Wall clock time and date at job start Wed Apr 1 2020 05:01:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53006 * 109.46626 * 2 1
4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1
5 5 H 1.09001 * 109.47317 * 55.00458 * 4 3 2
6 6 C 1.50710 * 109.46737 * 174.99856 * 4 3 2
7 7 O 1.21276 * 119.99890 * 35.00324 * 6 4 3
8 8 N 1.34775 * 119.99909 * 214.99909 * 6 4 3
9 9 C 1.46502 * 120.00077 * 0.02562 * 8 6 4
10 10 C 1.52995 * 109.47391 * 89.99582 * 9 8 6
11 11 C 1.46494 * 119.99944 * 180.02562 * 8 6 4
12 12 H 1.08995 * 110.64267 * 358.31520 * 11 8 6
13 13 C 1.55154 * 110.72166 * 234.97614 * 11 8 6
14 14 C 1.54902 * 101.58725 * 277.13831 * 13 11 8
15 15 N 1.47428 * 104.83304 * 322.99421 * 14 13 11
16 16 C 1.36935 * 125.64864 * 204.16350 * 15 14 13
17 17 H 1.08003 * 119.99960 * 179.97438 * 16 15 14
18 18 C 1.38808 * 120.00329 * 359.95518 * 16 15 14
19 19 N 1.31617 * 119.99710 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00161 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47350 * 60.00009 * 20 18 16
22 22 H 1.48501 * 109.46994 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47157 * 299.99368 * 20 18 16
24 24 C 1.47029 * 108.70011 * 24.12118 * 15 14 13
25 25 S 1.81394 * 109.47510 * 294.99746 * 4 3 2
26 26 N 1.65599 * 104.45111 * 300.00555 * 25 4 3
27 27 O 1.42107 * 110.54424 * 51.62844 * 25 4 3
28 28 O 1.42102 * 110.54425 * 188.37655 * 25 4 3
29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3
30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3
32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3
33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3
34 34 H 1.09000 * 109.47050 * 299.99699 * 3 2 1
35 35 H 1.09001 * 109.46801 * 59.99811 * 3 2 1
36 36 H 1.09000 * 109.46909 * 210.00019 * 9 8 6
37 37 H 1.09001 * 109.46946 * 329.99702 * 9 8 6
38 38 H 1.09004 * 109.47056 * 180.02562 * 10 9 8
39 39 H 1.09000 * 109.47450 * 300.00105 * 10 9 8
40 40 H 1.09001 * 109.46977 * 60.00139 * 10 9 8
41 41 H 1.09006 * 111.00470 * 35.21812 * 13 11 8
42 42 H 1.09007 * 111.00328 * 159.06363 * 13 11 8
43 43 H 1.08994 * 110.37523 * 204.15009 * 14 13 11
44 44 H 1.09001 * 110.45972 * 81.87379 * 14 13 11
45 45 H 0.97006 * 120.00312 * 180.02562 * 19 18 16
46 46 H 1.09001 * 109.87682 * 239.52702 * 24 15 14
47 47 H 1.09000 * 110.00989 * 118.43779 * 24 15 14
48 48 H 0.97004 * 120.00080 * 359.97438 * 26 25 4
49 49 H 0.97000 * 120.00098 * 180.02562 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 1 3.9336 0.8531 -0.8410
6 6 4.0722 2.8581 -0.1232
7 8 3.4629 3.7659 0.4017
8 7 5.1985 3.1151 -0.8173
9 6 5.9342 2.0186 -1.4518
10 6 5.4107 1.8089 -2.8741
11 6 5.6871 4.4910 -0.9373
12 1 5.0115 5.1837 -0.4356
13 6 5.8712 4.8802 -2.4279
14 6 7.2689 4.2866 -2.7340
15 7 8.0479 4.4996 -1.5006
16 6 9.4127 4.5785 -1.4223
17 1 9.8905 4.7377 -0.4669
18 6 10.1822 4.4535 -2.5708
19 7 9.6001 4.2586 -3.7350
20 14 12.0441 4.5604 -2.4638
21 1 12.5513 3.4857 -1.5734
22 1 12.6280 4.3963 -3.8193
23 1 12.4331 5.8838 -1.9137
24 6 7.1165 4.6143 -0.3688
25 16 4.1740 0.7202 1.5510
26 7 3.5552 1.7013 2.7328
27 8 3.5614 -0.5404 1.7858
28 8 5.5813 0.8827 1.6618
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.6765 1.9564 -0.8900
35 1 1.6764 1.9564 0.8900
36 1 6.9952 2.2660 -1.4879
37 1 5.7937 1.1048 -0.8745
38 1 5.9579 0.9927 -3.3460
39 1 4.3498 1.5615 -2.8380
40 1 5.5513 2.7227 -3.4514
41 1 5.1052 4.4172 -3.0501
42 1 5.8711 5.9632 -2.5518
43 1 7.7300 4.8130 -3.5696
44 1 7.1908 3.2219 -2.9541
45 1 10.1378 4.1709 -4.5376
46 1 7.2403 5.5825 0.1164
47 1 7.3006 3.8143 0.3483
48 1 3.0045 2.4627 2.4920
49 1 3.7441 1.5151 3.6659
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001494905096.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:05
Heat of formation + Delta-G solvation = -69.694533 kcal
Electronic energy + Delta-G solvation = -31493.038003 eV
Core-core repulsion = 27390.779898 eV
Total energy + Delta-G solvation = -4102.258105 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 2.93 seconds
Orbital eigenvalues (eV)
-40.49899 -37.96398 -37.46386 -36.19310 -35.66542 -34.94453 -33.25602 -32.43505
-30.92800 -30.70096 -29.24711 -27.11708 -25.33033 -24.47845 -23.13556 -21.72792
-21.10603 -20.23771 -19.66768 -18.80388 -18.33020 -17.79589 -17.09714 -16.96419
-16.34064 -15.95258 -15.75473 -14.93487 -14.75544 -14.52613 -14.37572 -14.12491
-13.79906 -13.74521 -13.18365 -12.98452 -12.75230 -12.59477 -12.37762 -12.36107
-12.27487 -12.20758 -12.05583 -11.73679 -11.64152 -11.60600 -11.27372 -11.18869
-11.11138 -11.02441 -10.86597 -10.58710 -10.54622 -10.51504 -10.30886 -10.17036
-9.90308 -9.70976 -9.57792 -8.68341 -8.48294 -6.87047 -5.69021 -3.10311
-0.13099 2.39062 2.56735 2.91742 3.31332 3.39796 3.44215 3.45206
3.76583 4.06231 4.47242 4.53418 4.56031 4.78265 4.86609 5.09690
5.19158 5.28417 5.33430 5.38479 5.44569 5.49162 5.53203 5.56112
5.58450 5.67364 5.78956 5.80918 5.88337 5.92861 5.94307 6.03012
6.15910 6.24053 6.31540 6.36225 6.56422 6.57179 6.67958 6.88514
6.92943 7.40975 7.46190 7.59854 7.80019 7.99045 8.31536 9.18574
9.78840 10.42553 11.34687
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018299 B = 0.003336 C = 0.003180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1529.775129 B = 8390.935848 C = 8802.429702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.169 4.169
3 C -0.084 4.084
4 C -0.620 4.620
5 H 0.163 0.837
6 C 0.533 3.467
7 O -0.535 6.535
8 N -0.570 5.570
9 C 0.087 3.913
10 C -0.181 4.181
11 C 0.124 3.876
12 H 0.103 0.897
13 C -0.157 4.157
14 C 0.136 3.864
15 N -0.602 5.602
16 C -0.221 4.221
17 H 0.077 0.923
18 C -0.009 4.009
19 N -0.923 5.923
20 Si 0.914 3.086
21 H -0.285 1.285
22 H -0.291 1.291
23 H -0.286 1.286
24 C 0.123 3.877
25 S 2.625 3.375
26 N -1.244 6.244
27 O -0.950 6.950
28 O -0.943 6.943
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.056 0.944
32 H 0.069 0.931
33 H 0.107 0.893
34 H 0.088 0.912
35 H 0.083 0.917
36 H 0.121 0.879
37 H 0.061 0.939
38 H 0.070 0.930
39 H 0.047 0.953
40 H 0.083 0.917
41 H 0.065 0.935
42 H 0.073 0.927
43 H 0.106 0.894
44 H 0.032 0.968
45 H 0.252 0.748
46 H 0.035 0.965
47 H 0.034 0.966
48 H 0.420 0.580
49 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.480 -7.142 6.166 19.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.207 4.207
3 C -0.123 4.123
4 C -0.730 4.730
5 H 0.180 0.820
6 C 0.317 3.683
7 O -0.413 6.413
8 N -0.300 5.300
9 C -0.035 4.035
10 C -0.238 4.238
11 C 0.021 3.979
12 H 0.121 0.879
13 C -0.197 4.197
14 C 0.012 3.988
15 N -0.329 5.329
16 C -0.349 4.349
17 H 0.095 0.905
18 C -0.205 4.205
19 N -0.572 5.572
20 Si 0.745 3.255
21 H -0.212 1.212
22 H -0.216 1.216
23 H -0.212 1.212
24 C -0.004 4.004
25 S 2.712 3.288
26 N -0.921 5.921
27 O -0.939 6.939
28 O -0.931 6.931
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.087 0.913
33 H 0.125 0.875
34 H 0.106 0.894
35 H 0.102 0.898
36 H 0.139 0.861
37 H 0.079 0.921
38 H 0.089 0.911
39 H 0.066 0.934
40 H 0.102 0.898
41 H 0.084 0.916
42 H 0.091 0.909
43 H 0.124 0.876
44 H 0.049 0.951
45 H 0.063 0.937
46 H 0.053 0.947
47 H 0.052 0.948
48 H 0.249 0.751
49 H 0.250 0.750
Dipole moment (debyes) X Y Z Total
from point charges -16.934 -7.564 6.251 19.571
hybrid contribution 0.567 0.616 -0.244 0.872
sum -16.366 -6.948 6.006 18.767
Atomic orbital electron populations
1.21684 0.94913 1.01971 1.01871 1.22261 0.97403 0.95481 1.05548
1.21275 0.86535 0.98949 1.05505 1.30709 1.09462 1.07499 1.25286
0.81965 1.19071 0.81171 0.87851 0.80191 1.90684 1.56999 1.45361
1.48269 1.47894 1.23424 1.09134 1.49517 1.21983 1.00414 0.88249
0.92877 1.22509 1.00099 1.04156 0.97071 1.22274 0.96250 0.80926
0.98459 0.87872 1.23447 1.01071 1.01255 0.93894 1.22315 0.85911
0.98473 0.92082 1.44511 1.01561 1.85140 1.01646 1.19038 0.80049
1.41925 0.93937 0.90504 1.24747 0.98159 1.02189 0.95387 1.69768
1.33153 1.56455 0.97792 0.86153 0.84892 0.77915 0.76539 1.21198
1.21643 1.21226 1.21685 0.87784 0.98900 0.91995 1.04642 0.74524
0.74160 0.75457 1.52973 1.70916 1.46653 1.21585 1.93548 1.77245
1.40135 1.82958 1.93683 1.29610 1.85687 1.84170 0.92788 0.92305
0.92512 0.91255 0.87538 0.89382 0.89835 0.86066 0.92094 0.91139
0.93402 0.89786 0.91650 0.90872 0.87625 0.95063 0.93722 0.94746
0.94797 0.75107 0.75008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16
2 C -0.17 -1.47 5.65 -26.73 -0.15 -1.62 16
3 C -0.08 -0.77 4.21 -26.73 -0.11 -0.89 16
4 C -0.62 -6.89 1.92 -27.88 -0.05 -6.95 16
5 H 0.16 1.53 5.52 -51.92 -0.29 1.24 16
6 C 0.53 7.62 6.43 -10.98 -0.07 7.55 16
7 O -0.53 -8.29 14.87 5.56 0.08 -8.21 16
8 N -0.57 -9.06 2.45 -164.04 -0.40 -9.46 16
9 C 0.09 1.37 4.79 -4.04 -0.02 1.35 16
10 C -0.18 -2.43 8.88 37.16 0.33 -2.10 16
11 C 0.12 2.19 3.58 -66.10 -0.24 1.95 16
12 H 0.10 1.77 6.99 -51.93 -0.36 1.40 16
13 C -0.16 -2.83 6.09 -24.59 -0.15 -2.98 16
14 C 0.14 3.03 4.64 -2.53 -0.01 3.02 16
15 N -0.60 -14.63 2.97 -170.07 -0.50 -15.14 16
16 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16
17 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16
18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16
19 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16
20 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16
21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16
22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
24 C 0.12 2.56 6.24 -3.06 -0.02 2.54 16
25 S 2.62 31.74 5.38 -107.50 -0.58 31.16 16
26 N -1.24 -12.00 9.13 60.35 0.55 -11.45 16
27 O -0.95 -12.33 14.89 -57.54 -0.86 -13.18 16
28 O -0.94 -15.16 17.34 -57.54 -1.00 -16.16 16
29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.11 1.06 4.90 -51.93 -0.25 0.80 16
34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.08 0.70 6.96 -51.93 -0.36 0.34 16
36 H 0.12 2.35 5.19 -51.93 -0.27 2.08 16
37 H 0.06 0.84 5.68 -51.93 -0.29 0.54 16
38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16
39 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16
40 H 0.08 1.26 4.33 -51.93 -0.22 1.03 16
41 H 0.06 1.05 6.46 -51.93 -0.34 0.72 16
42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
43 H 0.11 2.72 5.87 -51.93 -0.31 2.41 16
44 H 0.03 0.69 4.03 -51.93 -0.21 0.49 16
45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
47 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16
48 H 0.42 3.72 6.95 -34.47 -0.24 3.48 16
49 H 0.42 3.23 8.96 -34.47 -0.31 2.92 16
LS Contribution 374.73 15.07 5.65 5.65
Total: -1.00 -32.54 374.73 -9.08 -41.63
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: -7.19 Total: 8.88 kcal
Atomic # 6 Polarization: -4.94 SS G_CDS: -0.38 Total: -5.32 kcal
Atomic # 7 Polarization: -61.35 SS G_CDS: 0.20 Total: -61.15 kcal
Atomic # 8 Polarization: -35.77 SS G_CDS: -1.77 Total: -37.54 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal
Atomic # 16 Polarization: 31.74 SS G_CDS: -0.58 Total: 31.16 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -32.54 -9.08 -41.63 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001494905096.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.066 kcal
(2) G-P(sol) polarization free energy of solvation -32.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.94 seconds