Wall clock time and date at job start Wed Apr 1 2020 05:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 7 7 O 1.21282 * 120.00541 * 35.00005 * 6 4 3 8 8 N 1.34782 * 119.99683 * 214.99744 * 6 4 3 9 9 C 1.46496 * 119.99938 * 359.97438 * 8 6 4 10 10 C 1.46507 * 119.99680 * 180.02562 * 8 6 4 11 11 H 1.08994 * 109.47173 * 359.97438 * 10 8 6 12 12 C 1.53001 * 109.46833 * 239.99752 * 10 8 6 13 13 N 1.46500 * 109.46794 * 55.00133 * 12 10 8 14 14 C 1.36937 * 119.99539 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47189 * 120.00136 * 18 16 14 21 21 H 1.48497 * 109.47510 * 239.99992 * 18 16 14 22 22 C 1.52996 * 109.46858 * 120.00065 * 10 8 6 23 23 C 1.52998 * 117.50038 * 248.74277 * 22 10 8 24 24 C 1.53002 * 117.49955 * 180.08171 * 22 10 8 25 25 S 1.81403 * 109.47108 * 294.99560 * 4 3 2 26 26 N 1.65594 * 104.45222 * 300.00451 * 25 4 3 27 27 O 1.42100 * 110.53903 * 51.62600 * 25 4 3 28 28 O 1.42091 * 110.54513 * 188.37756 * 25 4 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08998 * 109.47147 * 90.00072 * 9 8 6 37 37 H 1.09001 * 109.47147 * 210.00250 * 9 8 6 38 38 H 1.08995 * 109.47322 * 329.99853 * 9 8 6 39 39 H 1.08994 * 109.47225 * 175.00238 * 12 10 8 40 40 H 1.09004 * 109.47139 * 295.00345 * 12 10 8 41 41 H 0.96996 * 120.00521 * 359.97438 * 13 12 10 42 42 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 43 43 H 1.08999 * 115.55560 * 34.41587 * 22 10 8 44 44 H 1.09000 * 117.49700 * 0.02562 * 23 22 10 45 45 H 1.08997 * 117.50571 * 145.02244 * 23 22 10 46 46 H 1.08997 * 117.50498 * 214.98051 * 24 22 10 47 47 H 1.09008 * 117.49695 * 359.97438 * 24 22 10 48 48 H 0.97004 * 120.00347 * 149.99591 * 26 25 4 49 49 H 0.97007 * 119.99875 * 330.00037 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0723 2.8578 -0.1245 7 8 3.4636 3.7655 0.4013 8 7 5.1981 3.1149 -0.8194 9 6 5.9338 2.0184 -1.4539 10 6 5.6868 4.4909 -0.9393 11 1 5.0144 5.1629 -0.4062 12 6 5.7377 4.8870 -2.4163 13 7 4.4204 4.6799 -3.0230 14 6 4.2235 4.9686 -4.3470 15 1 5.0394 5.3486 -4.9440 16 6 2.9753 4.7729 -4.9219 17 7 1.9808 4.3103 -4.1942 18 14 2.7064 5.1674 -6.7279 19 1 3.9727 5.6699 -7.3186 20 1 2.2797 3.9388 -7.4448 21 1 1.6532 6.2063 -6.8562 22 6 7.0896 4.5881 -0.3366 23 6 7.2486 5.3891 0.9573 24 6 7.7768 5.9549 -0.3633 25 16 4.1753 0.7194 1.5491 26 7 3.5576 1.7002 2.7317 27 8 3.5626 -0.5411 1.7839 28 8 5.5826 0.8817 1.6589 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.5602 1.8685 -2.4669 37 1 6.9947 2.2660 -1.4908 38 1 5.7939 1.1048 -0.8762 39 1 6.0158 5.9375 -2.5013 40 1 6.4759 4.2728 -2.9320 41 1 3.6877 4.3383 -2.4870 42 1 1.1086 4.1732 -4.5960 43 1 7.7179 3.7065 -0.4631 44 1 6.3537 5.8463 1.3794 45 1 7.9817 5.0346 1.6819 46 1 8.8571 5.9724 -0.5070 47 1 7.2296 6.7847 -0.8108 48 1 3.3543 1.3355 3.6072 49 1 3.3990 2.6396 2.5488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507018888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:18 Heat of formation + Delta-G solvation = -94.926337 kcal Electronic energy + Delta-G solvation = -31237.394852 eV Core-core repulsion = 27134.042614 eV Total energy + Delta-G solvation = -4103.352238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.50641 -39.02207 -38.49725 -37.24475 -36.64045 -36.44399 -35.84797 -34.08189 -33.27633 -31.88032 -29.78098 -27.91279 -26.46796 -25.55830 -23.75861 -22.88173 -22.41780 -21.78354 -20.71172 -20.23945 -19.18441 -19.14223 -18.63819 -18.07184 -17.77630 -17.22833 -16.67791 -16.53732 -16.20823 -15.83905 -15.47105 -15.40268 -15.04523 -14.95667 -14.70676 -14.64441 -14.10532 -13.95858 -13.66681 -13.57998 -13.37579 -13.31198 -13.24810 -13.18332 -13.12187 -12.91625 -12.78743 -12.39704 -12.38563 -12.20428 -12.07615 -12.01849 -11.95137 -11.79561 -11.41079 -11.36463 -11.23847 -11.03476 -10.91782 -10.85463 -9.70219 -9.00064 -7.94417 -5.23572 -1.05317 1.32115 1.45188 1.46009 1.55717 1.58000 1.88602 2.38233 2.53534 2.78279 2.94869 3.21166 3.38873 3.55662 3.61118 3.82051 3.98000 4.02849 4.09452 4.14217 4.16015 4.22651 4.31674 4.42077 4.50529 4.55622 4.67254 4.71018 4.79517 4.83341 4.89398 4.91035 4.96499 5.05996 5.08106 5.12102 5.21869 5.23253 5.29848 5.31208 5.46774 5.47134 5.52406 6.18855 6.24733 6.25991 6.87942 7.33001 8.07933 8.31939 9.28321 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009059 B = 0.004825 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.054484 B = 5802.209594 C = 8182.441304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.163 4.163 3 C -0.083 4.083 4 C -0.614 4.614 5 H 0.174 0.826 6 C 0.529 3.471 7 O -0.551 6.551 8 N -0.582 5.582 9 C 0.063 3.937 10 C 0.168 3.832 11 H 0.079 0.921 12 C 0.148 3.852 13 N -0.740 5.740 14 C -0.241 4.241 15 H 0.076 0.924 16 C -0.073 4.073 17 N -0.965 5.965 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.297 1.297 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.159 4.159 25 S 2.653 3.347 26 N -1.234 6.234 27 O -0.959 6.959 28 O -0.968 6.968 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.431 0.569 49 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -7.495 13.944 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C -0.122 4.122 4 C -0.723 4.723 5 H 0.191 0.809 6 C 0.315 3.685 7 O -0.430 6.430 8 N -0.312 5.312 9 C -0.079 4.079 10 C 0.065 3.935 11 H 0.098 0.902 12 C 0.021 3.979 13 N -0.383 5.383 14 C -0.373 4.373 15 H 0.094 0.906 16 C -0.265 4.265 17 N -0.615 5.615 18 Si 0.800 3.200 19 H -0.190 1.190 20 H -0.221 1.221 21 H -0.225 1.225 22 C -0.192 4.192 23 C -0.209 4.209 24 C -0.196 4.196 25 S 2.739 3.261 26 N -0.914 5.914 27 O -0.948 6.948 28 O -0.957 6.957 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.141 0.859 44 H 0.103 0.897 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.107 0.893 48 H 0.264 0.736 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 8.013 -7.844 13.994 17.933 hybrid contribution -1.363 0.912 -1.402 2.158 sum 6.650 -6.932 12.592 15.838 Atomic orbital electron populations 1.21717 0.94393 1.02622 1.01994 1.22219 0.98074 0.94510 1.05275 1.21250 0.86307 0.99602 1.05041 1.30768 1.09943 1.05344 1.26253 0.80905 1.19505 0.80476 0.89027 0.79542 1.90684 1.56684 1.46398 1.49259 1.47625 1.24556 1.08719 1.50278 1.22091 0.98883 0.88914 0.98030 1.20823 0.94536 0.82223 0.95930 0.90245 1.21096 0.87746 0.98091 0.91005 1.42483 1.08557 1.78833 1.08442 1.19631 0.95413 1.34736 0.87497 0.90566 1.25516 0.95999 1.02993 1.02004 1.69851 1.01775 1.53365 1.36538 0.85114 0.77641 0.76777 0.80439 1.19004 1.22112 1.22478 1.22475 0.95906 0.97785 1.03002 1.23074 1.03418 1.03295 0.91080 1.23014 1.01341 0.95067 1.00202 1.03746 0.73935 0.73485 0.74943 1.52858 1.85933 1.24498 1.28096 1.93526 1.77151 1.40886 1.83219 1.93611 1.31153 1.86273 1.84668 0.91817 0.93617 0.91034 0.91102 0.87542 0.89012 0.91656 0.92272 0.87940 0.90136 0.94952 0.94729 0.79505 0.94259 0.85858 0.89665 0.87047 0.86364 0.89271 0.73588 0.74646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.16 -3.90 5.65 30.59 0.17 -3.72 16 3 C -0.08 -2.30 4.22 30.59 0.13 -2.17 16 4 C -0.61 -16.43 2.00 29.85 0.06 -16.37 16 5 H 0.17 4.02 6.35 -2.40 -0.02 4.00 16 6 C 0.53 17.56 6.05 87.66 0.53 18.09 16 7 O -0.55 -20.83 14.59 -3.04 -0.04 -20.88 16 8 N -0.58 -18.58 2.24 -822.60 -1.85 -20.42 16 9 C 0.06 1.65 8.98 127.77 1.15 2.80 16 10 C 0.17 5.57 2.42 44.99 0.11 5.68 16 11 H 0.08 3.02 6.66 -2.39 -0.02 3.01 16 12 C 0.15 5.74 5.33 86.38 0.46 6.20 16 13 N -0.74 -37.31 5.43 -343.45 -1.87 -39.18 16 14 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 15 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 17 N -0.96 -58.97 13.06 21.65 0.28 -58.69 16 18 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C -0.17 -4.31 5.15 -10.79 -0.06 -4.37 16 23 C -0.17 -3.81 10.18 30.62 0.31 -3.50 16 24 C -0.16 -3.39 9.80 30.62 0.30 -3.09 16 25 S 2.65 62.18 5.38 -56.49 -0.30 61.87 16 26 N -1.23 -23.56 8.91 37.02 0.33 -23.23 16 27 O -0.96 -24.27 14.89 -127.65 -1.90 -26.17 16 28 O -0.97 -26.78 17.33 -127.65 -2.21 -29.00 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 2.45 4.90 -2.39 -0.01 2.44 16 34 H 0.09 2.32 7.63 -2.39 -0.02 2.30 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 2.21 6.42 -2.39 -0.02 2.19 16 38 H 0.08 1.73 5.67 -2.39 -0.01 1.72 16 39 H 0.03 1.26 7.47 -2.39 -0.02 1.25 16 40 H 0.03 1.28 7.84 -2.38 -0.02 1.27 16 41 H 0.37 20.55 7.06 -92.71 -0.65 19.89 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.12 2.74 6.58 -2.39 -0.02 2.72 16 44 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 45 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.09 2.09 7.67 -2.38 -0.02 2.07 16 48 H 0.43 5.88 8.96 -96.74 -0.87 5.01 16 49 H 0.42 8.54 7.54 -96.74 -0.73 7.81 16 Total: -1.00 -74.06 397.98 -1.61 -75.67 By element: Atomic # 1 Polarization: 52.40 SS G_CDS: -1.26 Total: 51.14 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 5.18 Total: -19.20 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -3.10 Total: -141.52 kcal Atomic # 8 Polarization: -71.88 SS G_CDS: -4.16 Total: -76.04 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 62.18 SS G_CDS: -0.30 Total: 61.87 kcal Total: -74.06 -1.61 -75.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507018888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -74.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds