Wall clock time and date at job start Wed Apr 1 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99670 * 2 1 4 4 C 1.53001 * 109.46990 * 275.29952 * 3 2 1 5 5 H 1.08990 * 112.73793 * 43.29135 * 4 3 2 6 6 C 1.53497 * 113.51914 * 272.49484 * 4 3 2 7 7 C 1.53754 * 83.25838 * 218.97683 * 6 4 3 8 8 N 1.47061 * 87.88966 * 26.24229 * 7 6 4 9 9 C 1.36932 * 136.06187 * 152.96661 * 8 7 6 10 10 H 1.08003 * 120.00377 * 175.05045 * 9 8 7 11 11 C 1.38809 * 119.99680 * 355.32141 * 9 8 7 12 12 N 1.31624 * 120.00126 * 359.72890 * 11 9 8 13 13 Si 1.86802 * 120.00147 * 179.72461 * 11 9 8 14 14 H 1.48499 * 109.46921 * 90.00035 * 13 11 9 15 15 H 1.48499 * 109.47226 * 210.00049 * 13 11 9 16 16 H 1.48501 * 109.46971 * 330.00364 * 13 11 9 17 17 C 1.34771 * 120.00083 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00055 * 180.02562 * 17 2 1 19 19 C 1.50703 * 120.00245 * 359.97438 * 17 2 1 20 20 S 1.81402 * 109.47378 * 179.97438 * 19 17 2 21 21 O 1.42098 * 110.54204 * 282.96438 * 20 19 17 22 22 O 1.42099 * 110.53736 * 59.71291 * 20 19 17 23 23 N 1.65597 * 104.44903 * 171.33872 * 20 19 17 24 24 C 1.46502 * 120.00043 * 59.47217 * 23 20 19 25 25 C 1.53007 * 109.46865 * 37.90490 * 24 23 20 26 26 C 1.53002 * 109.46937 * 157.90075 * 24 23 20 27 27 C 1.52994 * 109.47124 * 277.90459 * 24 23 20 28 28 H 1.08999 * 109.46755 * 86.60589 * 1 2 3 29 29 H 1.08998 * 109.47047 * 206.60601 * 1 2 3 30 30 H 1.08995 * 109.47299 * 326.60483 * 1 2 3 31 31 H 1.08997 * 109.47061 * 155.29994 * 3 2 1 32 32 H 1.09000 * 109.47703 * 35.30047 * 3 2 1 33 33 H 1.08999 * 114.21322 * 332.73428 * 6 4 3 34 34 H 1.09000 * 114.20199 * 105.36160 * 6 4 3 35 35 H 1.09003 * 113.46025 * 271.50535 * 7 6 4 36 36 H 1.08998 * 113.55301 * 140.98913 * 7 6 4 37 37 H 0.97001 * 119.99790 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47170 * 300.00130 * 19 17 2 39 39 H 1.09007 * 109.46991 * 59.99850 * 19 17 2 40 40 H 0.96997 * 119.99927 * 239.47208 * 23 20 19 41 41 H 1.09001 * 109.47176 * 59.99793 * 25 24 23 42 42 H 1.08994 * 109.47099 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46993 * 299.99779 * 25 24 23 44 44 H 1.09001 * 109.46979 * 60.00452 * 26 24 23 45 45 H 1.09002 * 109.46939 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.46962 * 299.99994 * 26 24 23 47 47 H 1.08992 * 109.47561 * 67.64899 * 27 24 23 48 48 H 1.09005 * 109.46800 * 187.64995 * 27 24 23 49 49 H 1.08994 * 109.47295 * 307.64157 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3370 1.7770 -1.4364 5 1 1.4167 1.6739 -2.0110 6 6 3.5750 1.2314 -2.1616 7 6 3.6448 2.6572 -2.7330 8 7 2.9379 3.1163 -1.5279 9 6 2.8659 4.2803 -0.8103 10 1 2.1808 4.3610 0.0208 11 6 3.6693 5.3586 -1.1546 12 7 4.5042 5.2604 -2.1674 13 14 3.5657 6.9492 -0.1806 14 1 4.5345 6.9050 0.9440 15 1 3.8893 8.0951 -1.0680 16 1 2.1908 7.1120 0.3566 17 6 2.1389 -1.1671 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 0.0017 20 16 2.5643 -3.8511 0.0014 21 8 3.1142 -4.0367 -1.2957 22 8 3.3992 -3.7934 1.1498 23 7 1.6281 -5.1952 0.2442 24 6 0.5616 -5.5262 -0.7042 25 6 1.0267 -5.2068 -2.1264 26 6 0.2296 -7.0160 -0.5987 27 6 -0.6850 -4.7015 -0.3780 28 1 -0.3633 0.0608 -1.0259 29 1 -0.3633 -0.9188 0.4602 30 1 -0.3633 0.8579 0.5656 31 1 3.1877 1.1166 0.4294 32 1 1.6528 2.0028 0.5938 33 1 4.4014 0.9703 -1.5006 34 1 3.3561 0.4622 -2.9022 35 1 3.0691 2.7860 -3.6495 36 1 4.6604 3.0445 -2.8145 37 1 5.0654 6.0141 -2.4082 38 1 0.7592 -2.5295 0.8919 39 1 0.7584 -2.5307 -0.8881 40 1 1.7857 -5.7634 1.0144 41 1 1.9149 -5.7944 -2.3588 42 1 0.2332 -5.4526 -2.8320 43 1 1.2633 -4.1455 -2.2016 44 1 -0.1017 -7.2436 0.4145 45 1 -0.5635 -7.2624 -1.3046 46 1 1.1178 -7.6035 -0.8311 47 1 -0.4888 -3.6493 -0.5839 48 1 -1.5177 -5.0429 -0.9930 49 1 -0.9369 -4.8248 0.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565833802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:44 Heat of formation + Delta-G solvation = -65.439419 kcal Electronic energy + Delta-G solvation = -30264.568555 eV Core-core repulsion = 26162.494966 eV Total energy + Delta-G solvation = -4102.073589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.29138 -39.72260 -39.10852 -37.98432 -37.03444 -36.68007 -34.29507 -32.30155 -31.84263 -29.94700 -29.44019 -28.21929 -28.03273 -27.30979 -25.41977 -24.05342 -21.65888 -21.10110 -20.76927 -19.99369 -19.05078 -18.71495 -18.04327 -17.58565 -17.54683 -17.12937 -16.69894 -16.54794 -15.91922 -15.80865 -15.47151 -15.08006 -15.03491 -14.82231 -14.25945 -14.13598 -14.02131 -13.82479 -13.61403 -13.46136 -13.43142 -13.20812 -13.18251 -13.06834 -12.97762 -12.68870 -12.67467 -12.57414 -12.47743 -12.36587 -12.29338 -12.20792 -11.90796 -11.79359 -11.69515 -11.54327 -11.33511 -11.16764 -10.84897 -10.50201 -9.75120 -8.92652 -7.88961 -5.24828 -0.89166 1.30977 1.44703 1.48333 1.55839 1.64538 1.90347 2.46965 2.77528 3.11803 3.22684 3.31888 3.45607 3.71900 3.83839 3.88489 3.99270 4.06113 4.12440 4.16894 4.29128 4.32917 4.40140 4.41206 4.65824 4.73891 4.76410 4.80039 4.84318 4.93932 4.95072 4.98919 5.01236 5.04046 5.08825 5.19303 5.30333 5.35768 5.36437 5.50908 5.51489 5.52205 5.68699 5.93167 6.14664 6.18894 6.85651 6.88781 7.60128 8.60765 9.28271 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002508 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.686343 B =11161.099868 C =11320.595618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.592 5.592 3 C 0.122 3.878 4 C 0.139 3.861 5 H 0.064 0.936 6 C -0.142 4.142 7 C 0.143 3.857 8 N -0.628 5.628 9 C -0.223 4.223 10 H 0.093 0.907 11 C -0.073 4.073 12 N -0.956 5.956 13 Si 0.982 3.018 14 H -0.288 1.288 15 H -0.297 1.297 16 H -0.262 1.262 17 C 0.525 3.475 18 O -0.584 6.584 19 C -0.658 4.658 20 S 2.643 3.357 21 O -0.978 6.978 22 O -0.993 6.993 23 N -1.099 6.099 24 C 0.160 3.840 25 C -0.187 4.187 26 C -0.148 4.148 27 C -0.187 4.187 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.039 0.961 37 H 0.247 0.753 38 H 0.207 0.793 39 H 0.198 0.802 40 H 0.426 0.574 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.886 -26.226 4.913 33.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.323 5.323 3 C -0.002 4.002 4 C 0.032 3.968 5 H 0.082 0.918 6 C -0.180 4.180 7 C 0.017 3.983 8 N -0.354 5.354 9 C -0.351 4.351 10 H 0.110 0.890 11 C -0.266 4.266 12 N -0.605 5.605 13 Si 0.810 3.190 14 H -0.215 1.215 15 H -0.223 1.223 16 H -0.186 1.186 17 C 0.312 3.688 18 O -0.465 6.465 19 C -0.787 4.787 20 S 2.734 3.266 21 O -0.968 6.968 22 O -0.983 6.983 23 N -0.863 5.863 24 C 0.073 3.927 25 C -0.245 4.245 26 C -0.207 4.207 27 C -0.245 4.245 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.224 0.776 39 H 0.215 0.785 40 H 0.264 0.736 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.325 -25.728 4.749 31.942 hybrid contribution 0.134 1.369 0.395 1.431 sum -18.192 -24.359 5.144 30.835 Atomic orbital electron populations 1.22342 0.75931 1.05786 1.04109 1.47756 1.09084 1.04457 1.71029 1.21621 0.97218 0.83894 0.97489 1.22522 0.95383 0.84209 0.94686 0.91849 1.23491 0.98574 0.96135 0.99836 1.22124 0.96757 0.90133 0.89273 1.45904 1.52782 1.08650 1.28097 1.19329 1.17732 0.88917 1.09078 0.88978 1.25725 0.98947 1.01978 0.99910 1.70053 1.28063 1.31444 1.30976 0.85031 0.78270 0.78502 0.77223 1.21531 1.22347 1.18630 1.19885 0.86947 0.85742 0.76228 1.90871 1.15636 1.87685 1.52310 1.31308 1.19708 1.10451 1.17241 1.03762 0.74474 0.75117 0.73220 1.93593 1.76307 1.84614 1.42268 1.93525 1.65301 1.86712 1.52787 1.55582 1.51029 1.41679 1.37965 1.20527 0.86592 0.98354 0.87215 1.22687 1.02878 1.02541 0.96369 1.22066 1.02610 0.92035 1.03998 1.22724 0.96919 1.00347 1.04504 0.90596 0.86876 0.89868 0.92115 0.89655 0.91875 0.90642 0.95866 0.94241 0.94411 0.77583 0.78453 0.73632 0.92448 0.88500 0.92602 0.90529 0.89351 0.92690 0.91190 0.88907 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.34 127.77 1.32 2.11 16 2 N -0.59 -15.15 2.87 -846.77 -2.43 -17.58 16 3 C 0.12 4.34 5.46 86.38 0.47 4.81 16 4 C 0.14 5.67 4.30 41.79 0.18 5.85 16 5 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 6 C -0.14 -6.17 8.03 31.02 0.25 -5.92 16 7 C 0.14 7.34 7.52 83.27 0.63 7.96 16 8 N -0.63 -32.92 3.64 -713.39 -2.60 -35.52 16 9 C -0.22 -12.45 10.55 84.03 0.89 -11.56 16 10 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 12 N -0.96 -59.88 11.43 21.65 0.25 -59.63 16 13 Si 0.98 46.23 29.55 68.60 2.03 48.25 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 17 C 0.53 14.73 7.69 87.66 0.67 15.40 16 18 O -0.58 -23.20 15.09 2.29 0.03 -23.17 16 19 C -0.66 -10.04 3.28 71.24 0.23 -9.80 16 20 S 2.64 60.80 4.26 -56.49 -0.24 60.56 16 21 O -0.98 -29.61 14.56 -127.65 -1.86 -31.47 16 22 O -0.99 -32.25 17.73 -123.80 -2.19 -34.45 16 23 N -1.10 -13.51 5.42 -152.21 -0.82 -14.34 16 24 C 0.16 1.30 1.15 3.60 0.00 1.31 16 25 C -0.19 -2.36 7.09 71.98 0.51 -1.85 16 26 C -0.15 -0.76 8.64 71.98 0.62 -0.14 16 27 C -0.19 -0.43 8.33 71.98 0.60 0.17 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.53 6.32 -2.39 -0.02 0.51 16 30 H 0.08 1.06 7.99 -2.39 -0.02 1.04 16 31 H 0.06 2.57 6.99 -2.39 -0.02 2.56 16 32 H 0.09 2.88 7.99 -2.39 -0.02 2.86 16 33 H 0.06 3.00 7.93 -2.39 -0.02 2.99 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 2.30 6.93 -2.39 -0.02 2.28 16 37 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.21 1.10 7.37 -2.39 -0.02 1.08 16 39 H 0.20 1.50 5.51 -2.39 -0.01 1.49 16 40 H 0.43 3.89 8.67 -96.75 -0.84 3.05 16 41 H 0.06 1.01 7.70 -2.39 -0.02 0.99 16 42 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.83 5.18 -2.39 -0.01 0.82 16 44 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 45 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 0.05 4.79 -2.39 -0.01 0.04 16 48 H 0.09 -0.02 8.13 -2.38 -0.02 -0.04 16 49 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -91.45 394.70 -0.88 -92.33 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.12 Total: 10.44 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.85 Total: 4.56 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -5.61 Total: -127.07 kcal Atomic # 8 Polarization: -85.07 SS G_CDS: -4.02 Total: -89.08 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 60.80 SS G_CDS: -0.24 Total: 60.56 kcal Total: -91.45 -0.88 -92.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565833802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.893 kcal (2) G-P(sol) polarization free energy of solvation -91.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds