 0.09 1.51 7.64 -2.39 -0.02 1.49 16
35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.10 2.19 7.03 -2.39 -0.02 2.18 16
38 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16
39 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16
40 H 0.06 2.07 7.72 -2.39 -0.02 2.05 16
41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
42 H 0.00 -0.15 7.75 -2.39 -0.02 -0.16 16
43 H 0.03 1.43 6.86 -2.39 -0.02 1.41 16
44 H 0.03 1.25 6.34 -2.38 -0.02 1.24 16
45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16
46 H 0.07 2.28 5.40 -2.39 -0.01 2.27 16
47 H 0.09 2.53 6.47 -2.38 -0.02 2.51 16
48 H 0.43 6.15 8.96 -96.74 -0.87 5.28 16
49 H 0.42 7.11 7.80 -96.75 -0.75 6.36 16
Total: -1.00 -72.15 384.31 -1.47 -73.62
By element:
Atomic # 1 Polarization: 24.80 SS G_CDS: -0.64 Total: 24.16 kcal
Atomic # 6 Polarization: -11.81 SS G_CDS: 5.40 Total: -6.41 kcal
Atomic # 7 Polarization: -123.37 SS G_CDS: -3.86 Total: -127.23 kcal
Atomic # 8 Polarization: -76.70 SS G_CDS: -4.10 Total: -80.80 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal
Atomic # 16 Polarization: 68.94 SS G_CDS: -0.31 Total: 68.63 kcal
Total: -72.15 -1.47 -73.62 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001491943064.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.335 kcal
(2) G-P(sol) polarization free energy of solvation -72.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.480 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.953 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds