Wall clock time and date at job start Wed Apr 1 2020 05:01:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53006 * 109.46626 * 2 1
4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1
5 5 H 1.09001 * 109.47317 * 55.00458 * 4 3 2
6 6 C 1.50710 * 109.46737 * 174.99856 * 4 3 2
7 7 O 1.21276 * 119.99890 * 35.00324 * 6 4 3
8 8 N 1.34775 * 119.99909 * 214.99909 * 6 4 3
9 9 C 1.46502 * 120.00077 * 0.02562 * 8 6 4
10 10 C 1.52995 * 109.47391 * 89.99582 * 9 8 6
11 11 C 1.46494 * 119.99944 * 180.02562 * 8 6 4
12 12 H 1.08995 * 110.64267 * 358.31520 * 11 8 6
13 13 C 1.55154 * 110.72166 * 234.97614 * 11 8 6
14 14 C 1.54902 * 101.58725 * 277.13831 * 13 11 8
15 15 N 1.47428 * 104.83304 * 322.99421 * 14 13 11
16 16 C 1.36935 * 125.64864 * 204.16350 * 15 14 13
17 17 H 1.08003 * 119.99960 * 179.97438 * 16 15 14
18 18 C 1.38808 * 120.00329 * 359.95518 * 16 15 14
19 19 N 1.31617 * 119.99710 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00161 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47350 * 60.00009 * 20 18 16
22 22 H 1.48501 * 109.46994 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47157 * 299.99368 * 20 18 16
24 24 C 1.47029 * 108.70011 * 24.12118 * 15 14 13
25 25 S 1.81394 * 109.47510 * 294.99746 * 4 3 2
26 26 N 1.65599 * 104.45111 * 300.00555 * 25 4 3
27 27 O 1.42107 * 110.54424 * 51.62844 * 25 4 3
28 28 O 1.42102 * 110.54425 * 188.37655 * 25 4 3
29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3
30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47839 * 299.99931 * 1 2 3
32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3
33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3
34 34 H 1.09000 * 109.47050 * 299.99699 * 3 2 1
35 35 H 1.09001 * 109.46801 * 59.99811 * 3 2 1
36 36 H 1.09000 * 109.46909 * 210.00019 * 9 8 6
37 37 H 1.09001 * 109.46946 * 329.99702 * 9 8 6
38 38 H 1.09004 * 109.47056 * 180.02562 * 10 9 8
39 39 H 1.09000 * 109.47450 * 300.00105 * 10 9 8
40 40 H 1.09001 * 109.46977 * 60.00139 * 10 9 8
41 41 H 1.09006 * 111.00470 * 35.21812 * 13 11 8
42 42 H 1.09007 * 111.00328 * 159.06363 * 13 11 8
43 43 H 1.08994 * 110.37523 * 204.15009 * 14 13 11
44 44 H 1.09001 * 110.45972 * 81.87379 * 14 13 11
45 45 H 0.97006 * 120.00312 * 180.02562 * 19 18 16
46 46 H 1.09001 * 109.87682 * 239.52702 * 24 15 14
47 47 H 1.09000 * 110.00989 * 118.43779 * 24 15 14
48 48 H 0.97004 * 120.00080 * 359.97438 * 26 25 4
49 49 H 0.97000 * 120.00098 * 180.02562 * 26 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 1 3.9336 0.8531 -0.8410
6 6 4.0722 2.8581 -0.1232
7 8 3.4629 3.7659 0.4017
8 7 5.1985 3.1151 -0.8173
9 6 5.9342 2.0186 -1.4518
10 6 5.4107 1.8089 -2.8741
11 6 5.6871 4.4910 -0.9373
12 1 5.0115 5.1837 -0.4356
13 6 5.8712 4.8802 -2.4279
14 6 7.2689 4.2866 -2.7340
15 7 8.0479 4.4996 -1.5006
16 6 9.4127 4.5785 -1.4223
17 1 9.8905 4.7377 -0.4669
18 6 10.1822 4.4535 -2.5708
19 7 9.6001 4.2586 -3.7350
20 14 12.0441 4.5604 -2.4638
21 1 12.5513 3.4857 -1.5734
22 1 12.6280 4.3963 -3.8193
23 1 12.4331 5.8838 -1.9137
24 6 7.1165 4.6143 -0.3688
25 16 4.1740 0.7202 1.5510
26 7 3.5552 1.7013 2.7328
27 8 3.5614 -0.5404 1.7858
28 8 5.5813 0.8827 1.6618
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.6765 1.9564 -0.8900
35 1 1.6764 1.9564 0.8900
36 1 6.9952 2.2660 -1.4879
37 1 5.7937 1.1048 -0.8745
38 1 5.9579 0.9927 -3.3460
39 1 4.3498 1.5615 -2.8380
40 1 5.5513 2.7227 -3.4514
41 1 5.1052 4.4172 -3.0501
42 1 5.8711 5.9632 -2.5518
43 1 7.7300 4.8130 -3.5696
44 1 7.1908 3.2219 -2.9541
45 1 10.1378 4.1709 -4.5376
46 1 7.2403 5.5825 0.1164
47 1 7.3006 3.8143 0.3483
48 1 3.0045 2.4627 2.4920
49 1 3.7441 1.5151 3.6659
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001494905096.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:04
Heat of formation + Delta-G solvation = -93.400421 kcal
Electronic energy + Delta-G solvation = -31494.065968 eV
Core-core repulsion = 27390.779898 eV
Total energy + Delta-G solvation = -4103.286069 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-41.74325 -39.37538 -38.49985 -37.25233 -36.54672 -36.37674 -34.20846 -34.07723
-32.08656 -31.83174 -30.91540 -28.66153 -26.66109 -25.88417 -24.34092 -22.46299
-22.35732 -22.03458 -20.69958 -20.04175 -19.28769 -18.96107 -18.82573 -18.13748
-17.46518 -16.93457 -16.82035 -16.65831 -16.01662 -15.79065 -15.66180 -15.35022
-14.96719 -14.82495 -14.43840 -14.17605 -13.89863 -13.73081 -13.58349 -13.50602
-13.38846 -13.33831 -13.31747 -13.15973 -12.96490 -12.95131 -12.71238 -12.47703
-12.33487 -12.06498 -12.05852 -11.97054 -11.91145 -11.81482 -11.74037 -11.40336
-11.38433 -11.21354 -10.92423 -10.65537 -9.81070 -8.83307 -7.74443 -5.17176
-1.10317 1.28160 1.48409 1.49876 1.54332 1.56288 1.82582 2.36830
2.51158 2.75629 3.14505 3.35434 3.57320 3.69500 3.75343 3.84037
3.92563 3.99595 4.11812 4.20197 4.26369 4.32405 4.50862 4.56465
4.62116 4.68621 4.72052 4.79534 4.87136 4.88214 4.95547 4.97746
5.00728 5.14900 5.16213 5.27194 5.36351 5.36957 5.45347 5.50909
5.52804 5.73056 5.86294 6.20363 6.24716 6.35986 6.79452 7.15314
7.80671 8.43761 9.26061
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018299 B = 0.003336 C = 0.003180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1529.775129 B = 8390.935848 C = 8802.429702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.171 4.171
3 C -0.083 4.083
4 C -0.609 4.609
5 H 0.182 0.818
6 C 0.533 3.467
7 O -0.543 6.543
8 N -0.576 5.576
9 C 0.086 3.914
10 C -0.176 4.176
11 C 0.136 3.864
12 H 0.115 0.885
13 C -0.141 4.141
14 C 0.141 3.859
15 N -0.619 5.619
16 C -0.239 4.239
17 H 0.072 0.928
18 C -0.057 4.057
19 N -0.941 5.941
20 Si 0.973 3.027
21 H -0.283 1.283
22 H -0.292 1.292
23 H -0.281 1.281
24 C 0.122 3.878
25 S 2.633 3.367
26 N -1.236 6.236
27 O -0.959 6.959
28 O -0.987 6.987
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.060 0.940
32 H 0.078 0.922
33 H 0.094 0.906
34 H 0.097 0.903
35 H 0.092 0.908
36 H 0.080 0.920
37 H 0.078 0.922
38 H 0.078 0.922
39 H 0.078 0.922
40 H 0.067 0.933
41 H 0.090 0.910
42 H 0.075 0.925
43 H 0.069 0.931
44 H 0.032 0.968
45 H 0.247 0.753
46 H 0.034 0.966
47 H 0.020 0.980
48 H 0.426 0.574
49 H 0.429 0.571
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.568 -7.650 6.254 21.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.208 4.208
3 C -0.122 4.122
4 C -0.720 4.720
5 H 0.200 0.800
6 C 0.319 3.681
7 O -0.422 6.422
8 N -0.307 5.307
9 C -0.036 4.036
10 C -0.233 4.233
11 C 0.033 3.967
12 H 0.133 0.867
13 C -0.180 4.180
14 C 0.017 3.983
15 N -0.345 5.345
16 C -0.368 4.368
17 H 0.090 0.910
18 C -0.250 4.250
19 N -0.590 5.590
20 Si 0.802 3.198
21 H -0.209 1.209
22 H -0.218 1.218
23 H -0.207 1.207
24 C -0.004 4.004
25 S 2.722 3.278
26 N -0.916 5.916
27 O -0.948 6.948
28 O -0.976 6.976
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.079 0.921
32 H 0.096 0.904
33 H 0.112 0.888
34 H 0.116 0.884
35 H 0.110 0.890
36 H 0.098 0.902
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.097 0.903
40 H 0.086 0.914
41 H 0.108 0.892
42 H 0.093 0.907
43 H 0.087 0.913
44 H 0.049 0.951
45 H 0.057 0.943
46 H 0.052 0.948
47 H 0.038 0.962
48 H 0.256 0.744
49 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges -19.046 -8.081 6.381 21.651
hybrid contribution 1.166 0.767 -0.208 1.412
sum -17.880 -7.314 6.173 20.280
Atomic orbital electron populations
1.21709 0.93918 1.02513 1.02476 1.22263 0.98324 0.94873 1.05380
1.21386 0.84669 0.99671 1.06447 1.30675 1.10949 1.05265 1.25081
0.80048 1.19425 0.80416 0.89028 0.79212 1.90682 1.57109 1.46160
1.48254 1.47878 1.24091 1.08317 1.50372 1.21931 0.98226 0.88716
0.94730 1.22453 1.02063 1.03696 0.95111 1.22024 0.94369 0.82535
0.97805 0.86668 1.23285 0.98948 1.01277 0.94500 1.22143 0.87677
0.98271 0.90227 1.44709 1.01371 1.85026 1.03420 1.19307 0.81803
1.41754 0.93904 0.90962 1.25453 1.01869 1.02483 0.95233 1.70003
1.33983 1.57075 0.97937 0.85231 0.80424 0.77884 0.76222 1.20921
1.21776 1.20728 1.21751 0.89406 0.98207 0.91055 1.04155 0.73578
0.74186 0.75837 1.52753 1.70576 1.46532 1.21766 1.93550 1.77019
1.40948 1.83249 1.93645 1.32545 1.86378 1.85055 0.92039 0.91869
0.92115 0.90366 0.88810 0.88442 0.88977 0.90203 0.90347 0.90343
0.90338 0.91403 0.89196 0.90673 0.91283 0.95072 0.94317 0.94784
0.96188 0.74408 0.73914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16
2 C -0.17 -2.46 5.65 30.60 0.17 -2.29 16
3 C -0.08 -1.26 4.21 30.60 0.13 -1.13 16
4 C -0.61 -11.97 1.92 29.85 0.06 -11.91 16
5 H 0.18 2.84 5.52 -2.39 -0.01 2.83 16
6 C 0.53 14.03 6.43 87.66 0.56 14.60 16
7 O -0.54 -15.45 14.87 -3.02 -0.04 -15.49 16
8 N -0.58 -17.48 2.45 -791.28 -1.94 -19.41 16
9 C 0.09 2.63 4.79 86.38 0.41 3.04 16
10 C -0.18 -4.37 8.88 71.98 0.64 -3.73 16
11 C 0.14 4.69 3.58 46.18 0.17 4.85 16
12 H 0.12 3.73 6.99 -2.39 -0.02 3.71 16
13 C -0.14 -4.93 6.09 31.98 0.19 -4.74 16
14 C 0.14 6.37 4.64 86.85 0.40 6.77 16
15 N -0.62 -30.81 2.97 -691.99 -2.05 -32.87 16
16 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16
17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16
18 C -0.06 -3.17 5.49 84.86 0.47 -2.70 16
19 N -0.94 -53.55 10.09 21.65 0.22 -53.33 16
20 Si 0.97 45.29 29.55 68.60 2.03 47.32 16
21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
24 C 0.12 5.16 6.24 86.73 0.54 5.70 16
25 S 2.63 59.97 5.38 -56.49 -0.30 59.67 16
26 N -1.24 -21.88 9.13 37.02 0.34 -21.54 16
27 O -0.96 -23.43 14.89 -127.65 -1.90 -25.33 16
28 O -0.99 -31.41 17.34 -127.65 -2.21 -33.62 16
29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
33 H 0.09 1.64 4.90 -2.39 -0.01 1.63 16
34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
35 H 0.09 1.25 6.96 -2.39 -0.02 1.23 16
36 H 0.08 3.16 5.19 -2.39 -0.01 3.14 16
37 H 0.08 2.06 5.68 -2.39 -0.01 2.05 16
38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16
39 H 0.08 1.46 7.45 -2.39 -0.02 1.44 16
40 H 0.07 1.92 4.33 -2.39 -0.01 1.91 16
41 H 0.09 2.71 6.46 -2.38 -0.02 2.70 16
42 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16
43 H 0.07 3.66 5.87 -2.39 -0.01 3.64 16
44 H 0.03 1.41 4.03 -2.39 -0.01 1.40 16
45 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16
46 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
47 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16
48 H 0.43 6.67 6.95 -96.74 -0.67 6.00 16
49 H 0.43 6.03 8.96 -96.75 -0.87 5.16 16
Total: -1.00 -70.89 374.73 -1.09 -71.98
By element:
Atomic # 1 Polarization: 28.14 SS G_CDS: -0.54 Total: 27.60 kcal
Atomic # 6 Polarization: -10.29 SS G_CDS: 5.32 Total: -4.97 kcal
Atomic # 7 Polarization: -123.71 SS G_CDS: -3.44 Total: -127.15 kcal
Atomic # 8 Polarization: -70.28 SS G_CDS: -4.16 Total: -74.44 kcal
Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal
Atomic # 16 Polarization: 59.97 SS G_CDS: -0.30 Total: 59.67 kcal
Total: -70.89 -1.09 -71.98 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001494905096.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.421 kcal
(2) G-P(sol) polarization free energy of solvation -70.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds