Wall clock time and date at job start Wed Apr 1 2020 04:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.53000 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47291 * 55.00418 * 4 3 2 6 6 C 1.50707 * 109.46677 * 175.00069 * 4 3 2 7 7 O 1.21282 * 120.00118 * 29.39596 * 6 4 3 8 8 N 1.34774 * 119.99770 * 209.39058 * 6 4 3 9 9 C 1.46925 * 120.62991 * 184.70149 * 8 6 4 10 10 C 1.53192 * 108.77679 * 126.37318 * 9 8 6 11 11 C 1.53040 * 109.31521 * 54.63202 * 10 9 8 12 12 C 1.53039 * 109.53788 * 298.64049 * 11 10 9 13 13 H 1.09000 * 109.49550 * 301.37981 * 12 11 10 14 14 N 1.46498 * 109.49622 * 181.31564 * 12 11 10 15 15 C 1.46501 * 120.00094 * 299.99755 * 14 12 11 16 16 C 1.36933 * 120.00058 * 119.99890 * 14 12 11 17 17 H 1.08001 * 120.00402 * 24.06239 * 16 14 12 18 18 C 1.38817 * 119.99876 * 204.06502 * 16 14 12 19 19 N 1.31610 * 120.00335 * 11.68844 * 18 16 14 20 20 Si 1.86803 * 119.99660 * 191.68838 * 18 16 14 21 21 H 1.48494 * 109.47526 * 60.00095 * 20 18 16 22 22 H 1.48507 * 109.46795 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47114 * 299.99668 * 20 18 16 24 24 C 1.46923 * 120.63161 * 4.42457 * 8 6 4 25 25 S 1.81395 * 109.47358 * 294.99757 * 4 3 2 26 26 N 1.65597 * 104.45078 * 300.00404 * 25 4 3 27 27 O 1.42100 * 110.54100 * 51.63133 * 25 4 3 28 28 O 1.42101 * 110.54628 * 188.37985 * 25 4 3 29 29 H 1.08999 * 109.47248 * 60.00024 * 1 2 3 30 30 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 299.99923 * 1 2 3 32 32 H 1.09000 * 109.47323 * 240.00077 * 2 1 3 33 33 H 1.09003 * 109.47500 * 120.00420 * 2 1 3 34 34 H 1.09004 * 109.47269 * 60.00252 * 3 2 1 35 35 H 1.08999 * 109.47026 * 300.00112 * 3 2 1 36 36 H 1.09001 * 109.58597 * 246.15770 * 9 8 6 37 37 H 1.09000 * 109.58802 * 6.43907 * 9 8 6 38 38 H 1.09004 * 109.49732 * 174.58928 * 10 9 8 39 39 H 1.09005 * 109.49656 * 294.68045 * 10 9 8 40 40 H 1.09001 * 109.45700 * 58.66020 * 11 10 9 41 41 H 1.08995 * 109.46179 * 178.61617 * 11 10 9 42 42 H 1.09000 * 109.47205 * 87.52741 * 15 14 12 43 43 H 1.08996 * 109.47359 * 207.53507 * 15 14 12 44 44 H 1.09004 * 109.47281 * 327.52996 * 15 14 12 45 45 H 0.96997 * 120.00480 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.59018 * 353.41525 * 24 8 6 47 47 H 1.09005 * 109.58636 * 113.84405 * 24 8 6 48 48 H 0.97005 * 119.99954 * 149.99688 * 26 25 4 49 49 H 0.96998 * 120.00108 * 329.99237 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0722 2.8579 -0.1245 7 8 3.4118 3.7762 0.3131 8 7 5.2554 3.1033 -0.7214 9 6 5.8068 4.4646 -0.7589 10 6 7.2289 4.4364 -0.1901 11 6 8.0587 3.4009 -0.9525 12 6 7.4382 2.0137 -0.7711 13 1 7.4009 1.7678 0.2901 14 7 8.2508 1.0187 -1.4754 15 6 8.4528 1.1292 -2.9222 16 6 8.8215 -0.0145 -0.7813 17 1 8.3938 -0.3364 0.1567 18 6 9.9499 -0.6483 -1.2834 19 7 10.6059 -0.1205 -2.2949 20 14 10.5371 -2.2505 -0.5233 21 1 9.4685 -3.2748 -0.6401 22 1 11.7524 -2.7202 -1.2359 23 1 10.8572 -2.0303 0.9100 24 6 6.0211 2.0136 -1.3417 25 16 4.1753 0.7195 1.5490 26 7 3.5576 1.7003 2.7316 27 8 3.5628 -0.5411 1.7838 28 8 5.5827 0.8819 1.6588 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.8323 4.8202 -1.7890 37 1 5.1840 5.1278 -0.1587 38 1 7.6845 5.4205 -0.3004 39 1 7.1932 4.1679 0.8658 40 1 8.0735 3.6563 -2.0121 41 1 9.0778 3.3962 -0.5661 42 1 9.3161 1.7641 -3.1211 43 1 8.6261 0.1382 -3.3415 44 1 7.5662 1.5675 -3.3804 45 1 11.3941 -0.5635 -2.6460 46 1 5.5412 1.0595 -1.1238 47 1 6.0645 2.1653 -2.4203 48 1 3.3543 1.3355 3.6072 49 1 3.3991 2.6396 2.5489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491943064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:04 Heat of formation + Delta-G solvation = -107.953371 kcal Electronic energy + Delta-G solvation = -31588.553529 eV Core-core repulsion = 27484.636396 eV Total energy + Delta-G solvation = -4103.917133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.58501 -39.18356 -38.46519 -37.18647 -36.77965 -36.40565 -34.16369 -34.00228 -33.30178 -31.64887 -30.33568 -27.99297 -26.98418 -25.61157 -25.13721 -22.95113 -22.38766 -21.50578 -20.65930 -20.07460 -19.18370 -18.79595 -18.51846 -17.97408 -17.59009 -16.98112 -16.83905 -16.48235 -15.98124 -15.72539 -15.46869 -15.38833 -15.03902 -14.87929 -14.78576 -14.46376 -14.23047 -13.79528 -13.74300 -13.58321 -13.40953 -13.35420 -13.24118 -13.11982 -12.86665 -12.83630 -12.51929 -12.43782 -12.24721 -12.12581 -12.01608 -11.94031 -11.91495 -11.80973 -11.62032 -11.45713 -11.36301 -11.21741 -10.98221 -10.59979 -9.82660 -8.70647 -7.82506 -5.28753 -1.06506 1.25295 1.46693 1.47560 1.54248 1.59358 1.84656 2.44609 2.51629 2.77256 3.14114 3.32000 3.55625 3.66230 3.69377 3.93618 4.02991 4.09456 4.12546 4.19064 4.23395 4.39538 4.52106 4.58286 4.67652 4.72702 4.78431 4.85456 4.88031 4.92968 4.95459 4.99632 5.11849 5.16497 5.24134 5.31873 5.33667 5.38206 5.47259 5.49661 5.54708 5.69134 5.76371 6.11317 6.24274 6.38794 6.77406 7.19585 7.90603 8.32352 9.21410 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.004385 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.316419 B = 6384.020070 C = 7590.959040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.174 4.174 3 C -0.079 4.079 4 C -0.619 4.619 5 H 0.173 0.827 6 C 0.534 3.466 7 O -0.540 6.540 8 N -0.590 5.590 9 C 0.110 3.890 10 C -0.124 4.124 11 C -0.125 4.125 12 C 0.154 3.846 13 H 0.065 0.935 14 N -0.605 5.605 15 C 0.175 3.825 16 C -0.261 4.261 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.934 5.934 20 Si 0.956 3.044 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.095 3.905 25 S 2.627 3.373 26 N -1.231 6.231 27 O -0.966 6.966 28 O -0.971 6.971 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.039 0.961 42 H -0.003 1.003 43 H 0.027 0.973 44 H 0.032 0.968 45 H 0.248 0.752 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.430 0.570 49 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.543 7.926 4.227 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.212 4.212 3 C -0.117 4.117 4 C -0.729 4.729 5 H 0.191 0.809 6 C 0.320 3.680 7 O -0.419 6.419 8 N -0.321 5.321 9 C -0.011 4.011 10 C -0.163 4.163 11 C -0.165 4.165 12 C 0.047 3.953 13 H 0.083 0.917 14 N -0.328 5.328 15 C 0.031 3.969 16 C -0.391 4.391 17 H 0.080 0.920 18 C -0.240 4.240 19 N -0.581 5.581 20 Si 0.785 3.215 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.030 4.030 25 S 2.715 3.285 26 N -0.910 5.910 27 O -0.955 6.955 28 O -0.960 6.960 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.263 0.737 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -19.091 7.447 4.333 20.945 hybrid contribution 0.712 -0.528 -0.023 0.887 sum -18.379 6.919 4.311 20.105 Atomic orbital electron populations 1.21700 0.93645 1.02496 1.02581 1.22273 0.98564 0.95337 1.05015 1.21317 0.84905 0.99151 1.06339 1.30766 1.10896 1.06066 1.25208 0.80930 1.19278 0.81166 0.88720 0.78850 1.90685 1.56187 1.45057 1.49940 1.48161 1.19193 1.10394 1.54400 1.21875 0.94324 0.81677 1.03184 1.21896 0.94672 1.00108 0.99630 1.21958 0.98761 0.95408 1.00355 1.20771 0.89123 0.88974 0.96480 0.91662 1.44058 1.57630 1.27318 1.03797 1.20547 0.95002 0.98629 0.82738 1.19471 1.06182 1.08336 1.05139 0.91991 1.25646 0.96359 1.02443 0.99561 1.70183 1.19434 1.39716 1.28723 0.85509 0.77390 0.80674 0.77941 1.20382 1.21596 1.20688 1.22323 0.93106 0.88980 0.98562 1.04372 0.74052 0.74037 0.76007 1.52817 1.85903 1.24224 1.28058 1.93525 1.77250 1.41047 1.83658 1.93687 1.31492 1.86058 1.84791 0.91934 0.91979 0.91862 0.91060 0.89042 0.88677 0.88711 0.89263 0.87878 0.88203 0.92386 0.91997 0.94233 0.98449 0.95418 0.94932 0.94249 0.90741 0.89578 0.73708 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.17 -3.17 5.65 30.59 0.17 -3.00 16 3 C -0.08 -1.40 4.15 30.59 0.13 -1.28 16 4 C -0.62 -13.78 2.09 29.85 0.06 -13.72 16 5 H 0.17 3.54 6.03 -2.39 -0.01 3.52 16 6 C 0.53 13.40 6.33 87.66 0.56 13.96 16 7 O -0.54 -13.99 14.92 -3.04 -0.05 -14.03 16 8 N -0.59 -15.74 2.98 -819.73 -2.44 -18.18 16 9 C 0.11 2.56 6.42 86.36 0.55 3.11 16 10 C -0.12 -3.23 6.08 30.67 0.19 -3.04 16 11 C -0.13 -4.37 5.15 30.62 0.16 -4.21 16 12 C 0.15 6.19 2.73 44.93 0.12 6.31 16 13 H 0.07 2.96 6.69 -2.39 -0.02 2.94 16 14 N -0.61 -29.77 2.81 -703.15 -1.98 -31.75 16 15 C 0.18 8.28 8.09 127.77 1.03 9.31 16 16 C -0.26 -14.62 9.57 84.04 0.80 -13.81 16 17 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 18 C -0.04 -2.53 5.07 84.86 0.43 -2.10 16 19 N -0.93 -54.88 10.75 21.65 0.23 -54.65 16 20 Si 0.96 46.01 29.57 68.60 2.03 48.04 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.09 2.98 5.61 86.22 0.48 3.46 16 25 S 2.63 68.94 5.46 -56.49 -0.31 68.63 16 26 N -1.23 -22.98 8.91 37.02 0.33 -22.65 16 27 O -0.97 -28.20 14.89 -127.65 -1.90 -30.11 16 28 O -0.97 -34.51 16.86 -127.65 -2.15 -36.66 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.98 4.90 -2.39 -0.01 1.97 16 34 H 0.09 1.51 7.64 -2.39 -0.02 1.49 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.19 7.03 -2.39 -0.02 2.18 16 38 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 40 H 0.06 2.07 7.72 -2.39 -0.02 2.05 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.00 -0.15 7.75 -2.39 -0.02 -0.16 16 43 H 0.03 1.43 6.86 -2.39 -0.02 1.41 16 44 H 0.03 1.25 6.34 -2.38 -0.02 1.24 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.07 2.28 5.40 -2.39 -0.01 2.27 16 47 H 0.09 2.53 6.47 -2.38 -0.02 2.51 16 48 H 0.43 6.15 8.96 -96.74 -0.87 5.28 16 49 H 0.42 7.11 7.80 -96.75 -0.75 6.36 16 Total: -1.00 -72.15 384.31 -1.47 -73.62 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.64 Total: 24.16 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.40 Total: -6.41 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -3.86 Total: -127.23 kcal Atomic # 8 Polarization: -76.70 SS G_CDS: -4.10 Total: -80.80 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 68.94 SS G_CDS: -0.31 Total: 68.63 kcal Total: -72.15 -1.47 -73.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491943064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.335 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds