Wall clock time and date at job start Wed Apr 1 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99975 * 2 1 4 4 H 1.48504 * 109.46786 * 85.15264 * 3 2 1 5 5 H 1.48503 * 109.47074 * 325.15654 * 3 2 1 6 6 H 1.48497 * 109.47227 * 205.15089 * 3 2 1 7 7 C 1.38816 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99417 * 5.16134 * 7 2 1 9 9 N 1.36935 * 120.00200 * 185.16890 * 7 2 1 10 10 C 1.46497 * 120.00146 * 185.08188 * 9 7 2 11 11 C 1.52999 * 109.47367 * 175.02082 * 10 9 7 12 12 H 1.09003 * 109.87126 * 304.42999 * 11 10 9 13 13 C 1.54318 * 109.88061 * 65.44523 * 11 10 9 14 14 C 1.55159 * 102.94075 * 141.61255 * 13 11 10 15 15 C 1.54909 * 101.58213 * 324.49637 * 14 13 11 16 16 N 1.47021 * 109.87999 * 183.25545 * 11 10 9 17 17 C 1.34773 * 125.65081 * 61.62198 * 16 11 10 18 18 O 1.21284 * 120.00098 * 5.04841 * 17 16 11 19 19 C 1.50699 * 119.99941 * 185.04413 * 17 16 11 20 20 C 1.52999 * 109.47056 * 179.97438 * 19 17 16 21 21 C 1.53008 * 109.47316 * 180.02562 * 20 19 17 22 22 C 1.52993 * 109.47259 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47366 * 180.02562 * 22 21 20 24 24 S 1.81393 * 109.47523 * 179.97438 * 23 22 21 25 25 N 1.65596 * 104.45236 * 180.02562 * 24 23 22 26 26 O 1.42105 * 110.54353 * 291.62341 * 24 23 22 27 27 O 1.42105 * 110.54500 * 68.37385 * 24 23 22 28 28 H 0.96992 * 120.00210 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99860 * 5.07983 * 9 7 2 30 30 H 1.08998 * 109.46811 * 295.01977 * 10 9 7 31 31 H 1.09003 * 109.47076 * 55.02037 * 10 9 7 32 32 H 1.09002 * 110.72032 * 259.97127 * 13 11 10 33 33 H 1.08994 * 110.72667 * 23.24742 * 13 11 10 34 34 H 1.09009 * 111.00361 * 82.56744 * 14 13 11 35 35 H 1.09002 * 111.00553 * 206.41882 * 14 13 11 36 36 H 1.08995 * 110.36652 * 155.84848 * 15 14 13 37 37 H 1.08995 * 110.36759 * 278.17126 * 15 14 13 38 38 H 1.08992 * 109.47983 * 300.00173 * 19 17 16 39 39 H 1.09004 * 109.46665 * 60.00878 * 19 17 16 40 40 H 1.08996 * 109.47762 * 300.00931 * 20 19 17 41 41 H 1.09002 * 109.46797 * 60.00674 * 20 19 17 42 42 H 1.08998 * 109.46998 * 300.00541 * 21 20 19 43 43 H 1.09002 * 109.46819 * 60.00464 * 21 20 19 44 44 H 1.09007 * 109.46887 * 300.00046 * 22 21 20 45 45 H 1.09002 * 109.47350 * 60.00147 * 22 21 20 46 46 H 1.08996 * 109.47011 * 300.00258 * 23 22 21 47 47 H 1.09002 * 109.46984 * 59.99656 * 23 22 21 48 48 H 0.97002 * 120.00495 * 149.99803 * 25 24 23 49 49 H 0.97004 * 119.99629 * 329.99992 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3952 2.1056 1.3951 5 1 1.5025 2.6210 -0.7999 6 1 3.5952 1.4129 -0.5950 7 6 2.0103 -1.2021 -0.0005 8 1 1.4736 -2.1355 -0.0851 9 7 3.3755 -1.2045 0.1063 10 6 4.1169 -2.4631 -0.0060 11 6 5.6191 -2.1746 0.0243 12 1 5.8753 -1.4615 -0.7593 13 6 6.0165 -1.6053 1.4025 14 6 7.3940 -2.2681 1.6682 15 6 7.1936 -3.6670 1.0336 16 7 6.3719 -3.4231 -0.1659 17 6 6.3192 -4.2138 -1.2560 18 8 5.6764 -3.8689 -2.2249 19 6 7.0591 -5.5266 -1.2710 20 6 6.8349 -6.2230 -2.6148 21 6 7.5856 -7.5562 -2.6299 22 6 7.3620 -8.2522 -3.9738 23 6 8.1121 -9.5856 -3.9887 24 16 7.8464 -10.4112 -5.5818 25 7 8.7022 -11.8239 -5.4630 26 8 6.4944 -10.8306 -5.7068 27 8 8.4915 -9.6969 -6.6274 28 1 -0.4850 0.8400 0.0004 29 1 3.8517 -0.3728 0.2563 30 1 3.8551 -3.1145 0.8278 31 1 3.8599 -2.9536 -0.9449 32 1 6.1127 -0.5204 1.3584 33 1 5.2940 -1.8988 2.1640 34 1 8.1934 -1.7225 1.1666 35 1 7.5892 -2.3484 2.7376 36 1 8.1549 -4.0978 0.7538 37 1 6.6687 -4.3257 1.7255 38 1 8.1243 -5.3451 -1.1287 39 1 6.6880 -6.1619 -0.4667 40 1 5.7696 -6.4046 -2.7568 41 1 7.2056 -5.5878 -3.4193 42 1 8.6510 -7.3749 -2.4877 43 1 7.2145 -8.1911 -1.8253 44 1 6.2966 -8.4334 -4.1163 45 1 7.7333 -7.6171 -4.7782 46 1 9.1774 -9.4048 -3.8460 47 1 7.7404 -10.2205 -3.1844 48 1 8.4068 -12.6120 -5.9453 49 1 9.4990 -11.8633 -4.9112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499962102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:33 Heat of formation + Delta-G solvation = -111.892574 kcal Electronic energy + Delta-G solvation = -27973.654896 eV Core-core repulsion = 23869.566947 eV Total energy + Delta-G solvation = -4104.087949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.16547 -37.74848 -37.44854 -36.44925 -36.30277 -34.68695 -33.70682 -32.91038 -31.65697 -31.42051 -29.28399 -27.87025 -25.29982 -23.98380 -22.54364 -21.93373 -21.55122 -20.48177 -19.87627 -18.93435 -18.08568 -17.77469 -17.52765 -16.93825 -16.83615 -16.41848 -16.12788 -15.64845 -15.18214 -14.72030 -14.42254 -14.03348 -13.97511 -13.83325 -13.53019 -13.16734 -13.03845 -12.79285 -12.68004 -12.61424 -12.53540 -12.47560 -12.38540 -12.32276 -12.07223 -11.70868 -11.49457 -11.47971 -11.30745 -11.14619 -11.12644 -10.92842 -10.88120 -10.76005 -10.66932 -10.51920 -10.10488 -9.66449 -9.54509 -8.82975 -8.51118 -7.18156 -5.72696 -3.07942 -0.24340 2.38412 2.74035 2.99392 3.20683 3.38956 3.44231 3.48176 3.76013 3.93187 4.33159 4.37473 4.44450 4.49266 4.63085 4.68116 4.79862 4.82323 4.85448 5.02149 5.11022 5.18782 5.25910 5.26819 5.40467 5.40874 5.43907 5.45065 5.50710 5.57195 5.60841 5.62937 5.73717 5.81636 5.92430 5.96248 5.99025 6.12071 6.26486 6.40808 6.49790 6.73138 6.89251 7.62742 8.04296 8.29968 8.46020 9.25241 9.96960 10.17181 11.45821 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.001741 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.287568 B =16083.041040 C =17357.747900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.750 5.750 10 C 0.151 3.849 11 C 0.126 3.874 12 H 0.075 0.925 13 C -0.126 4.126 14 C -0.134 4.134 15 C 0.101 3.899 16 N -0.615 5.615 17 C 0.522 3.478 18 O -0.527 6.527 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.621 4.621 24 S 2.612 3.388 25 N -1.253 6.253 26 O -0.961 6.961 27 O -0.961 6.961 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.420 0.580 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.014 -22.754 -0.831 35.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.023 3.977 11 C 0.023 3.977 12 H 0.093 0.907 13 C -0.164 4.164 14 C -0.172 4.172 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.311 3.689 18 O -0.403 6.403 19 C -0.173 4.173 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.751 4.751 24 S 2.704 3.296 25 N -0.925 5.925 26 O -0.950 6.950 27 O -0.950 6.950 28 H 0.069 0.931 29 H 0.192 0.808 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.250 0.750 49 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 25.799 -22.272 -2.282 34.159 hybrid contribution 1.111 0.837 0.887 1.650 sum 26.910 -21.434 -1.395 34.431 Atomic orbital electron populations 1.69707 1.05101 1.25750 1.57585 1.24690 0.95250 0.97144 1.02074 0.86546 0.79535 0.85151 0.77602 1.21180 1.21670 1.20135 1.19038 0.80704 0.94777 1.42463 0.89310 1.42545 1.04491 1.03548 1.89000 1.20916 0.87612 0.89785 0.99409 1.21833 0.93228 0.85349 0.97335 0.90709 1.22721 0.96383 1.00771 0.96574 1.22791 0.98090 0.95198 1.01115 1.22302 0.94780 0.97999 0.87128 1.48565 1.44855 1.24743 1.16891 1.20352 0.81745 0.85395 0.81442 1.90768 1.42438 1.73727 1.33378 1.21644 1.01137 0.94253 1.00314 1.21411 1.02009 0.95118 0.96385 1.21543 1.00930 0.96337 0.95995 1.21367 1.00804 0.92434 1.00863 1.30473 1.10764 1.10451 1.23379 1.04841 0.74051 0.73980 0.76767 1.53258 1.42996 1.31133 1.65108 1.93628 1.35115 1.80263 1.86029 1.93637 1.76166 1.73446 1.51717 0.93098 0.80815 0.95909 0.93890 0.90185 0.89628 0.90827 0.89893 0.90885 0.91259 0.89280 0.88976 0.90530 0.90773 0.91461 0.91302 0.89719 0.89851 0.84873 0.84541 0.75035 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.10 13.97 55.49 0.78 -29.32 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.56 27.70 -169.99 -4.71 17.85 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.69 6.60 56.52 0.37 -6.31 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -18.65 5.22 -59.91 -0.31 -18.97 16 10 C 0.15 3.19 5.63 -4.04 -0.02 3.17 16 11 C 0.13 2.07 2.95 -66.96 -0.20 1.88 16 12 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.13 -1.66 6.00 -24.90 -0.15 -1.81 16 14 C -0.13 -1.21 7.08 -24.58 -0.17 -1.39 16 15 C 0.10 0.92 6.65 -2.53 -0.02 0.90 16 16 N -0.62 -8.35 3.06 -163.02 -0.50 -8.85 16 17 C 0.52 7.51 7.58 -10.99 -0.08 7.43 16 18 O -0.53 -10.16 15.17 5.55 0.08 -10.08 16 19 C -0.13 -1.20 4.79 -27.88 -0.13 -1.33 16 20 C -0.11 -1.01 4.50 -26.73 -0.12 -1.13 16 21 C -0.11 -0.63 5.21 -26.73 -0.14 -0.77 16 22 C -0.12 -0.69 5.22 -26.73 -0.14 -0.83 16 23 C -0.62 -1.99 6.17 37.16 0.23 -1.76 16 24 S 2.61 15.47 5.97 -107.50 -0.64 14.83 16 25 N -1.25 -3.09 9.36 60.35 0.57 -2.52 16 26 O -0.96 -9.83 18.10 -57.54 -1.04 -10.87 16 27 O -0.96 -9.80 18.10 -57.54 -1.04 -10.84 16 28 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 29 H 0.36 8.53 5.37 -40.82 -0.22 8.31 16 30 H 0.02 0.48 8.06 -51.93 -0.42 0.07 16 31 H 0.04 1.04 6.93 -51.93 -0.36 0.68 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.19 7.80 -51.93 -0.40 0.79 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.59 7.77 -51.93 -0.40 0.18 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.14 0.18 8.14 -51.92 -0.42 -0.24 16 48 H 0.42 0.83 8.96 -34.47 -0.31 0.52 16 49 H 0.41 -0.21 8.96 -34.46 -0.31 -0.52 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -42.87 406.87 -10.21 -53.08 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.31 Total: 2.44 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.20 Total: -2.88 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.53 Total: -59.66 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -2.00 Total: -31.79 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Atomic # 16 Polarization: 15.47 SS G_CDS: -0.64 Total: 14.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -42.87 -10.21 -53.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499962102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.814 kcal (2) G-P(sol) polarization free energy of solvation -42.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds