Wall clock time and date at job start Wed Apr 1 2020 04:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00230 * 2 1 4 4 C 1.53000 * 109.47502 * 180.02562 * 3 2 1 5 5 O 1.42896 * 109.47395 * 64.99310 * 4 3 2 6 6 C 1.35424 * 117.00369 * 180.02562 * 5 4 3 7 7 N 1.32239 * 119.79274 * 359.73517 * 6 5 4 8 8 C 1.31892 * 121.79492 * 179.70506 * 7 6 5 9 9 C 1.38357 * 121.18520 * 0.57165 * 8 7 6 10 10 C 1.38345 * 119.45737 * 359.71873 * 9 8 7 11 11 C 1.39992 * 118.34950 * 0.02562 * 10 9 8 12 12 C 1.47518 * 120.59438 * 180.02562 * 11 10 9 13 13 O 1.21596 * 119.99849 * 137.39750 * 12 11 10 14 14 N 1.34777 * 120.00389 * 317.39675 * 12 11 10 15 15 C 1.47873 * 126.94273 * 4.86870 * 14 12 11 16 16 C 1.56012 * 105.10339 * 181.98040 * 15 14 12 17 17 H 1.09007 * 116.24897 * 158.83484 * 16 15 14 18 18 C 1.57078 * 99.61137 * 32.80352 * 16 15 14 19 19 C 1.49290 * 126.94563 * 184.55258 * 14 12 11 20 20 H 1.08997 * 116.15496 * 15.86511 * 19 14 12 21 21 C 1.58433 * 103.69935 * 246.54414 * 19 14 12 22 22 N 1.47868 * 104.83388 * 288.54734 * 21 19 14 23 23 C 1.36937 * 126.94454 * 182.30377 * 22 21 19 24 24 H 1.07997 * 119.99914 * 185.00104 * 23 22 21 25 25 C 1.38816 * 119.99971 * 5.00621 * 23 22 21 26 26 N 1.31612 * 120.00122 * 354.49753 * 25 23 22 27 27 Si 1.86799 * 119.99829 * 174.50519 * 25 23 22 28 28 H 1.48505 * 109.47384 * 94.99370 * 27 25 23 29 29 H 1.48501 * 109.46758 * 214.99317 * 27 25 23 30 30 H 1.48499 * 109.47362 * 334.99251 * 27 25 23 31 31 H 1.08995 * 109.46816 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46405 * 299.99782 * 1 2 3 33 33 H 1.08997 * 109.46940 * 59.99859 * 1 2 3 34 34 H 1.08997 * 109.47427 * 59.99847 * 3 2 1 35 35 H 1.09007 * 109.46986 * 300.00254 * 3 2 1 36 36 H 1.09005 * 109.46440 * 304.99783 * 4 3 2 37 37 H 1.08992 * 109.47396 * 185.00095 * 4 3 2 38 38 H 1.07993 * 119.40631 * 180.28916 * 8 7 6 39 39 H 1.07993 * 120.27061 * 179.73995 * 9 8 7 40 40 H 1.08000 * 120.82491 * 179.97438 * 10 9 8 41 41 H 1.09000 * 110.31382 * 300.88467 * 15 14 12 42 42 H 1.08996 * 110.31685 * 63.07053 * 15 14 12 43 43 H 1.09004 * 112.36816 * 64.27099 * 18 16 15 44 44 H 1.08993 * 112.37391 * 191.71511 * 18 16 15 45 45 H 1.08998 * 110.19152 * 169.85541 * 21 19 14 46 46 H 1.09002 * 110.78560 * 47.53946 * 21 19 14 47 47 H 0.96995 * 120.00438 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9650 0.5795 -1.2219 6 6 5.2973 0.3983 -1.3830 7 7 6.1324 0.7824 -0.4323 8 6 7.4364 0.6197 -0.5454 9 6 7.9916 0.0471 -1.6760 10 6 7.1646 -0.3679 -2.7045 11 6 5.7836 -0.1900 -2.5600 12 6 4.8562 -0.6150 -3.6256 13 8 3.8224 -1.1876 -3.3393 14 7 5.1548 -0.3687 -4.9166 15 6 6.4044 0.2214 -5.4429 16 6 6.1879 0.3236 -6.9845 17 1 6.8175 1.0393 -7.5134 18 6 4.6409 0.5943 -7.0148 19 6 4.2935 -0.6426 -6.1048 20 1 3.2396 -0.8318 -5.9009 21 6 5.0802 -1.7748 -6.8855 22 7 6.2604 -1.0909 -7.4563 23 6 7.2249 -1.6434 -8.2561 24 1 8.0857 -1.0592 -8.5462 25 6 7.0962 -2.9544 -8.6940 26 7 6.1053 -3.7008 -8.2545 27 14 8.3297 -3.6592 -9.9070 28 1 9.3930 -4.3848 -9.1666 29 1 7.6382 -4.5979 -10.8268 30 1 8.9383 -2.5553 -10.6919 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8515 0.5682 0.8410 37 1 3.9786 2.1764 0.0889 38 1 8.0827 0.9434 0.2570 39 1 9.0617 -0.0751 -1.7548 40 1 7.5743 -0.8172 -3.5970 41 1 6.5639 1.2119 -5.0167 42 1 7.2518 -0.4275 -5.2219 43 1 4.3767 1.5433 -6.5482 44 1 4.2230 0.5011 -8.0170 45 1 4.4584 -2.1844 -7.6816 46 1 5.3938 -2.5669 -6.2056 47 1 6.0156 -4.6169 -8.5602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494686327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:26 Heat of formation + Delta-G solvation = -30.560158 kcal Electronic energy + Delta-G solvation = -31318.303624 eV Core-core repulsion = 27082.298562 eV Total energy + Delta-G solvation = -4236.005062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.08493 -41.15823 -39.47189 -39.05680 -38.34771 -35.50625 -34.08723 -32.89343 -32.40912 -30.96014 -30.34783 -30.19456 -27.29568 -27.04143 -26.14562 -24.93983 -24.58186 -23.19995 -22.35994 -21.40499 -20.40568 -19.55301 -19.03523 -18.15927 -18.04640 -17.87165 -17.21338 -16.91768 -16.72050 -16.49135 -16.22585 -16.01683 -15.83236 -15.66724 -15.15478 -14.78475 -14.55097 -14.31730 -14.19104 -13.85163 -13.66958 -13.38182 -13.34676 -13.28236 -13.05629 -12.84792 -12.67982 -12.56760 -12.42748 -12.31317 -12.14134 -12.02670 -11.93121 -11.88550 -11.53759 -11.26159 -11.01449 -10.80000 -10.70346 -10.55162 -9.65584 -9.44819 -8.91337 -7.83716 -5.19571 -0.25368 0.20583 1.48253 1.49666 1.58971 1.70276 1.90052 1.95626 2.49424 2.71381 2.79116 3.18729 3.33766 3.37883 3.57590 3.75046 3.79624 3.87117 3.91495 3.94563 3.97792 4.10428 4.17537 4.17970 4.34475 4.40910 4.47442 4.48966 4.51669 4.56024 4.63556 4.69124 4.81647 4.82924 4.88468 4.95625 5.00218 5.11127 5.12144 5.23564 5.40984 5.45837 5.53138 5.66069 6.09892 6.12980 6.24044 6.58121 6.72327 7.03026 7.12371 7.71482 8.42877 9.27632 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.003003 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.368577 B = 9322.789179 C =10401.328083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.421 6.421 3 C 0.060 3.940 4 C 0.067 3.933 5 O -0.306 6.306 6 C 0.351 3.649 7 N -0.550 5.550 8 C 0.165 3.835 9 C -0.200 4.200 10 C -0.016 4.016 11 C -0.221 4.221 12 C 0.574 3.426 13 O -0.579 6.579 14 N -0.605 5.605 15 C 0.090 3.910 16 C 0.138 3.862 17 H 0.138 0.862 18 C -0.128 4.128 19 C 0.099 3.901 20 H 0.110 0.890 21 C 0.190 3.810 22 N -0.614 5.614 23 C -0.228 4.228 24 H 0.099 0.901 25 C -0.071 4.071 26 N -0.957 5.957 27 Si 0.977 3.023 28 H -0.292 1.292 29 H -0.303 1.303 30 H -0.260 1.260 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.210 0.790 39 H 0.182 0.818 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.021 0.979 46 H -0.006 1.006 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 17.066 17.164 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C -0.016 4.016 4 C -0.008 4.008 5 O -0.212 6.212 6 C 0.172 3.828 7 N -0.274 5.274 8 C 0.008 3.992 9 C -0.220 4.220 10 C -0.042 4.042 11 C -0.228 4.228 12 C 0.363 3.637 13 O -0.460 6.460 14 N -0.337 5.337 15 C -0.034 4.034 16 C 0.032 3.968 17 H 0.156 0.844 18 C -0.167 4.167 19 C -0.004 4.004 20 H 0.128 0.872 21 C 0.064 3.936 22 N -0.339 5.339 23 C -0.357 4.357 24 H 0.117 0.883 25 C -0.264 4.264 26 N -0.606 5.606 27 Si 0.806 3.194 28 H -0.219 1.219 29 H -0.230 1.230 30 H -0.184 1.184 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.227 0.773 39 H 0.199 0.801 40 H 0.163 0.837 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.039 0.961 46 H 0.013 0.987 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.009 16.708 17.842 24.465 hybrid contribution 0.291 -1.610 -1.355 2.124 sum -0.718 15.098 16.487 22.367 Atomic orbital electron populations 1.22897 0.79368 1.03525 1.01063 1.87970 1.21721 1.28715 1.95635 1.22796 0.90813 0.85253 1.02752 1.22965 0.93933 0.99249 0.84639 1.86413 1.17771 1.75759 1.41249 1.19788 0.84598 0.89720 0.88711 1.67546 1.06705 1.24068 1.29091 1.23441 0.88852 0.89671 0.97201 1.22339 1.03076 1.02644 0.93929 1.21996 0.89957 0.92352 0.99873 1.19835 0.95318 1.11776 0.95823 1.17958 0.85414 0.78572 0.81711 1.90759 1.28558 1.43798 1.82840 1.49167 1.19433 1.60876 1.04267 1.23394 0.85261 0.97824 0.96911 1.23561 0.95577 0.86811 0.90858 0.84402 1.24090 0.97131 0.96280 0.99229 1.24716 0.94728 0.97523 0.83461 0.87250 1.21949 0.87801 0.90815 0.93078 1.45454 1.25563 1.05792 1.57077 1.19545 0.99848 0.95679 1.20612 0.88348 1.25695 1.00481 0.97603 1.02597 1.70167 1.34583 1.07844 1.48025 0.85080 0.77678 0.78102 0.78569 1.21916 1.23015 1.18390 0.89577 0.91575 0.93794 0.87404 0.92486 0.91151 0.87923 0.77339 0.80063 0.83691 0.89110 0.91874 0.88180 0.89782 0.96114 0.98734 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -11.76 10.67 -144.34 -1.54 -13.30 16 3 C 0.06 1.25 6.32 71.98 0.45 1.71 16 4 C 0.07 1.59 5.69 71.98 0.41 2.00 16 5 O -0.31 -10.43 8.95 -67.38 -0.60 -11.04 16 6 C 0.35 11.21 7.48 85.13 0.64 11.85 16 7 N -0.55 -13.61 9.21 -308.00 -2.84 -16.44 16 8 C 0.16 2.82 11.17 84.71 0.95 3.77 16 9 C -0.20 -3.55 10.09 22.32 0.23 -3.32 16 10 C -0.02 -0.43 8.72 22.72 0.20 -0.23 16 11 C -0.22 -7.54 5.56 -19.91 -0.11 -7.65 16 12 C 0.57 24.09 7.30 86.69 0.63 24.72 16 13 O -0.58 -29.18 16.64 9.47 0.16 -29.02 16 14 N -0.60 -23.54 2.95 -766.61 -2.26 -25.80 16 15 C 0.09 2.91 4.93 87.16 0.43 3.34 16 16 C 0.14 4.78 5.47 46.93 0.26 5.03 16 17 H 0.14 3.91 8.14 -2.38 -0.02 3.89 16 18 C -0.13 -4.15 6.86 33.59 0.23 -3.92 16 19 C 0.10 4.05 5.34 47.96 0.26 4.30 16 20 H 0.11 4.54 8.07 -2.39 -0.02 4.52 16 21 C 0.19 9.69 4.90 88.06 0.43 10.12 16 22 N -0.61 -29.35 3.02 -643.56 -1.95 -31.29 16 23 C -0.23 -11.90 10.37 84.03 0.87 -11.03 16 24 H 0.10 4.68 7.83 -2.91 -0.02 4.66 16 25 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 26 N -0.96 -58.53 10.59 21.65 0.23 -58.30 16 27 Si 0.98 44.84 29.56 68.60 2.03 46.87 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.70 8.11 -2.38 -0.02 1.68 16 37 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 38 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.15 3.99 5.65 -2.91 -0.02 3.97 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.18 6.05 -2.39 -0.01 2.16 16 43 H 0.10 2.64 8.14 -2.38 -0.02 2.63 16 44 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.02 1.19 7.34 -2.39 -0.02 1.17 16 46 H -0.01 -0.34 7.79 -2.39 -0.02 -0.35 16 47 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -83.40 386.24 1.79 -81.60 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.98 Total: 17.75 kcal Atomic # 6 Polarization: 31.39 SS G_CDS: 7.58 Total: 38.97 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -6.81 Total: -131.84 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -1.99 Total: -53.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -83.40 1.79 -81.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494686327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.045 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds