Wall clock time and date at job start Wed Apr 1 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47704 * 2 1 4 4 C 1.52992 * 109.47731 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46733 * 305.00238 * 4 3 2 6 6 C 1.50701 * 109.47343 * 185.00193 * 4 3 2 7 7 O 1.21278 * 119.99646 * 329.99531 * 6 4 3 8 8 N 1.34778 * 120.00061 * 149.99988 * 6 4 3 9 9 C 1.46497 * 119.99971 * 174.74607 * 8 6 4 10 10 C 1.53000 * 110.43260 * 302.26269 * 9 8 6 11 11 N 1.46493 * 109.47303 * 306.07855 * 10 9 8 12 12 C 1.36940 * 120.00450 * 174.99746 * 11 10 9 13 13 H 1.07997 * 119.99455 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.00158 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00340 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99600 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47136 * 90.00251 * 16 14 12 18 18 H 1.48506 * 109.46749 * 209.99905 * 16 14 12 19 19 H 1.48495 * 109.47365 * 329.99729 * 16 14 12 20 20 C 1.54889 * 110.48765 * 179.57614 * 9 8 6 21 21 C 1.54888 * 102.74762 * 279.26727 * 20 9 8 22 22 C 1.54271 * 104.19771 * 322.05578 * 21 20 9 23 23 C 1.53879 * 106.59543 * 23.61081 * 22 21 20 24 24 S 1.81401 * 109.47110 * 64.99866 * 4 3 2 25 25 N 1.65597 * 104.45179 * 60.00342 * 24 4 3 26 26 O 1.42099 * 110.54152 * 171.62975 * 24 4 3 27 27 O 1.42105 * 110.54273 * 308.37522 * 24 4 3 28 28 H 1.09002 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46469 * 299.99976 * 1 2 3 30 30 H 1.08994 * 109.47246 * 59.99579 * 1 2 3 31 31 H 1.08998 * 109.47155 * 240.00174 * 2 1 3 32 32 H 1.09003 * 109.47333 * 120.00209 * 2 1 3 33 33 H 1.08998 * 109.46673 * 59.99879 * 3 2 1 34 34 H 1.09003 * 109.46896 * 300.00477 * 3 2 1 35 35 H 0.96997 * 119.99598 * 355.02227 * 8 6 4 36 36 H 1.08997 * 109.47365 * 66.08712 * 10 9 8 37 37 H 1.09010 * 109.46615 * 186.08123 * 10 9 8 38 38 H 0.97007 * 120.00037 * 354.99990 * 11 10 9 39 39 H 0.96996 * 119.99913 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.75226 * 37.57981 * 20 9 8 41 41 H 1.08995 * 110.75435 * 160.94948 * 20 9 8 42 42 H 1.09003 * 110.48505 * 203.38234 * 21 20 9 43 43 H 1.08998 * 110.48932 * 80.73597 * 21 20 9 44 44 H 1.09003 * 110.02933 * 264.33027 * 22 21 20 45 45 H 1.08992 * 110.03152 * 142.89665 * 22 21 20 46 46 H 1.09001 * 110.03200 * 240.71415 * 23 22 21 47 47 H 1.09001 * 110.03063 * 119.28619 * 23 22 21 48 48 H 0.97004 * 119.99723 * 359.97438 * 25 24 4 49 49 H 0.96994 * 120.00645 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0725 2.8578 0.1232 7 8 3.4169 3.7752 -0.3233 8 7 5.2504 3.1041 0.7302 9 6 5.7942 4.4643 0.7495 10 6 5.9660 4.9912 -0.6766 11 7 6.7690 4.0439 -1.4537 12 6 6.9701 4.2532 -2.7920 13 1 6.5362 5.1165 -3.2746 14 6 7.7305 3.3553 -3.5284 15 7 8.2589 2.3030 -2.9403 16 14 8.0041 3.6406 -5.3541 17 1 9.2295 4.4562 -5.5496 18 1 8.1646 2.3336 -6.0407 19 1 6.8355 4.3586 -5.9235 20 6 7.1435 4.4979 1.5093 21 6 6.6996 4.5377 2.9926 22 6 5.4535 5.4472 2.9905 23 6 4.8778 5.4005 1.5642 24 16 4.1741 0.7199 -1.5510 25 7 3.5555 1.7011 -2.7329 26 8 5.5814 0.8822 -1.6618 27 8 3.5613 -0.5406 -1.7857 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.7400 2.3800 1.1507 36 1 4.9871 5.1053 -1.1422 37 1 6.4700 5.9574 -0.6486 38 1 7.1584 3.2683 -1.0203 39 1 8.7906 1.6759 -3.4549 40 1 7.7248 3.5991 1.3040 41 1 7.7097 5.3928 1.2514 42 1 7.4847 4.9680 3.6144 43 1 6.4413 3.5375 3.3405 44 1 5.7362 6.4685 3.2458 45 1 4.7176 5.0739 3.7026 46 1 4.8811 6.3991 1.1274 47 1 3.8624 5.0046 1.5842 48 1 3.0042 2.4621 -2.4921 49 1 3.7436 1.5145 -3.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495177274.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:44 Heat of formation + Delta-G solvation = -102.625474 kcal Electronic energy + Delta-G solvation = -31913.108356 eV Core-core repulsion = 27809.422259 eV Total energy + Delta-G solvation = -4103.686098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.30420 -37.94048 -36.89440 -35.46569 -35.31321 -34.18261 -33.20651 -32.59062 -31.22510 -30.44382 -28.65083 -28.02737 -25.06085 -24.30970 -22.08251 -21.49583 -21.14807 -20.31629 -19.11063 -19.06131 -17.79118 -17.51251 -16.90492 -16.36767 -15.95654 -15.56366 -15.37801 -15.03014 -14.58269 -14.41189 -14.27468 -13.92348 -13.82156 -13.68810 -13.10774 -12.96446 -12.77266 -12.51329 -12.39904 -12.05575 -11.90111 -11.77669 -11.55660 -11.42957 -11.35222 -11.26873 -11.12569 -11.07080 -10.91770 -10.76087 -10.72551 -10.61499 -10.42859 -10.33526 -10.11458 -9.91246 -9.84065 -9.56708 -9.45927 -8.66322 -8.62540 -6.64098 -5.48227 -2.76379 0.43748 2.78557 3.08692 3.32727 3.53453 3.59315 3.60512 3.92647 4.13452 4.43922 4.64340 4.78835 4.78989 4.84694 4.97600 5.00425 5.05778 5.23859 5.39694 5.51606 5.53742 5.59547 5.65272 5.70051 5.74484 5.75503 5.83518 5.90749 5.94051 5.96824 6.00111 6.10928 6.20458 6.30241 6.35349 6.36243 6.43342 6.51149 6.56717 6.62948 6.88849 7.07987 7.55170 7.70646 7.91693 8.35850 8.66050 9.78620 10.37420 10.73572 11.71514 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.006333 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.517391 B = 4420.375230 C = 6968.728391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C -0.083 4.083 4 C -0.627 4.627 5 H 0.151 0.849 6 C 0.546 3.454 7 O -0.519 6.519 8 N -0.693 5.693 9 C 0.168 3.832 10 C 0.144 3.856 11 N -0.720 5.720 12 C -0.240 4.240 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.905 5.905 16 Si 0.890 3.110 17 H -0.294 1.294 18 H -0.294 1.294 19 H -0.285 1.285 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.124 4.124 24 S 2.614 3.386 25 N -1.236 6.236 26 O -0.885 6.885 27 O -0.966 6.966 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.387 0.613 39 H 0.249 0.751 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.414 0.586 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -1.252 12.668 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.208 4.208 3 C -0.121 4.121 4 C -0.734 4.734 5 H 0.169 0.831 6 C 0.329 3.671 7 O -0.395 6.395 8 N -0.342 5.342 9 C 0.082 3.918 10 C 0.016 3.984 11 N -0.365 5.365 12 C -0.372 4.372 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.552 5.552 16 Si 0.722 3.278 17 H -0.222 1.222 18 H -0.221 1.221 19 H -0.211 1.211 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.163 4.163 24 S 2.699 3.301 25 N -0.912 5.912 26 O -0.873 6.873 27 O -0.955 6.955 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.222 0.778 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.241 0.759 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.435 -1.412 12.235 16.806 hybrid contribution 0.100 0.186 -0.533 0.573 sum -11.335 -1.226 11.702 16.338 Atomic orbital electron populations 1.21686 0.95177 1.01787 1.01750 1.22264 0.97148 0.95822 1.05522 1.21211 0.87267 0.98526 1.05121 1.30761 1.08992 1.07269 1.26419 0.83127 1.18844 0.81635 0.87805 0.78832 1.90680 1.56514 1.44526 1.47776 1.45778 1.21186 1.10985 1.56297 1.21481 0.92515 0.80809 0.96972 1.21043 0.96118 0.93056 0.88224 1.42159 1.60386 1.27442 1.06517 1.18995 1.26462 1.06388 0.85347 0.92006 1.24621 1.01107 0.97352 0.96872 1.69673 1.37900 1.13370 1.34208 0.86478 0.77734 0.76565 0.87053 1.22150 1.22060 1.21103 1.22739 0.95818 1.03859 0.93319 1.22419 0.97359 0.99549 0.97063 1.22141 0.97139 0.99687 0.97071 1.22457 0.99734 0.99950 0.94169 1.05205 0.75390 0.74073 0.75428 1.52823 1.70866 1.45908 1.21614 1.93910 1.26508 1.84514 1.82410 1.93504 1.78229 1.40596 1.83193 0.92450 0.93012 0.92476 0.87315 0.91612 0.90024 0.89915 0.76754 0.94042 0.96346 0.77833 0.94052 0.90334 0.89559 0.91709 0.92009 0.92011 0.92460 0.90867 0.90802 0.75880 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.17 -1.84 5.65 -26.73 -0.15 -1.99 16 3 C -0.08 -0.94 4.15 -26.73 -0.11 -1.05 16 4 C -0.63 -8.05 2.75 -27.89 -0.08 -8.13 16 5 H 0.15 1.44 8.14 -51.92 -0.42 1.02 16 6 C 0.55 8.37 5.84 -10.98 -0.06 8.31 16 7 O -0.52 -8.94 12.59 5.56 0.07 -8.87 16 8 N -0.69 -10.32 4.62 -46.07 -0.21 -10.53 16 9 C 0.17 2.63 0.39 -130.16 -0.05 2.58 16 10 C 0.14 2.94 4.76 -4.05 -0.02 2.92 16 11 N -0.72 -17.68 5.30 -59.91 -0.32 -17.99 16 12 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 13 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 14 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 15 N -0.90 -27.29 13.06 55.49 0.72 -26.57 16 16 Si 0.89 22.77 29.55 -169.99 -5.02 17.75 16 17 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 18 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.12 -1.68 5.58 -24.74 -0.14 -1.82 16 21 C -0.13 -1.39 6.79 -25.07 -0.17 -1.56 16 22 C -0.12 -1.35 6.80 -25.61 -0.17 -1.53 16 23 C -0.12 -1.69 5.67 -25.61 -0.15 -1.84 16 24 S 2.61 42.55 5.46 -107.50 -0.59 41.97 16 25 N -1.24 -19.32 9.13 60.35 0.55 -18.77 16 26 O -0.88 -19.01 18.01 -57.54 -1.04 -20.05 16 27 O -0.97 -16.52 14.89 -57.54 -0.86 -17.37 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.39 4.90 -51.93 -0.25 1.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.94 6.96 -51.93 -0.36 0.58 16 35 H 0.40 5.19 8.49 -40.82 -0.35 4.84 16 36 H 0.04 0.92 6.46 -51.93 -0.34 0.58 16 37 H 0.02 0.39 8.06 -51.92 -0.42 -0.03 16 38 H 0.39 9.95 7.27 -40.82 -0.30 9.65 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 47 H 0.07 1.07 6.57 -51.93 -0.34 0.73 16 48 H 0.41 5.97 7.18 -34.47 -0.25 5.73 16 49 H 0.42 6.35 8.96 -34.47 -0.31 6.05 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -35.54 394.06 -9.66 -45.19 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -7.93 Total: 21.42 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.98 Total: -12.10 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: 0.75 Total: -73.86 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.82 Total: -46.30 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 42.55 SS G_CDS: -0.59 Total: 41.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.54 -9.66 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495177274.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.434 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds