Wall clock time and date at job start Wed Apr 1 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46925 * 2 1 4 4 H 1.08993 * 109.49927 * 304.93291 * 3 2 1 5 5 C 1.53197 * 109.49933 * 64.99844 * 3 2 1 6 6 N 1.46923 * 108.77632 * 174.58235 * 5 3 2 7 7 C 1.34775 * 120.62874 * 126.36687 * 6 5 3 8 8 O 1.21287 * 120.00263 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00269 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47008 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46937 * 180.02562 * 11 10 9 13 13 N 1.65608 * 104.44741 * 179.97438 * 12 11 10 14 14 O 1.42095 * 110.54513 * 68.37365 * 12 11 10 15 15 O 1.42102 * 110.54191 * 291.62209 * 12 11 10 16 16 C 1.46919 * 118.74146 * 306.64449 * 6 5 3 17 17 C 1.52763 * 109.00681 * 53.30930 * 16 6 5 18 18 C 1.53038 * 109.38172 * 305.58648 * 17 16 6 19 19 H 1.09003 * 109.44600 * 181.25567 * 18 17 16 20 20 N 1.46503 * 109.46090 * 301.21713 * 18 17 16 21 21 C 1.36928 * 120.00142 * 275.06788 * 20 18 17 22 22 H 1.08002 * 120.00522 * 0.02562 * 21 20 18 23 23 C 1.38819 * 119.99862 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99821 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99995 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46895 * 359.97438 * 25 23 21 27 27 H 1.48489 * 109.47141 * 119.99814 * 25 23 21 28 28 H 1.48505 * 109.46438 * 239.99827 * 25 23 21 29 29 H 1.09004 * 109.46922 * 60.00073 * 1 2 3 30 30 H 1.09002 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47129 * 300.00292 * 1 2 3 32 32 H 1.08997 * 109.47129 * 239.99708 * 2 1 3 33 33 H 1.09004 * 109.46922 * 119.99927 * 2 1 3 34 34 H 1.09001 * 109.58446 * 54.79596 * 5 3 2 35 35 H 1.08998 * 109.70063 * 294.44671 * 5 3 2 36 36 H 1.09004 * 109.46534 * 60.00666 * 9 7 6 37 37 H 1.08996 * 109.47069 * 300.00581 * 9 7 6 38 38 H 1.09008 * 109.46625 * 60.00287 * 10 9 7 39 39 H 1.09000 * 109.47210 * 300.00728 * 10 9 7 40 40 H 1.09000 * 109.47698 * 60.00135 * 11 10 9 41 41 H 1.09000 * 109.47377 * 300.00194 * 11 10 9 42 42 H 0.96998 * 119.99920 * 149.99961 * 13 12 11 43 43 H 0.96993 * 120.00416 * 329.99864 * 13 12 11 44 44 H 1.09000 * 109.58939 * 173.14326 * 16 6 5 45 45 H 1.08996 * 109.59352 * 293.57008 * 16 6 5 46 46 H 1.09002 * 109.56364 * 185.55175 * 17 16 6 47 47 H 1.09000 * 109.38696 * 65.51548 * 17 16 6 48 48 H 0.96998 * 119.99390 * 95.06867 * 20 18 17 49 49 H 0.97000 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6350 2.1281 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5580 1.5628 8 8 0.2849 4.4423 1.7240 9 6 2.1184 5.9233 1.6022 10 6 1.0427 6.9807 1.8582 11 6 1.6893 8.3667 1.8976 12 16 0.4140 9.6205 2.2018 13 7 1.2412 11.0551 2.2205 14 8 -0.1023 9.4970 3.5198 15 8 -0.4541 9.7305 1.0822 16 6 3.6912 3.5904 1.1468 17 6 4.0740 2.8880 -0.1547 18 6 3.5655 1.4450 -0.1215 19 1 3.8574 0.9362 -1.0403 20 7 4.1480 0.7485 1.0282 21 6 5.3860 0.1727 0.9247 22 1 5.9334 0.2323 -0.0045 23 6 5.9377 -0.4876 2.0140 24 7 5.2709 -0.5598 3.1464 25 14 7.6270 -1.2725 1.8730 26 1 8.1628 -1.0516 0.5057 27 1 8.5422 -0.6597 2.8688 28 1 7.5183 -2.7308 2.1320 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9906 1.5398 2.1547 35 1 0.5497 2.2172 1.3563 36 1 2.6062 6.1242 0.6484 37 1 2.8576 5.9563 2.4025 38 1 0.5552 6.7795 2.8122 39 1 0.3031 6.9478 1.0582 40 1 2.1766 8.5677 0.9435 41 1 2.4291 8.4000 2.6974 42 1 0.8020 11.8718 1.9360 43 1 2.1647 11.0787 2.5160 44 1 3.9622 4.6444 1.0849 45 1 4.2181 3.1239 1.9791 46 1 5.1584 2.8892 -0.2649 47 1 3.6223 3.4137 -0.9960 48 1 3.6566 0.6953 1.8628 49 1 5.6565 -1.0209 3.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498893368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:57 Heat of formation + Delta-G solvation = -114.896876 kcal Electronic energy + Delta-G solvation = -29451.871164 eV Core-core repulsion = 25347.652939 eV Total energy + Delta-G solvation = -4104.218226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.17602 -38.02043 -37.32439 -36.23586 -34.95073 -34.47192 -33.76724 -33.59125 -31.74409 -29.68585 -29.26891 -28.00304 -25.02687 -23.87662 -23.52789 -22.52958 -20.83120 -19.78067 -19.55684 -18.35745 -17.87826 -17.63888 -17.41588 -16.88750 -16.56644 -16.03463 -15.70809 -15.36658 -14.85518 -14.52810 -14.34451 -14.04155 -13.68783 -13.41249 -13.34927 -13.24658 -12.96564 -12.58661 -12.49446 -12.45145 -12.37114 -12.28523 -12.26232 -12.19395 -11.70991 -11.42956 -11.23889 -11.15210 -11.11348 -11.00556 -10.85310 -10.80351 -10.68079 -10.33442 -10.28531 -10.17731 -9.82375 -9.60209 -9.56577 -8.97607 -8.26404 -7.02583 -5.83993 -3.12501 -0.11987 2.51069 2.77349 3.16450 3.37014 3.37362 3.43440 3.45554 3.90671 4.09926 4.49883 4.52778 4.59344 4.77562 4.95837 5.08422 5.11457 5.25330 5.29616 5.31921 5.47617 5.52169 5.54553 5.55259 5.62390 5.68297 5.76607 5.77244 5.80719 5.89500 6.05900 6.12991 6.16341 6.32477 6.35032 6.38553 6.54132 6.59083 6.61308 6.67107 6.73549 6.90544 6.97795 7.64240 7.67718 8.33915 8.34425 9.46262 10.02889 10.37971 11.38380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002336 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.388761 B =11981.961679 C =13120.986593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.117 3.883 6 N -0.600 5.600 7 C 0.509 3.491 8 O -0.553 6.553 9 C -0.132 4.132 10 C -0.097 4.097 11 C -0.623 4.623 12 S 2.615 3.385 13 N -1.253 6.253 14 O -0.959 6.959 15 O -0.962 6.962 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.718 5.718 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.419 0.581 43 H 0.413 0.587 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 19.254 -4.817 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.005 4.005 6 N -0.332 5.332 7 C 0.297 3.703 8 O -0.432 6.432 9 C -0.173 4.173 10 C -0.137 4.137 11 C -0.753 4.753 12 S 2.707 3.293 13 N -0.925 5.925 14 O -0.948 6.948 15 O -0.951 6.951 16 C -0.010 4.010 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.249 0.751 43 H 0.239 0.761 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.400 18.837 -4.647 20.430 hybrid contribution 2.099 -0.287 0.110 2.121 sum -4.301 18.549 -4.537 19.574 Atomic orbital electron populations 1.21855 0.96787 1.01054 1.01372 1.21418 0.94305 0.95729 1.03353 1.21742 0.97312 0.96173 0.97045 0.91619 1.21697 0.98837 0.81647 0.98290 1.48141 1.08714 1.06637 1.69712 1.20497 0.86956 0.86168 0.76656 1.90680 1.14918 1.86763 1.50863 1.21619 0.99107 0.91905 1.04638 1.21059 0.98161 0.89161 1.05291 1.30500 1.18535 1.13810 1.12462 1.04738 0.75153 0.74639 0.74805 1.53262 1.27134 1.26594 1.85511 1.93635 1.76365 1.85593 1.39221 1.93616 1.62657 1.85104 1.53743 1.21667 0.79220 0.99977 1.00168 1.22453 1.01807 0.99403 0.95501 1.20219 0.89786 0.90615 0.92617 0.93139 1.42484 1.19022 1.64010 1.10574 1.19252 0.93522 1.26971 0.97088 0.91226 1.24708 0.98552 1.01472 0.96049 1.69655 1.38000 1.48056 1.02264 0.86175 0.84254 0.78969 0.77095 1.20658 1.22003 1.21966 0.93379 0.93151 0.92771 0.92048 0.90496 0.90761 0.89546 0.88480 0.88386 0.89247 0.89308 0.84427 0.84627 0.75103 0.76145 0.91234 0.89634 0.90706 0.93353 0.78088 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.93 5.03 -3.71 -0.02 1.91 16 6 N -0.60 -9.11 2.98 -173.03 -0.52 -9.62 16 7 C 0.51 7.49 7.70 -10.98 -0.08 7.40 16 8 O -0.55 -9.90 15.39 5.55 0.09 -9.82 16 9 C -0.13 -1.31 4.05 -27.88 -0.11 -1.42 16 10 C -0.10 -0.92 4.51 -26.74 -0.12 -1.04 16 11 C -0.62 -3.33 6.17 37.15 0.23 -3.10 16 12 S 2.62 19.84 5.97 -107.50 -0.64 19.20 16 13 N -1.25 -4.78 9.36 60.35 0.57 -4.22 16 14 O -0.96 -11.44 18.10 -57.54 -1.04 -12.48 16 15 O -0.96 -11.10 18.10 -57.54 -1.04 -12.15 16 16 C 0.11 1.61 6.06 -3.94 -0.02 1.59 16 17 C -0.15 -2.30 5.76 -26.83 -0.15 -2.45 16 18 C 0.18 3.16 2.53 -67.89 -0.17 2.99 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -15.88 3.72 -53.38 -0.20 -16.08 16 21 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 25 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 34 H 0.07 1.37 6.64 -51.93 -0.34 1.02 16 35 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 36 H 0.10 0.76 7.68 -51.93 -0.40 0.36 16 37 H 0.10 0.82 7.95 -51.93 -0.41 0.40 16 38 H 0.09 0.93 8.10 -51.92 -0.42 0.51 16 39 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.14 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.42 1.30 8.96 -34.48 -0.31 0.99 16 43 H 0.41 0.39 8.96 -34.48 -0.31 0.08 16 44 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 45 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.38 9.18 5.94 -40.82 -0.24 8.94 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -36.33 397.29 -9.74 -46.07 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.96 Total: 8.68 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.68 Total: -6.07 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.58 Total: -55.70 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -2.00 Total: -34.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 19.84 SS G_CDS: -0.64 Total: 19.20 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.33 -9.74 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498893368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.828 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds