Wall clock time and date at job start Wed Apr 1 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47164 * 59.99836 * 4 2 1 7 7 N 1.46495 * 109.46909 * 175.00315 * 6 4 2 8 8 C 1.34780 * 119.99828 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00130 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00031 * 179.97438 * 8 7 6 11 11 N 1.46492 * 109.47299 * 179.97438 * 10 8 7 12 12 C 1.47028 * 120.99772 * 84.99776 * 11 10 8 13 13 C 1.52751 * 109.48670 * 122.53140 * 12 11 10 14 14 C 1.52680 * 110.66564 * 64.32177 * 13 12 11 15 15 C 1.53288 * 109.76828 * 289.71590 * 14 13 12 16 16 S 1.66402 * 120.99717 * 264.72107 * 11 10 8 17 17 O 1.42103 * 104.53348 * 344.38709 * 16 11 10 18 18 O 1.42094 * 104.53855 * 112.78726 * 16 11 10 19 19 N 1.46504 * 109.46883 * 180.02562 * 4 2 1 20 20 C 1.36932 * 120.00287 * 85.00233 * 19 4 2 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 4 23 23 N 1.31621 * 120.00433 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99716 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47252 * 90.00578 * 24 22 20 26 26 H 1.48506 * 109.47167 * 210.00316 * 24 22 20 27 27 H 1.48500 * 109.47265 * 330.00361 * 24 22 20 28 28 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 30 30 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 34 34 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 35 35 H 1.09001 * 109.47096 * 295.00066 * 6 4 2 36 36 H 1.08994 * 109.47065 * 55.00225 * 6 4 2 37 37 H 0.97000 * 120.00271 * 359.97438 * 7 6 4 38 38 H 1.09001 * 109.46945 * 299.99663 * 10 8 7 39 39 H 1.09004 * 109.47023 * 59.99278 * 10 8 7 40 40 H 1.09000 * 109.46976 * 242.54222 * 12 11 10 41 41 H 1.08998 * 109.46442 * 2.53343 * 12 11 10 42 42 H 1.09008 * 109.23660 * 184.62424 * 13 12 11 43 43 H 1.09000 * 109.24020 * 304.00961 * 13 12 11 44 44 H 1.08996 * 109.42449 * 49.80905 * 14 13 12 45 45 H 1.09000 * 109.42260 * 169.62590 * 14 13 12 46 46 H 1.09005 * 109.67926 * 181.48756 * 15 14 13 47 47 H 1.08998 * 109.67853 * 301.99619 * 15 14 13 48 48 H 0.97003 * 119.99624 * 264.99510 * 19 4 2 49 49 H 0.96993 * 120.00175 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2493 7 7 2.1141 -2.8882 2.3807 8 6 1.8059 -4.1847 2.5822 9 8 1.0448 -4.7515 1.8271 10 6 2.4072 -4.9301 3.7458 11 7 1.9188 -6.3113 3.7459 12 6 2.5763 -7.3469 2.9354 13 6 3.0310 -8.4901 3.8407 14 6 1.8295 -9.1808 4.4813 15 6 1.1887 -8.2509 5.5178 16 16 0.6076 -6.7564 4.6685 17 8 0.4404 -5.6875 5.5898 18 8 -0.4018 -7.0788 3.7218 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3541 1.7510 21 1 3.6489 1.2018 2.1460 22 6 5.5774 0.3544 1.7518 23 7 6.2351 1.3878 2.2333 24 14 6.5119 -1.1118 1.0692 25 1 6.7603 -0.9092 -0.3809 26 1 7.8092 -1.2463 1.7795 27 1 5.7095 -2.3457 1.2664 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 0.4437 -2.1650 1.3388 36 1 1.8183 -2.6511 0.3180 37 1 2.7232 -2.4350 2.9845 38 1 3.4936 -4.9286 3.6559 39 1 2.1190 -4.4430 4.6773 40 1 1.8742 -7.7280 2.1938 41 1 3.4413 -6.9178 2.4299 42 1 3.5895 -9.2160 3.2496 43 1 3.6767 -8.0929 4.6240 44 1 1.0977 -9.4237 3.7108 45 1 2.1570 -10.0980 4.9707 46 1 0.3472 -8.7552 5.9930 47 1 1.9267 -7.9782 6.2722 48 1 3.9903 -1.4819 0.8945 49 1 7.2050 1.3878 2.2342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496582959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:44 Heat of formation + Delta-G solvation = -125.253180 kcal Electronic energy + Delta-G solvation = -30045.185616 eV Core-core repulsion = 25940.518307 eV Total energy + Delta-G solvation = -4104.667309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.85187 -39.00247 -38.46375 -37.92955 -37.02365 -35.29996 -35.00961 -34.92817 -32.70626 -30.85053 -29.76843 -27.91988 -27.50953 -25.48024 -24.90480 -23.26938 -22.21652 -21.66975 -20.96757 -19.91031 -19.44556 -18.53357 -18.11043 -17.88146 -17.12925 -17.03227 -16.65231 -16.31177 -16.07566 -15.83199 -15.38313 -15.06385 -14.97035 -14.81679 -14.75273 -14.66703 -14.35764 -14.27701 -13.62608 -13.47774 -13.31868 -13.21368 -13.14191 -12.95197 -12.93834 -12.86542 -12.70673 -12.54498 -12.49318 -12.22981 -11.97119 -11.93506 -11.89643 -11.76517 -11.49632 -11.37543 -11.33133 -11.17397 -10.86106 -10.03110 -9.92535 -9.25742 -7.92155 -5.25210 -0.79002 1.41570 1.45783 1.48121 1.52222 1.62473 2.28809 2.55260 2.78658 3.18505 3.38761 3.42639 3.56516 3.74910 3.76272 3.83492 3.88738 4.08637 4.20231 4.24335 4.26973 4.36859 4.42273 4.43879 4.55333 4.60023 4.64206 4.73253 4.86363 4.89788 4.94113 4.96430 5.01751 5.05227 5.14058 5.15045 5.23230 5.30536 5.34264 5.49482 5.53020 5.61036 5.75368 5.89490 6.29641 6.58770 7.15440 7.24802 7.88878 8.09364 9.28871 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.003097 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.913658 B = 9038.767242 C =10312.951838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.133 4.133 4 C 0.177 3.823 5 H 0.056 0.944 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.477 3.523 9 O -0.573 6.573 10 C 0.105 3.895 11 N -0.979 5.979 12 C 0.108 3.892 13 C -0.150 4.150 14 C -0.116 4.116 15 C -0.586 4.586 16 S 2.584 3.416 17 O -0.997 6.997 18 O -0.997 6.997 19 N -0.744 5.744 20 C -0.205 4.205 21 H 0.065 0.935 22 C -0.060 4.060 23 N -0.984 5.984 24 Si 0.944 3.056 25 H -0.293 1.293 26 H -0.302 1.302 27 H -0.247 1.247 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.413 0.587 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.156 0.844 47 H 0.165 0.835 48 H 0.364 0.636 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -23.397 5.677 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.074 0.926 6 C -0.006 4.006 7 N -0.369 5.369 8 C 0.262 3.738 9 O -0.453 6.453 10 C -0.024 4.024 11 N -0.816 5.816 12 C -0.016 4.016 13 C -0.189 4.189 14 C -0.154 4.154 15 C -0.721 4.721 16 S 2.684 3.316 17 O -0.988 6.988 18 O -0.987 6.987 19 N -0.387 5.387 20 C -0.336 4.336 21 H 0.083 0.917 22 C -0.251 4.251 23 N -0.635 5.635 24 Si 0.774 3.226 25 H -0.220 1.220 26 H -0.229 1.229 27 H -0.171 1.171 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.250 0.750 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.174 0.826 47 H 0.183 0.817 48 H 0.197 0.803 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.577 -23.116 5.274 25.214 hybrid contribution 1.474 -0.153 -0.266 1.505 sum -7.104 -23.269 5.008 24.839 Atomic orbital electron populations 1.21858 0.94115 1.01897 1.02122 1.21604 0.95857 0.96569 0.98585 1.21716 1.01659 0.95706 0.99975 1.20635 0.82929 0.92539 0.97064 0.92579 1.21630 0.98115 0.91757 0.89080 1.46061 1.48817 1.11164 1.30866 1.22072 0.81625 0.82268 0.87806 1.90706 1.37399 1.68454 1.48700 1.21343 1.02573 0.81399 0.97105 1.57032 1.50449 1.13597 1.60556 1.21733 0.98680 0.87539 0.93683 1.22137 0.98463 0.97426 1.00840 1.21476 0.97914 0.99448 0.96559 1.30285 1.13877 1.16108 1.11810 1.05605 0.73692 0.77601 0.74694 1.93528 1.85591 1.54316 1.65341 1.93562 1.57646 1.86044 1.61432 1.42760 1.01760 1.19430 1.74718 1.18916 0.89085 0.95759 1.29854 0.91685 1.25317 0.97307 0.99848 1.02653 1.69863 1.06895 1.32391 1.54361 0.85571 0.78265 0.81435 0.77367 1.22029 1.22908 1.17112 0.92667 0.91919 0.92207 0.91998 0.93213 0.92988 0.94313 0.90616 0.92281 0.74999 0.83805 0.85337 0.92175 0.88430 0.86821 0.88611 0.90636 0.86364 0.82602 0.81749 0.80258 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.84 71.98 0.64 -3.05 16 2 C -0.10 -3.34 2.69 -10.79 -0.03 -3.37 16 3 C -0.13 -4.77 8.26 71.98 0.59 -4.18 16 4 C 0.18 6.07 2.18 44.99 0.10 6.17 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.02 16 6 C 0.12 3.73 4.73 86.38 0.41 4.14 16 7 N -0.72 -21.52 5.39 -463.07 -2.50 -24.02 16 8 C 0.48 14.54 7.90 87.66 0.69 15.23 16 9 O -0.57 -21.83 16.43 -3.02 -0.05 -21.88 16 10 C 0.11 2.28 6.14 85.64 0.53 2.80 16 11 N -0.98 -19.98 2.47 -519.04 -1.28 -21.26 16 12 C 0.11 1.63 6.36 86.20 0.55 2.18 16 13 C -0.15 -1.01 5.80 30.41 0.18 -0.84 16 14 C -0.12 -0.79 5.79 30.58 0.18 -0.61 16 15 C -0.59 -5.14 6.56 72.08 0.47 -4.67 16 16 S 2.58 57.09 5.71 -56.49 -0.32 56.77 16 17 O -1.00 -28.05 16.50 -127.69 -2.11 -30.15 16 18 O -1.00 -31.70 18.10 -127.69 -2.31 -34.01 16 19 N -0.74 -30.54 4.24 -322.93 -1.37 -31.91 16 20 C -0.21 -10.42 8.05 84.03 0.68 -9.75 16 21 H 0.07 3.67 7.62 -2.91 -0.02 3.64 16 22 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 23 N -0.98 -59.84 13.97 21.65 0.30 -59.54 16 24 Si 0.94 42.58 27.73 68.60 1.90 44.48 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.25 -9.69 6.52 99.48 0.65 -9.04 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.47 6.54 -2.39 -0.02 1.45 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.17 6.01 -2.39 -0.01 2.15 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 2.32 6.71 -2.39 -0.02 2.31 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.41 11.90 8.14 -92.71 -0.75 11.14 16 38 H 0.14 2.13 8.07 -2.39 -0.02 2.11 16 39 H 0.13 2.65 6.87 -2.39 -0.02 2.63 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.31 7.92 -2.39 -0.02 1.29 16 42 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.10 0.40 8.11 -2.39 -0.02 0.38 16 44 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 45 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.36 14.75 5.66 -92.71 -0.52 14.22 16 49 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -81.86 395.81 -2.67 -84.54 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.38 Total: 35.74 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.44 Total: 1.25 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -4.85 Total: -136.72 kcal Atomic # 8 Polarization: -81.58 SS G_CDS: -4.47 Total: -86.05 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.48 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.32 Total: 56.77 kcal Total: -81.86 -2.67 -84.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496582959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.717 kcal (2) G-P(sol) polarization free energy of solvation -81.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds