Wall clock time and date at job start Wed Apr 1 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99670 * 2 1 4 4 C 1.53001 * 109.46990 * 275.29952 * 3 2 1 5 5 H 1.08990 * 112.73793 * 43.29135 * 4 3 2 6 6 C 1.53497 * 113.51914 * 272.49484 * 4 3 2 7 7 C 1.53754 * 83.25838 * 218.97683 * 6 4 3 8 8 N 1.47061 * 87.88966 * 26.24229 * 7 6 4 9 9 C 1.36932 * 136.06187 * 152.96661 * 8 7 6 10 10 H 1.08003 * 120.00377 * 175.05045 * 9 8 7 11 11 C 1.38809 * 119.99680 * 355.32141 * 9 8 7 12 12 N 1.31624 * 120.00126 * 359.72890 * 11 9 8 13 13 Si 1.86802 * 120.00147 * 179.72461 * 11 9 8 14 14 H 1.48499 * 109.46921 * 90.00035 * 13 11 9 15 15 H 1.48499 * 109.47226 * 210.00049 * 13 11 9 16 16 H 1.48501 * 109.46971 * 330.00364 * 13 11 9 17 17 C 1.34771 * 120.00083 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00055 * 180.02562 * 17 2 1 19 19 C 1.50703 * 120.00245 * 359.97438 * 17 2 1 20 20 S 1.81402 * 109.47378 * 179.97438 * 19 17 2 21 21 O 1.42098 * 110.54204 * 282.96438 * 20 19 17 22 22 O 1.42099 * 110.53736 * 59.71291 * 20 19 17 23 23 N 1.65597 * 104.44903 * 171.33872 * 20 19 17 24 24 C 1.46502 * 120.00043 * 59.47217 * 23 20 19 25 25 C 1.53007 * 109.46865 * 37.90490 * 24 23 20 26 26 C 1.53002 * 109.46937 * 157.90075 * 24 23 20 27 27 C 1.52994 * 109.47124 * 277.90459 * 24 23 20 28 28 H 1.08999 * 109.46755 * 86.60589 * 1 2 3 29 29 H 1.08998 * 109.47047 * 206.60601 * 1 2 3 30 30 H 1.08995 * 109.47299 * 326.60483 * 1 2 3 31 31 H 1.08997 * 109.47061 * 155.29994 * 3 2 1 32 32 H 1.09000 * 109.47703 * 35.30047 * 3 2 1 33 33 H 1.08999 * 114.21322 * 332.73428 * 6 4 3 34 34 H 1.09000 * 114.20199 * 105.36160 * 6 4 3 35 35 H 1.09003 * 113.46025 * 271.50535 * 7 6 4 36 36 H 1.08998 * 113.55301 * 140.98913 * 7 6 4 37 37 H 0.97001 * 119.99790 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47170 * 300.00130 * 19 17 2 39 39 H 1.09007 * 109.46991 * 59.99850 * 19 17 2 40 40 H 0.96997 * 119.99927 * 239.47208 * 23 20 19 41 41 H 1.09001 * 109.47176 * 59.99793 * 25 24 23 42 42 H 1.08994 * 109.47099 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46993 * 299.99779 * 25 24 23 44 44 H 1.09001 * 109.46979 * 60.00452 * 26 24 23 45 45 H 1.09002 * 109.46939 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.46962 * 299.99994 * 26 24 23 47 47 H 1.08992 * 109.47561 * 67.64899 * 27 24 23 48 48 H 1.09005 * 109.46800 * 187.64995 * 27 24 23 49 49 H 1.08994 * 109.47295 * 307.64157 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3370 1.7770 -1.4364 5 1 1.4167 1.6739 -2.0110 6 6 3.5750 1.2314 -2.1616 7 6 3.6448 2.6572 -2.7330 8 7 2.9379 3.1163 -1.5279 9 6 2.8659 4.2803 -0.8103 10 1 2.1808 4.3610 0.0208 11 6 3.6693 5.3586 -1.1546 12 7 4.5042 5.2604 -2.1674 13 14 3.5657 6.9492 -0.1806 14 1 4.5345 6.9050 0.9440 15 1 3.8893 8.0951 -1.0680 16 1 2.1908 7.1120 0.3566 17 6 2.1389 -1.1671 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 0.0017 20 16 2.5643 -3.8511 0.0014 21 8 3.1142 -4.0367 -1.2957 22 8 3.3992 -3.7934 1.1498 23 7 1.6281 -5.1952 0.2442 24 6 0.5616 -5.5262 -0.7042 25 6 1.0267 -5.2068 -2.1264 26 6 0.2296 -7.0160 -0.5987 27 6 -0.6850 -4.7015 -0.3780 28 1 -0.3633 0.0608 -1.0259 29 1 -0.3633 -0.9188 0.4602 30 1 -0.3633 0.8579 0.5656 31 1 3.1877 1.1166 0.4294 32 1 1.6528 2.0028 0.5938 33 1 4.4014 0.9703 -1.5006 34 1 3.3561 0.4622 -2.9022 35 1 3.0691 2.7860 -3.6495 36 1 4.6604 3.0445 -2.8145 37 1 5.0654 6.0141 -2.4082 38 1 0.7592 -2.5295 0.8919 39 1 0.7584 -2.5307 -0.8881 40 1 1.7857 -5.7634 1.0144 41 1 1.9149 -5.7944 -2.3588 42 1 0.2332 -5.4526 -2.8320 43 1 1.2633 -4.1455 -2.2016 44 1 -0.1017 -7.2436 0.4145 45 1 -0.5635 -7.2624 -1.3046 46 1 1.1178 -7.6035 -0.8311 47 1 -0.4888 -3.6493 -0.5839 48 1 -1.5177 -5.0429 -0.9930 49 1 -0.9369 -4.8248 0.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565833802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:45 Heat of formation + Delta-G solvation = -34.843295 kcal Electronic energy + Delta-G solvation = -30263.241808 eV Core-core repulsion = 26162.494966 eV Total energy + Delta-G solvation = -4100.746842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.04706 -38.56548 -37.95835 -37.05197 -36.01179 -35.47351 -32.22703 -31.42006 -31.13741 -28.32495 -27.86736 -27.76122 -27.66148 -26.30108 -23.37313 -22.42765 -21.05115 -19.84386 -19.16688 -19.07598 -18.13611 -17.11358 -16.88655 -16.64290 -16.48342 -15.96451 -15.58084 -15.14784 -14.72777 -14.65316 -14.39328 -14.03731 -13.85438 -13.70383 -13.39723 -13.20122 -12.90366 -12.82185 -12.71374 -12.69115 -12.26862 -12.22826 -12.06169 -12.01993 -11.90714 -11.87875 -11.69712 -11.49186 -11.21197 -11.04203 -10.94159 -10.85064 -10.73554 -10.39132 -10.19170 -9.95438 -9.81214 -9.74538 -9.50782 -8.76881 -8.43542 -6.85131 -5.73648 -3.08073 -0.01238 2.40189 2.48637 2.88982 3.39723 3.43356 3.46184 3.64816 3.95427 4.02773 4.22645 4.38019 4.45402 4.46608 4.61738 4.69196 4.87443 4.96734 5.07244 5.11366 5.23995 5.25942 5.28722 5.37041 5.41744 5.46317 5.54920 5.58788 5.59658 5.67004 5.84197 5.85176 5.96443 6.01938 6.04837 6.41066 6.43268 6.61773 6.62780 6.76947 6.81509 7.27777 7.28158 7.51368 7.64827 7.96286 8.02484 9.04506 9.72219 10.67248 11.42729 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002508 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.686343 B =11161.099868 C =11320.595618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.596 5.596 3 C 0.110 3.890 4 C 0.130 3.870 5 H 0.041 0.959 6 C -0.160 4.160 7 C 0.147 3.853 8 N -0.600 5.600 9 C -0.220 4.220 10 H 0.079 0.921 11 C -0.006 4.006 12 N -0.916 5.916 13 Si 0.912 3.088 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.538 3.462 18 O -0.527 6.527 19 C -0.677 4.677 20 S 2.645 3.355 21 O -0.936 6.936 22 O -0.941 6.941 23 N -1.115 6.115 24 C 0.165 3.835 25 C -0.178 4.178 26 C -0.148 4.148 27 C -0.183 4.183 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.418 0.582 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -24.910 3.794 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C -0.012 4.012 4 C 0.021 3.979 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.022 3.978 8 N -0.326 5.326 9 C -0.348 4.348 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.563 5.563 13 Si 0.742 3.258 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.322 3.678 18 O -0.404 6.404 19 C -0.804 4.804 20 S 2.732 3.268 21 O -0.926 6.926 22 O -0.931 6.931 23 N -0.875 5.875 24 C 0.077 3.923 25 C -0.237 4.237 26 C -0.207 4.207 27 C -0.242 4.242 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.252 0.748 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.741 -24.343 3.607 28.185 hybrid contribution -1.192 1.069 0.795 1.788 sum -14.934 -23.274 4.402 28.001 Atomic orbital electron populations 1.21892 0.79584 1.03059 1.02456 1.47739 1.07063 1.06282 1.71711 1.22116 0.97831 0.81596 0.99682 1.22444 0.95420 0.87174 0.92816 0.94159 1.23727 0.98589 0.97557 0.99943 1.22169 0.98698 0.88091 0.88859 1.45601 1.51857 1.07302 1.27837 1.18852 1.18420 0.88393 1.09087 0.90364 1.24803 0.98707 0.98316 0.98496 1.69838 1.26701 1.30864 1.28864 0.86130 0.77550 0.83046 0.79037 1.21443 1.21652 1.20772 1.19056 0.87242 0.84053 0.77411 1.90879 1.12800 1.86714 1.50017 1.31408 1.20453 1.15548 1.13034 1.04202 0.73794 0.73907 0.74855 1.93634 1.74414 1.83640 1.40881 1.93593 1.62487 1.85603 1.51426 1.55965 1.51008 1.43270 1.37265 1.20269 0.86482 0.96770 0.88787 1.22612 1.02987 1.03716 0.94336 1.22036 1.02536 0.93467 1.02652 1.22673 0.97928 1.00468 1.03138 0.92022 0.91223 0.90488 0.88792 0.90458 0.89800 0.93145 0.96145 0.90513 0.93623 0.82358 0.82267 0.74756 0.89952 0.90808 0.91459 0.91891 0.90993 0.91530 0.91890 0.90577 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 10.34 59.85 0.62 1.30 16 2 N -0.60 -8.44 2.87 -181.57 -0.52 -8.96 16 3 C 0.11 2.01 5.46 -4.04 -0.02 1.99 16 4 C 0.13 2.71 4.30 -72.39 -0.31 2.39 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.42 8.03 -26.08 -0.21 -3.63 16 7 C 0.15 3.67 7.52 -8.38 -0.06 3.61 16 8 N -0.60 -15.59 3.64 -176.84 -0.64 -16.23 16 9 C -0.22 -6.14 10.55 -15.06 -0.16 -6.30 16 10 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.71 11.43 55.49 0.63 -27.07 16 13 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.54 8.03 7.69 -10.99 -0.08 7.95 16 18 O -0.53 -10.27 15.09 -0.03 0.00 -10.27 16 19 C -0.68 -6.37 3.28 36.01 0.12 -6.25 16 20 S 2.64 31.32 4.26 -107.50 -0.46 30.86 16 21 O -0.94 -13.84 14.56 -57.54 -0.84 -14.68 16 22 O -0.94 -14.93 17.73 -61.56 -1.09 -16.02 16 23 N -1.11 -7.94 5.42 0.54 0.00 -7.94 16 24 C 0.17 0.93 1.15 -131.82 -0.15 0.77 16 25 C -0.18 -1.29 7.09 37.16 0.26 -1.03 16 26 C -0.15 -0.60 8.64 37.16 0.32 -0.28 16 27 C -0.18 -0.69 8.33 37.15 0.31 -0.38 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 6.32 -51.93 -0.33 0.08 16 30 H 0.08 0.68 7.99 -51.93 -0.41 0.26 16 31 H 0.09 1.94 6.99 -51.93 -0.36 1.58 16 32 H 0.08 1.37 7.99 -51.93 -0.42 0.95 16 33 H 0.08 1.91 7.93 -51.93 -0.41 1.49 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 2.12 6.93 -51.93 -0.36 1.76 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.16 0.89 7.37 -51.93 -0.38 0.50 16 39 H 0.16 1.02 5.51 -51.92 -0.29 0.73 16 40 H 0.42 2.26 8.67 -34.47 -0.30 1.96 16 41 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.56 5.18 -51.93 -0.27 0.29 16 44 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.21 4.79 -51.93 -0.25 -0.04 16 48 H 0.08 0.20 8.13 -51.93 -0.42 -0.22 16 49 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -38.74 394.70 -9.41 -48.14 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.95 Total: -0.85 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.53 Total: -0.14 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.53 Total: -60.21 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.93 Total: -40.97 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 31.32 SS G_CDS: -0.46 Total: 30.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.74 -9.41 -48.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565833802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.301 kcal (2) G-P(sol) polarization free energy of solvation -38.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds