Wall clock time and date at job start Wed Apr 1 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46925 * 2 1 4 4 H 1.08993 * 109.49927 * 304.93291 * 3 2 1 5 5 C 1.53197 * 109.49933 * 64.99844 * 3 2 1 6 6 N 1.46923 * 108.77632 * 174.58235 * 5 3 2 7 7 C 1.34775 * 120.62874 * 126.36687 * 6 5 3 8 8 O 1.21287 * 120.00263 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00269 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47008 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46937 * 180.02562 * 11 10 9 13 13 N 1.65608 * 104.44741 * 179.97438 * 12 11 10 14 14 O 1.42095 * 110.54513 * 68.37365 * 12 11 10 15 15 O 1.42102 * 110.54191 * 291.62209 * 12 11 10 16 16 C 1.46919 * 118.74146 * 306.64449 * 6 5 3 17 17 C 1.52763 * 109.00681 * 53.30930 * 16 6 5 18 18 C 1.53038 * 109.38172 * 305.58648 * 17 16 6 19 19 H 1.09003 * 109.44600 * 181.25567 * 18 17 16 20 20 N 1.46503 * 109.46090 * 301.21713 * 18 17 16 21 21 C 1.36928 * 120.00142 * 275.06788 * 20 18 17 22 22 H 1.08002 * 120.00522 * 0.02562 * 21 20 18 23 23 C 1.38819 * 119.99862 * 180.02562 * 21 20 18 24 24 N 1.31613 * 119.99821 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99995 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46895 * 359.97438 * 25 23 21 27 27 H 1.48489 * 109.47141 * 119.99814 * 25 23 21 28 28 H 1.48505 * 109.46438 * 239.99827 * 25 23 21 29 29 H 1.09004 * 109.46922 * 60.00073 * 1 2 3 30 30 H 1.09002 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47129 * 300.00292 * 1 2 3 32 32 H 1.08997 * 109.47129 * 239.99708 * 2 1 3 33 33 H 1.09004 * 109.46922 * 119.99927 * 2 1 3 34 34 H 1.09001 * 109.58446 * 54.79596 * 5 3 2 35 35 H 1.08998 * 109.70063 * 294.44671 * 5 3 2 36 36 H 1.09004 * 109.46534 * 60.00666 * 9 7 6 37 37 H 1.08996 * 109.47069 * 300.00581 * 9 7 6 38 38 H 1.09008 * 109.46625 * 60.00287 * 10 9 7 39 39 H 1.09000 * 109.47210 * 300.00728 * 10 9 7 40 40 H 1.09000 * 109.47698 * 60.00135 * 11 10 9 41 41 H 1.09000 * 109.47377 * 300.00194 * 11 10 9 42 42 H 0.96998 * 119.99920 * 149.99961 * 13 12 11 43 43 H 0.96993 * 120.00416 * 329.99864 * 13 12 11 44 44 H 1.09000 * 109.58939 * 173.14326 * 16 6 5 45 45 H 1.08996 * 109.59352 * 293.57008 * 16 6 5 46 46 H 1.09002 * 109.56364 * 185.55175 * 17 16 6 47 47 H 1.09000 * 109.38696 * 65.51548 * 17 16 6 48 48 H 0.96998 * 119.99390 * 95.06867 * 20 18 17 49 49 H 0.97000 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6350 2.1281 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5580 1.5628 8 8 0.2849 4.4423 1.7240 9 6 2.1184 5.9233 1.6022 10 6 1.0427 6.9807 1.8582 11 6 1.6893 8.3667 1.8976 12 16 0.4140 9.6205 2.2018 13 7 1.2412 11.0551 2.2205 14 8 -0.1023 9.4970 3.5198 15 8 -0.4541 9.7305 1.0822 16 6 3.6912 3.5904 1.1468 17 6 4.0740 2.8880 -0.1547 18 6 3.5655 1.4450 -0.1215 19 1 3.8574 0.9362 -1.0403 20 7 4.1480 0.7485 1.0282 21 6 5.3860 0.1727 0.9247 22 1 5.9334 0.2323 -0.0045 23 6 5.9377 -0.4876 2.0140 24 7 5.2709 -0.5598 3.1464 25 14 7.6270 -1.2725 1.8730 26 1 8.1628 -1.0516 0.5057 27 1 8.5422 -0.6597 2.8688 28 1 7.5183 -2.7308 2.1320 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9906 1.5398 2.1547 35 1 0.5497 2.2172 1.3563 36 1 2.6062 6.1242 0.6484 37 1 2.8576 5.9563 2.4025 38 1 0.5552 6.7795 2.8122 39 1 0.3031 6.9478 1.0582 40 1 2.1766 8.5677 0.9435 41 1 2.4291 8.4000 2.6974 42 1 0.8020 11.8718 1.9360 43 1 2.1647 11.0787 2.5160 44 1 3.9622 4.6444 1.0849 45 1 4.2181 3.1239 1.9791 46 1 5.1584 2.8892 -0.2649 47 1 3.6223 3.4137 -0.9960 48 1 3.6566 0.6953 1.8628 49 1 5.6565 -1.0209 3.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498893368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:56 Heat of formation + Delta-G solvation = -143.922813 kcal Electronic energy + Delta-G solvation = -29453.129823 eV Core-core repulsion = 25347.652939 eV Total energy + Delta-G solvation = -4105.476885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39057 -39.31529 -38.05851 -36.96755 -35.86494 -35.74899 -35.26209 -33.97552 -33.38441 -31.00784 -30.54621 -29.08033 -26.34732 -25.39435 -25.00841 -23.34699 -22.12448 -20.73542 -20.34573 -19.61625 -19.21335 -18.54613 -18.22713 -17.89523 -17.31470 -16.97232 -16.76726 -16.43596 -16.13563 -15.84626 -15.63199 -15.43774 -14.97497 -14.76346 -14.52812 -14.37542 -14.11599 -13.76881 -13.53618 -13.28422 -13.15789 -13.13857 -13.10378 -13.03387 -12.95282 -12.87654 -12.75074 -12.62993 -12.33151 -12.11598 -12.03340 -11.91744 -11.82051 -11.67564 -11.57281 -11.44425 -11.16849 -11.10269 -10.87949 -10.68343 -9.55439 -8.89819 -7.87273 -5.13050 -0.68400 1.49337 1.51430 1.59467 1.65637 1.99152 2.10971 2.60902 2.78576 3.38003 3.44341 3.47163 3.75855 3.85147 3.88606 3.91257 4.01076 4.08509 4.11975 4.30239 4.39375 4.41743 4.45420 4.48476 4.60901 4.63819 4.68963 4.74745 4.88252 4.91904 4.92934 5.02874 5.06361 5.10112 5.18308 5.24471 5.28370 5.33300 5.35888 5.41289 5.52807 5.63041 5.70199 6.34671 6.43498 6.52558 7.19326 7.42253 8.19155 8.42271 9.36240 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002336 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.388761 B =11981.961679 C =13120.986593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.123 3.877 6 N -0.603 5.603 7 C 0.501 3.499 8 O -0.592 6.592 9 C -0.126 4.126 10 C -0.108 4.108 11 C -0.599 4.599 12 S 2.622 3.378 13 N -1.237 6.237 14 O -1.012 7.012 15 O -1.008 7.008 16 C 0.116 3.884 17 C -0.143 4.143 18 C 0.170 3.830 19 H 0.045 0.955 20 N -0.724 5.724 21 C -0.221 4.221 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.962 3.038 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.303 1.303 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.425 0.575 43 H 0.428 0.572 44 H 0.117 0.883 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.373 0.627 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 21.479 -6.831 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.102 0.898 5 C 0.000 4.000 6 N -0.334 5.334 7 C 0.292 3.708 8 O -0.474 6.474 9 C -0.167 4.167 10 C -0.148 4.148 11 C -0.731 4.731 12 S 2.717 3.283 13 N -0.914 5.914 14 O -1.001 7.001 15 O -0.998 6.998 16 C -0.005 4.005 17 C -0.184 4.184 18 C 0.061 3.939 19 H 0.063 0.937 20 N -0.366 5.366 21 C -0.354 4.354 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.231 1.231 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.193 0.807 41 H 0.189 0.811 42 H 0.255 0.745 43 H 0.258 0.742 44 H 0.135 0.865 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.206 0.794 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.699 21.127 -6.709 22.659 hybrid contribution 1.538 -0.979 0.669 1.942 sum -3.161 20.148 -6.040 21.270 Atomic orbital electron populations 1.21785 0.94921 1.01850 1.01785 1.21348 0.95942 0.95503 1.01656 1.21641 0.96004 0.96215 0.97218 0.89764 1.21459 0.98449 0.82604 0.97493 1.48219 1.09138 1.06218 1.69844 1.21453 0.86568 0.87620 0.75185 1.90667 1.16893 1.87474 1.52353 1.21735 0.99254 0.88270 1.07407 1.21079 0.98325 0.91446 1.03953 1.30282 1.17406 1.09462 1.15981 1.04136 0.75585 0.75575 0.73028 1.52809 1.27828 1.25456 1.85268 1.93580 1.78430 1.86643 1.41493 1.93557 1.65321 1.86128 1.54762 1.21671 0.78213 1.02383 0.98280 1.22321 1.01549 0.97382 0.97100 1.20472 0.90871 0.91961 0.90562 0.93682 1.42600 1.18178 1.64363 1.11412 1.19594 0.94163 1.24926 0.96676 0.90612 1.25373 1.01749 1.03348 0.96180 1.69809 1.39493 1.49933 1.02890 0.85230 0.80810 0.77246 0.77414 1.19049 1.22569 1.23120 0.91820 0.92250 0.93392 0.91949 0.93868 0.93766 0.90129 0.84973 0.85918 0.91180 0.90634 0.80707 0.81078 0.74454 0.74167 0.86530 0.93092 0.91203 0.90358 0.79404 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.67 71.98 0.70 -3.18 16 2 C -0.11 -3.36 5.19 30.59 0.16 -3.20 16 3 C -0.09 -2.80 2.14 -10.72 -0.02 -2.82 16 4 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 5 C 0.12 4.08 5.03 86.36 0.43 4.51 16 6 N -0.60 -17.37 2.98 -819.74 -2.44 -19.81 16 7 C 0.50 13.79 7.70 87.66 0.67 14.47 16 8 O -0.59 -21.07 15.39 -3.05 -0.05 -21.12 16 9 C -0.13 -1.98 4.05 29.85 0.12 -1.86 16 10 C -0.11 -1.77 4.51 30.59 0.14 -1.64 16 11 C -0.60 -3.95 6.17 71.98 0.44 -3.50 16 12 S 2.62 36.33 5.97 -56.49 -0.34 36.00 16 13 N -1.24 -6.53 9.36 37.02 0.35 -6.18 16 14 O -1.01 -24.20 18.10 -127.65 -2.31 -26.51 16 15 O -1.01 -22.93 18.10 -127.65 -2.31 -25.24 16 16 C 0.12 3.05 6.06 86.22 0.52 3.57 16 17 C -0.14 -3.94 5.76 30.53 0.18 -3.76 16 18 C 0.17 5.85 2.53 45.02 0.11 5.96 16 19 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 20 N -0.72 -32.34 3.72 -322.81 -1.20 -33.54 16 21 C -0.22 -11.17 9.93 84.04 0.83 -10.34 16 22 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.97 -56.85 13.06 21.65 0.28 -56.56 16 25 Si 0.96 44.21 29.55 68.60 2.03 46.24 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.32 6.70 -2.39 -0.02 1.31 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.65 7.69 -2.38 -0.02 1.63 16 34 H 0.04 1.72 6.64 -2.39 -0.02 1.71 16 35 H 0.08 2.76 5.73 -2.39 -0.01 2.74 16 36 H 0.13 1.22 7.68 -2.38 -0.02 1.20 16 37 H 0.12 1.40 7.95 -2.39 -0.02 1.38 16 38 H 0.07 1.41 8.10 -2.38 -0.02 1.39 16 39 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.18 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.42 1.86 8.96 -96.74 -0.87 0.99 16 43 H 0.43 -0.64 8.96 -96.75 -0.87 -1.50 16 44 H 0.12 1.95 5.94 -2.39 -0.01 1.94 16 45 H 0.05 1.72 7.74 -2.39 -0.02 1.70 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.37 18.48 5.94 -92.71 -0.55 17.92 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -83.62 397.29 -2.54 -86.16 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -1.30 Total: 25.93 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.76 Total: -5.35 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.01 Total: -116.10 kcal Atomic # 8 Polarization: -68.20 SS G_CDS: -4.67 Total: -72.87 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.34 Total: 36.00 kcal Total: -83.62 -2.54 -86.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498893368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.767 kcal (2) G-P(sol) polarization free energy of solvation -83.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds