Wall clock time and date at job start Wed Apr 1 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 7 7 O 1.21282 * 120.00541 * 35.00005 * 6 4 3 8 8 N 1.34782 * 119.99683 * 214.99744 * 6 4 3 9 9 C 1.46496 * 119.99938 * 359.97438 * 8 6 4 10 10 C 1.46507 * 119.99680 * 180.02562 * 8 6 4 11 11 H 1.08994 * 109.47173 * 359.97438 * 10 8 6 12 12 C 1.53001 * 109.46833 * 239.99752 * 10 8 6 13 13 N 1.46500 * 109.46794 * 55.00133 * 12 10 8 14 14 C 1.36937 * 119.99539 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47189 * 120.00136 * 18 16 14 21 21 H 1.48497 * 109.47510 * 239.99992 * 18 16 14 22 22 C 1.52996 * 109.46858 * 120.00065 * 10 8 6 23 23 C 1.52998 * 117.50038 * 248.74277 * 22 10 8 24 24 C 1.53002 * 117.49955 * 180.08171 * 22 10 8 25 25 S 1.81403 * 109.47108 * 294.99560 * 4 3 2 26 26 N 1.65594 * 104.45222 * 300.00451 * 25 4 3 27 27 O 1.42100 * 110.53903 * 51.62600 * 25 4 3 28 28 O 1.42091 * 110.54513 * 188.37756 * 25 4 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08998 * 109.47147 * 90.00072 * 9 8 6 37 37 H 1.09001 * 109.47147 * 210.00250 * 9 8 6 38 38 H 1.08995 * 109.47322 * 329.99853 * 9 8 6 39 39 H 1.08994 * 109.47225 * 175.00238 * 12 10 8 40 40 H 1.09004 * 109.47139 * 295.00345 * 12 10 8 41 41 H 0.96996 * 120.00521 * 359.97438 * 13 12 10 42 42 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 43 43 H 1.08999 * 115.55560 * 34.41587 * 22 10 8 44 44 H 1.09000 * 117.49700 * 0.02562 * 23 22 10 45 45 H 1.08997 * 117.50571 * 145.02244 * 23 22 10 46 46 H 1.08997 * 117.50498 * 214.98051 * 24 22 10 47 47 H 1.09008 * 117.49695 * 359.97438 * 24 22 10 48 48 H 0.97004 * 120.00347 * 149.99591 * 26 25 4 49 49 H 0.97007 * 119.99875 * 330.00037 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0723 2.8578 -0.1245 7 8 3.4636 3.7655 0.4013 8 7 5.1981 3.1149 -0.8194 9 6 5.9338 2.0184 -1.4539 10 6 5.6868 4.4909 -0.9393 11 1 5.0144 5.1629 -0.4062 12 6 5.7377 4.8870 -2.4163 13 7 4.4204 4.6799 -3.0230 14 6 4.2235 4.9686 -4.3470 15 1 5.0394 5.3486 -4.9440 16 6 2.9753 4.7729 -4.9219 17 7 1.9808 4.3103 -4.1942 18 14 2.7064 5.1674 -6.7279 19 1 3.9727 5.6699 -7.3186 20 1 2.2797 3.9388 -7.4448 21 1 1.6532 6.2063 -6.8562 22 6 7.0896 4.5881 -0.3366 23 6 7.2486 5.3891 0.9573 24 6 7.7768 5.9549 -0.3633 25 16 4.1753 0.7194 1.5491 26 7 3.5576 1.7002 2.7317 27 8 3.5626 -0.5411 1.7839 28 8 5.5826 0.8817 1.6589 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.5602 1.8685 -2.4669 37 1 6.9947 2.2660 -1.4908 38 1 5.7939 1.1048 -0.8762 39 1 6.0158 5.9375 -2.5013 40 1 6.4759 4.2728 -2.9320 41 1 3.6877 4.3383 -2.4870 42 1 1.1086 4.1732 -4.5960 43 1 7.7179 3.7065 -0.4631 44 1 6.3537 5.8463 1.3794 45 1 7.9817 5.0346 1.6819 46 1 8.8571 5.9724 -0.5070 47 1 7.2296 6.7847 -0.8108 48 1 3.3543 1.3355 3.6072 49 1 3.3990 2.6396 2.5488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507018888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:19 Heat of formation + Delta-G solvation = -69.369055 kcal Electronic energy + Delta-G solvation = -31236.286605 eV Core-core repulsion = 27134.042614 eV Total energy + Delta-G solvation = -4102.243991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.24651 -37.84283 -37.42017 -36.15709 -35.41240 -35.25910 -34.12793 -33.18407 -31.53539 -30.59968 -28.27520 -26.71057 -25.07037 -24.02056 -22.46689 -21.59979 -21.39141 -20.65651 -19.61593 -19.01139 -18.12764 -17.60068 -17.15023 -16.91621 -16.67933 -16.11642 -15.50591 -14.98577 -14.79953 -14.67046 -14.33731 -13.97652 -13.80646 -13.57781 -13.27652 -13.06615 -12.94114 -12.69923 -12.55371 -12.38134 -12.33257 -12.19594 -12.15423 -11.96543 -11.62791 -11.44556 -11.37704 -11.11415 -11.00568 -10.94257 -10.88692 -10.76783 -10.48439 -10.35256 -10.17701 -10.14309 -9.86309 -9.72131 -9.66638 -8.92128 -8.42485 -6.95167 -5.78841 -3.07963 -0.01686 2.55120 2.64608 3.02012 3.39958 3.40703 3.45938 3.48026 3.87247 4.00152 4.29218 4.53549 4.61811 4.77091 4.89411 5.02262 5.05751 5.11242 5.17158 5.23663 5.37083 5.51645 5.53585 5.60945 5.70434 5.73541 5.74729 5.83050 5.87243 5.91936 5.97881 5.98835 6.00322 6.18079 6.20304 6.21473 6.25981 6.26657 6.38671 6.47795 6.65841 6.82521 7.00529 7.44514 7.66958 8.14190 8.38885 9.50824 10.08004 10.43640 11.43318 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.004825 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.054484 B = 5802.209594 C = 8182.441304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C -0.087 4.087 4 C -0.612 4.612 5 H 0.160 0.840 6 C 0.539 3.461 7 O -0.524 6.524 8 N -0.577 5.577 9 C 0.071 3.929 10 C 0.161 3.839 11 H 0.104 0.896 12 C 0.148 3.852 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.162 4.162 23 C -0.177 4.177 24 C -0.169 4.169 25 S 2.627 3.373 26 N -1.243 6.243 27 O -0.952 6.952 28 O -0.951 6.951 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.419 0.581 49 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -6.873 13.458 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C -0.126 4.126 4 C -0.722 4.722 5 H 0.178 0.822 6 C 0.323 3.677 7 O -0.401 6.401 8 N -0.308 5.308 9 C -0.072 4.072 10 C 0.058 3.942 11 H 0.122 0.878 12 C 0.019 3.981 13 N -0.373 5.373 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.182 4.182 23 C -0.214 4.214 24 C -0.207 4.207 25 S 2.714 3.286 26 N -0.919 5.919 27 O -0.941 6.941 28 O -0.940 6.940 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.249 0.751 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.270 -7.224 13.511 16.554 hybrid contribution -0.872 0.679 -1.298 1.705 sum 5.397 -6.545 12.212 14.870 Atomic orbital electron populations 1.21679 0.95007 1.01637 1.02147 1.22201 0.97449 0.95674 1.04903 1.21305 0.86125 0.98816 1.06312 1.30689 1.10128 1.06920 1.24500 0.82213 1.19035 0.80689 0.88099 0.79845 1.90710 1.56009 1.45277 1.48067 1.47487 1.24408 1.08445 1.50417 1.21889 0.97992 0.88631 0.98648 1.21042 0.92864 0.82087 0.98182 0.87762 1.20946 0.90101 0.97931 0.89112 1.42302 1.06934 1.78998 1.09099 1.19243 0.95353 1.36166 0.86290 0.91203 1.24732 0.96002 1.02132 0.97975 1.69687 1.01586 1.51547 1.34920 0.86143 0.77591 0.77476 0.85108 1.20610 1.21956 1.21896 1.22550 0.97698 0.96225 1.01678 1.23021 1.03335 1.04091 0.90967 1.22935 1.00229 0.96632 1.00882 1.04557 0.74555 0.73918 0.75540 1.53057 1.86236 1.24726 1.27864 1.93540 1.77058 1.40180 1.83308 1.93633 1.29853 1.85929 1.84557 0.92674 0.92373 0.92597 0.91407 0.88096 0.89767 0.88297 0.90782 0.90076 0.92281 0.95061 0.95863 0.78037 0.93643 0.87331 0.88669 0.88971 0.88769 0.88302 0.75139 0.74787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.16 -2.01 5.65 -26.74 -0.15 -2.16 16 3 C -0.09 -1.17 4.22 -26.73 -0.11 -1.29 16 4 C -0.61 -8.21 2.00 -27.88 -0.06 -8.27 16 5 H 0.16 1.87 6.35 -51.93 -0.33 1.54 16 6 C 0.54 8.82 6.05 -10.98 -0.07 8.76 16 7 O -0.52 -9.58 14.59 5.56 0.08 -9.50 16 8 N -0.58 -9.25 2.24 -173.94 -0.39 -9.64 16 9 C 0.07 0.97 8.98 59.84 0.54 1.51 16 10 C 0.16 2.68 2.42 -67.93 -0.16 2.51 16 11 H 0.10 1.92 6.66 -51.93 -0.35 1.58 16 12 C 0.15 2.88 5.33 -4.04 -0.02 2.85 16 13 N -0.73 -18.07 5.43 -59.91 -0.33 -18.40 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 C -0.16 -2.17 5.15 -90.62 -0.47 -2.63 16 23 C -0.18 -2.13 10.18 -26.69 -0.27 -2.40 16 24 C -0.17 -1.99 9.80 -26.69 -0.26 -2.25 16 25 S 2.63 32.46 5.38 -107.50 -0.58 31.89 16 26 N -1.24 -12.60 8.91 60.35 0.54 -12.06 16 27 O -0.95 -12.88 14.89 -57.54 -0.86 -13.73 16 28 O -0.95 -13.97 17.33 -57.54 -1.00 -14.97 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.23 4.90 -51.93 -0.25 0.98 16 34 H 0.08 1.05 7.63 -51.93 -0.40 0.65 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.96 6.42 -51.93 -0.33 0.62 16 38 H 0.06 0.67 5.67 -51.93 -0.29 0.38 16 39 H 0.03 0.62 7.47 -51.93 -0.39 0.23 16 40 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 41 H 0.39 10.28 7.06 -40.82 -0.29 9.99 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 1.36 6.58 -51.93 -0.34 1.02 16 44 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 1.22 7.67 -51.92 -0.40 0.82 16 48 H 0.42 3.20 8.96 -34.47 -0.31 2.89 16 49 H 0.42 4.40 7.54 -34.47 -0.26 4.14 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -34.54 397.98 -9.44 -43.97 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -7.69 Total: 18.05 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.91 Total: -11.84 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: 0.55 Total: -67.05 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.77 Total: -38.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 32.46 SS G_CDS: -0.58 Total: 31.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.54 -9.44 -43.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507018888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.396 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds