Wall clock time and date at job start Wed Apr 1 2020 05:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47317 * 55.00458 * 4 3 2 6 6 C 1.50710 * 109.46737 * 174.99856 * 4 3 2 7 7 O 1.21276 * 119.99890 * 35.00324 * 6 4 3 8 8 N 1.34775 * 119.99909 * 214.99909 * 6 4 3 9 9 C 1.46502 * 120.00077 * 0.02562 * 8 6 4 10 10 C 1.52995 * 109.47391 * 89.99582 * 9 8 6 11 11 C 1.46494 * 119.99944 * 180.02562 * 8 6 4 12 12 H 1.08995 * 110.64267 * 358.31520 * 11 8 6 13 13 C 1.55154 * 110.72166 * 234.97614 * 11 8 6 14 14 C 1.54902 * 101.58725 * 277.13831 * 13 11 8 15 15 N 1.47428 * 104.83304 * 322.99421 * 14 13 11 16 16 C 1.36935 * 125.64864 * 204.16350 * 15 14 13 17 17 H 1.08003 * 119.99960 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00329 * 359.95518 * 16 15 14 19 19 N 1.31617 * 119.99710 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00161 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47350 * 60.00009 * 20 18 16 22 22 H 1.48501 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47157 * 299.99368 * 20 18 16 24 24 C 1.47029 * 108.70011 * 24.12118 * 15 14 13 25 25 S 1.81394 * 109.47510 * 294.99746 * 4 3 2 26 26 N 1.65599 * 104.45111 * 300.00555 * 25 4 3 27 27 O 1.42107 * 110.54424 * 51.62844 * 25 4 3 28 28 O 1.42102 * 110.54425 * 188.37655 * 25 4 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 34 34 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 35 35 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 36 36 H 1.09000 * 109.46909 * 210.00019 * 9 8 6 37 37 H 1.09001 * 109.46946 * 329.99702 * 9 8 6 38 38 H 1.09004 * 109.47056 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47450 * 300.00105 * 10 9 8 40 40 H 1.09001 * 109.46977 * 60.00139 * 10 9 8 41 41 H 1.09006 * 111.00470 * 35.21812 * 13 11 8 42 42 H 1.09007 * 111.00328 * 159.06363 * 13 11 8 43 43 H 1.08994 * 110.37523 * 204.15009 * 14 13 11 44 44 H 1.09001 * 110.45972 * 81.87379 * 14 13 11 45 45 H 0.97006 * 120.00312 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.87682 * 239.52702 * 24 15 14 47 47 H 1.09000 * 110.00989 * 118.43779 * 24 15 14 48 48 H 0.97004 * 120.00080 * 359.97438 * 26 25 4 49 49 H 0.97000 * 120.00098 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0722 2.8581 -0.1232 7 8 3.4629 3.7659 0.4017 8 7 5.1985 3.1151 -0.8173 9 6 5.9342 2.0186 -1.4518 10 6 5.4107 1.8089 -2.8741 11 6 5.6871 4.4910 -0.9373 12 1 5.0115 5.1837 -0.4356 13 6 5.8712 4.8802 -2.4279 14 6 7.2689 4.2866 -2.7340 15 7 8.0479 4.4996 -1.5006 16 6 9.4127 4.5785 -1.4223 17 1 9.8905 4.7377 -0.4669 18 6 10.1822 4.4535 -2.5708 19 7 9.6001 4.2586 -3.7350 20 14 12.0441 4.5604 -2.4638 21 1 12.5513 3.4857 -1.5734 22 1 12.6280 4.3963 -3.8193 23 1 12.4331 5.8838 -1.9137 24 6 7.1165 4.6143 -0.3688 25 16 4.1740 0.7202 1.5510 26 7 3.5552 1.7013 2.7328 27 8 3.5614 -0.5404 1.7858 28 8 5.5813 0.8827 1.6618 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 1.6764 1.9564 0.8900 36 1 6.9952 2.2660 -1.4879 37 1 5.7937 1.1048 -0.8745 38 1 5.9579 0.9927 -3.3460 39 1 4.3498 1.5615 -2.8380 40 1 5.5513 2.7227 -3.4514 41 1 5.1052 4.4172 -3.0501 42 1 5.8711 5.9632 -2.5518 43 1 7.7300 4.8130 -3.5696 44 1 7.1908 3.2219 -2.9541 45 1 10.1378 4.1709 -4.5376 46 1 7.2403 5.5825 0.1164 47 1 7.3006 3.8143 0.3483 48 1 3.0045 2.4627 2.4920 49 1 3.7441 1.5151 3.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494905096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:05 Heat of formation + Delta-G solvation = -69.694533 kcal Electronic energy + Delta-G solvation = -31493.038003 eV Core-core repulsion = 27390.779898 eV Total energy + Delta-G solvation = -4102.258105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -40.49899 -37.96398 -37.46386 -36.19310 -35.66542 -34.94453 -33.25602 -32.43505 -30.92800 -30.70096 -29.24711 -27.11708 -25.33033 -24.47845 -23.13556 -21.72792 -21.10603 -20.23771 -19.66768 -18.80388 -18.33020 -17.79589 -17.09714 -16.96419 -16.34064 -15.95258 -15.75473 -14.93487 -14.75544 -14.52613 -14.37572 -14.12491 -13.79906 -13.74521 -13.18365 -12.98452 -12.75230 -12.59477 -12.37762 -12.36107 -12.27487 -12.20758 -12.05583 -11.73679 -11.64152 -11.60600 -11.27372 -11.18869 -11.11138 -11.02441 -10.86597 -10.58710 -10.54622 -10.51504 -10.30886 -10.17036 -9.90308 -9.70976 -9.57792 -8.68341 -8.48294 -6.87047 -5.69021 -3.10311 -0.13099 2.39062 2.56735 2.91742 3.31332 3.39796 3.44215 3.45206 3.76583 4.06231 4.47242 4.53418 4.56031 4.78265 4.86609 5.09690 5.19158 5.28417 5.33430 5.38479 5.44569 5.49162 5.53203 5.56112 5.58450 5.67364 5.78956 5.80918 5.88337 5.92861 5.94307 6.03012 6.15910 6.24053 6.31540 6.36225 6.56422 6.57179 6.67958 6.88514 6.92943 7.40975 7.46190 7.59854 7.80019 7.99045 8.31536 9.18574 9.78840 10.42553 11.34687 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.003336 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.775129 B = 8390.935848 C = 8802.429702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.169 4.169 3 C -0.084 4.084 4 C -0.620 4.620 5 H 0.163 0.837 6 C 0.533 3.467 7 O -0.535 6.535 8 N -0.570 5.570 9 C 0.087 3.913 10 C -0.181 4.181 11 C 0.124 3.876 12 H 0.103 0.897 13 C -0.157 4.157 14 C 0.136 3.864 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.123 3.877 25 S 2.625 3.375 26 N -1.244 6.244 27 O -0.950 6.950 28 O -0.943 6.943 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.032 0.968 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.420 0.580 49 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.480 -7.142 6.166 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C -0.123 4.123 4 C -0.730 4.730 5 H 0.180 0.820 6 C 0.317 3.683 7 O -0.413 6.413 8 N -0.300 5.300 9 C -0.035 4.035 10 C -0.238 4.238 11 C 0.021 3.979 12 H 0.121 0.879 13 C -0.197 4.197 14 C 0.012 3.988 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.004 4.004 25 S 2.712 3.288 26 N -0.921 5.921 27 O -0.939 6.939 28 O -0.931 6.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.934 -7.564 6.251 19.571 hybrid contribution 0.567 0.616 -0.244 0.872 sum -16.366 -6.948 6.006 18.767 Atomic orbital electron populations 1.21684 0.94913 1.01971 1.01871 1.22261 0.97403 0.95481 1.05548 1.21275 0.86535 0.98949 1.05505 1.30709 1.09462 1.07499 1.25286 0.81965 1.19071 0.81171 0.87851 0.80191 1.90684 1.56999 1.45361 1.48269 1.47894 1.23424 1.09134 1.49517 1.21983 1.00414 0.88249 0.92877 1.22509 1.00099 1.04156 0.97071 1.22274 0.96250 0.80926 0.98459 0.87872 1.23447 1.01071 1.01255 0.93894 1.22315 0.85911 0.98473 0.92082 1.44511 1.01561 1.85140 1.01646 1.19038 0.80049 1.41925 0.93937 0.90504 1.24747 0.98159 1.02189 0.95387 1.69768 1.33153 1.56455 0.97792 0.86153 0.84892 0.77915 0.76539 1.21198 1.21643 1.21226 1.21685 0.87784 0.98900 0.91995 1.04642 0.74524 0.74160 0.75457 1.52973 1.70916 1.46653 1.21585 1.93548 1.77245 1.40135 1.82958 1.93683 1.29610 1.85687 1.84170 0.92788 0.92305 0.92512 0.91255 0.87538 0.89382 0.89835 0.86066 0.92094 0.91139 0.93402 0.89786 0.91650 0.90872 0.87625 0.95063 0.93722 0.94746 0.94797 0.75107 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.17 -1.47 5.65 -26.73 -0.15 -1.62 16 3 C -0.08 -0.77 4.21 -26.73 -0.11 -0.89 16 4 C -0.62 -6.89 1.92 -27.88 -0.05 -6.95 16 5 H 0.16 1.53 5.52 -51.92 -0.29 1.24 16 6 C 0.53 7.62 6.43 -10.98 -0.07 7.55 16 7 O -0.53 -8.29 14.87 5.56 0.08 -8.21 16 8 N -0.57 -9.06 2.45 -164.04 -0.40 -9.46 16 9 C 0.09 1.37 4.79 -4.04 -0.02 1.35 16 10 C -0.18 -2.43 8.88 37.16 0.33 -2.10 16 11 C 0.12 2.19 3.58 -66.10 -0.24 1.95 16 12 H 0.10 1.77 6.99 -51.93 -0.36 1.40 16 13 C -0.16 -2.83 6.09 -24.59 -0.15 -2.98 16 14 C 0.14 3.03 4.64 -2.53 -0.01 3.02 16 15 N -0.60 -14.63 2.97 -170.07 -0.50 -15.14 16 16 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 17 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.12 2.56 6.24 -3.06 -0.02 2.54 16 25 S 2.62 31.74 5.38 -107.50 -0.58 31.16 16 26 N -1.24 -12.00 9.13 60.35 0.55 -11.45 16 27 O -0.95 -12.33 14.89 -57.54 -0.86 -13.18 16 28 O -0.94 -15.16 17.34 -57.54 -1.00 -16.16 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 1.06 4.90 -51.93 -0.25 0.80 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.70 6.96 -51.93 -0.36 0.34 16 36 H 0.12 2.35 5.19 -51.93 -0.27 2.08 16 37 H 0.06 0.84 5.68 -51.93 -0.29 0.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 40 H 0.08 1.26 4.33 -51.93 -0.22 1.03 16 41 H 0.06 1.05 6.46 -51.93 -0.34 0.72 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.11 2.72 5.87 -51.93 -0.31 2.41 16 44 H 0.03 0.69 4.03 -51.93 -0.21 0.49 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 48 H 0.42 3.72 6.95 -34.47 -0.24 3.48 16 49 H 0.42 3.23 8.96 -34.47 -0.31 2.92 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -32.54 374.73 -9.08 -41.63 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.19 Total: 8.88 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.38 Total: -5.32 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.20 Total: -61.15 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.77 Total: -37.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 31.74 SS G_CDS: -0.58 Total: 31.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.54 -9.08 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494905096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.066 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds