Wall clock time and date at job start Wed Apr 1 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 H 1.08999 * 109.87092 * 304.65316 * 3 2 1 5 5 C 1.54315 * 109.88303 * 183.47943 * 3 2 1 6 6 H 1.09009 * 110.72193 * 336.75340 * 5 3 2 7 7 N 1.46507 * 110.72162 * 99.84606 * 5 3 2 8 8 C 1.34777 * 119.99671 * 204.99882 * 7 5 3 9 9 O 1.21278 * 120.00460 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99480 * 179.97438 * 8 7 5 11 11 H 1.08995 * 109.47194 * 300.00184 * 10 8 7 12 12 C 1.52997 * 109.46912 * 60.00464 * 10 8 7 13 13 N 1.46498 * 109.46894 * 180.02562 * 10 8 7 14 14 S 1.65601 * 120.00153 * 145.00642 * 13 10 8 15 15 O 1.42100 * 104.27697 * 181.07090 * 14 13 10 16 16 O 1.42105 * 104.27181 * 308.92618 * 14 13 10 17 17 C 1.81396 * 104.45110 * 64.99366 * 14 13 10 18 18 C 1.52997 * 109.46988 * 180.02562 * 17 14 13 19 19 C 1.55155 * 102.94714 * 218.38921 * 5 3 2 20 20 C 1.54693 * 101.67456 * 35.33210 * 19 5 3 21 21 N 1.47019 * 109.88512 * 65.66884 * 3 2 1 22 22 C 1.36938 * 125.64981 * 298.32148 * 21 3 2 23 23 H 1.08000 * 120.00017 * 334.05151 * 22 21 3 24 24 C 1.38808 * 120.00345 * 154.04811 * 22 21 3 25 25 N 1.31624 * 119.99798 * 335.02185 * 24 22 21 26 26 Si 1.86796 * 120.00324 * 155.01500 * 24 22 21 27 27 H 1.48506 * 109.47057 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47443 * 240.00252 * 26 24 22 29 29 H 1.48504 * 109.47318 * 120.00304 * 26 24 22 30 30 H 1.09000 * 109.47404 * 291.71986 * 1 2 3 31 31 H 1.09003 * 109.46550 * 51.72131 * 1 2 3 32 32 H 1.08997 * 109.46806 * 171.71852 * 1 2 3 33 33 H 1.09003 * 109.47082 * 239.99588 * 2 1 3 34 34 H 1.08997 * 109.46597 * 119.99627 * 2 1 3 35 35 H 0.96994 * 119.99650 * 25.00020 * 7 5 3 36 36 H 1.08996 * 109.47117 * 299.99806 * 12 10 8 37 37 H 1.09004 * 109.47301 * 60.00062 * 12 10 8 38 38 H 1.09000 * 109.46987 * 179.97438 * 12 10 8 39 39 H 0.97000 * 120.00130 * 325.00097 * 13 10 8 40 40 H 1.08997 * 109.47395 * 300.00411 * 17 14 13 41 41 H 1.09000 * 109.46777 * 60.00677 * 17 14 13 42 42 H 1.09000 * 109.47752 * 300.00085 * 18 17 14 43 43 H 1.09005 * 109.47530 * 60.00390 * 18 17 14 44 44 H 1.09004 * 109.47207 * 180.02562 * 18 17 14 45 45 H 1.08992 * 111.00755 * 153.57506 * 19 5 3 46 46 H 1.08999 * 111.00063 * 277.39471 * 19 5 3 47 47 H 1.09002 * 110.39312 * 204.37016 * 20 19 5 48 48 H 1.09003 * 110.23772 * 82.11373 * 20 19 5 49 49 H 0.97003 * 120.00159 * 353.73081 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6140 1.9861 -0.8433 5 6 3.5807 1.4544 -0.0881 6 1 3.9949 0.5127 0.2722 7 7 4.0194 1.7200 -1.4604 8 6 5.2289 1.2942 -1.8755 9 8 5.9539 0.6908 -1.1132 10 6 5.6799 1.5670 -3.2874 11 1 4.9836 1.1047 -3.9870 12 6 5.7172 3.0774 -3.5280 13 7 7.0184 1.0066 -3.4893 14 16 7.4340 0.3636 -4.9576 15 8 8.7665 -0.0949 -4.7748 16 8 6.3811 -0.5437 -5.2534 17 6 7.3970 1.7749 -6.0967 18 6 7.7674 1.3039 -7.5044 19 6 3.9736 2.6231 0.8538 20 6 2.9017 2.5052 1.9629 21 7 1.6697 2.1038 1.2597 22 6 0.3920 2.3170 1.7036 23 1 -0.4203 2.3909 0.9957 24 6 0.1406 2.4380 3.0634 25 7 0.9578 1.8861 3.9353 26 14 -1.3571 3.3840 3.6559 27 1 -2.1098 3.9028 2.4856 28 1 -0.9203 4.5198 4.5071 29 1 -2.2322 2.4812 4.4461 30 1 -0.3634 0.3803 0.9547 31 1 -0.3632 0.6367 -0.8068 32 1 -0.3633 -1.0169 -0.1480 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.4394 2.2023 -2.0702 36 1 4.7212 3.4940 -3.3779 37 1 6.4136 3.5398 -2.8284 38 1 6.0438 3.2747 -4.5490 39 1 7.6612 1.0124 -2.7628 40 1 6.3956 2.2052 -6.1096 41 1 8.1118 2.5280 -5.7653 42 1 8.7687 0.8733 -7.4919 43 1 7.0523 0.5508 -7.8356 44 1 7.7456 2.1520 -8.1888 45 1 4.9751 2.4785 1.2590 46 1 3.8967 3.5814 0.3404 47 1 2.7601 3.4659 2.4579 48 1 3.1906 1.7433 2.6870 49 1 1.6831 1.3195 3.6291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566012366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:41 Heat of formation + Delta-G solvation = -94.699554 kcal Electronic energy + Delta-G solvation = -29860.883668 eV Core-core repulsion = 25757.541264 eV Total energy + Delta-G solvation = -4103.342404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -40.17706 -38.17089 -37.44241 -36.29912 -35.77632 -34.38820 -33.68582 -32.62098 -32.07111 -30.25275 -28.59472 -26.96600 -25.17435 -24.48546 -23.85185 -21.86833 -20.87028 -20.37291 -19.80285 -19.56074 -18.47215 -17.49481 -17.39977 -16.71490 -16.37268 -16.11659 -15.42712 -15.20357 -14.77473 -14.37791 -14.30709 -13.88915 -13.81448 -13.62408 -13.46160 -13.25304 -13.13140 -12.93143 -12.69358 -12.44930 -12.43638 -12.37883 -12.27969 -12.16610 -12.04818 -12.01890 -11.66013 -11.13373 -11.06821 -10.97240 -10.77459 -10.52643 -10.31144 -10.19584 -10.14905 -10.10228 -9.88027 -9.65681 -9.46149 -8.83968 -8.42283 -6.93742 -6.07912 -3.25327 -0.16889 2.25726 2.52607 3.10648 3.39673 3.48185 3.50856 3.63407 3.75536 4.06061 4.22799 4.35092 4.49198 4.54834 4.62720 4.64858 4.85662 5.01206 5.06603 5.11500 5.20323 5.27580 5.31589 5.39078 5.39650 5.50659 5.63318 5.65236 5.88380 5.95472 6.01259 6.12447 6.23925 6.32516 6.44807 6.56139 6.62452 6.64622 6.74515 6.90132 7.00407 7.07689 7.31652 7.50770 7.84464 8.16677 8.46832 8.99049 9.76367 10.34460 11.19930 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.002281 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.502863 B =12270.059570 C =12414.679705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.133 3.867 6 H 0.096 0.904 7 N -0.710 5.710 8 C 0.513 3.487 9 O -0.529 6.529 10 C 0.126 3.874 11 H 0.118 0.882 12 C -0.176 4.176 13 N -1.101 6.101 14 S 2.612 3.388 15 O -0.953 6.953 16 O -0.952 6.952 17 C -0.635 4.635 18 C -0.147 4.147 19 C -0.143 4.143 20 C 0.143 3.857 21 N -0.590 5.590 22 C -0.325 4.325 23 H 0.064 0.936 24 C -0.024 4.024 25 N -0.914 5.914 26 Si 1.069 2.931 27 H -0.292 1.292 28 H -0.291 1.291 29 H -0.294 1.294 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.427 0.573 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.030 0.970 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 3.700 -21.499 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.029 3.971 6 H 0.114 0.886 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.405 6.405 10 C 0.014 3.986 11 H 0.136 0.864 12 C -0.235 4.235 13 N -0.861 5.861 14 S 2.703 3.297 15 O -0.943 6.943 16 O -0.942 6.942 17 C -0.764 4.764 18 C -0.206 4.206 19 C -0.183 4.183 20 C 0.017 3.983 21 N -0.316 5.316 22 C -0.453 4.453 23 H 0.081 0.919 24 C -0.227 4.227 25 N -0.554 5.554 26 Si 0.899 3.101 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.221 1.221 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.264 0.736 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.047 0.953 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.097 2.928 -19.861 22.939 hybrid contribution 0.610 0.376 -1.434 1.603 sum 11.707 3.304 -21.295 24.524 Atomic orbital electron populations 1.21889 0.95625 0.98894 1.04162 1.21887 0.97102 0.97556 0.99743 1.21199 0.89587 0.92414 0.91892 0.94537 1.22160 0.95671 0.99367 0.79930 0.88591 1.46003 1.17574 1.57938 1.14617 1.20339 0.82016 0.79091 0.88910 1.90713 1.53829 1.40368 1.55605 1.20715 0.85206 0.95582 0.97102 0.86449 1.22432 1.04400 0.93384 1.03248 1.55401 1.20734 1.79331 1.30597 1.05053 0.74254 0.76147 0.74247 1.93621 1.37482 1.78894 1.84318 1.93624 1.57300 1.59084 1.84195 1.30653 1.11461 1.21389 1.12931 1.21512 1.02806 1.03261 0.93030 1.23146 0.99389 0.97663 0.98080 1.21504 0.85336 0.98609 0.92816 1.44492 1.01919 1.65100 1.20067 1.19639 0.83698 1.49314 0.92677 0.91853 1.25834 1.03975 1.00590 0.92317 1.70700 1.18867 1.29441 1.36349 0.83475 0.75070 0.76400 0.75177 1.21806 1.21729 1.22140 0.88992 0.94301 0.95191 0.94226 0.92576 0.76574 0.90078 0.90643 0.91118 0.73624 0.84807 0.84635 0.90896 0.90820 0.89883 0.91632 0.91609 0.93140 0.95262 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.97 37.16 0.33 -2.53 16 2 C -0.12 -2.34 5.47 -26.73 -0.15 -2.49 16 3 C 0.16 2.97 3.00 -66.96 -0.20 2.77 16 4 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 5 C 0.13 2.24 2.84 -66.10 -0.19 2.05 16 6 H 0.10 1.81 7.26 -51.92 -0.38 1.43 16 7 N -0.71 -9.04 5.08 -52.03 -0.26 -9.30 16 8 C 0.51 6.65 7.22 -10.98 -0.08 6.57 16 9 O -0.53 -9.00 15.63 5.56 0.09 -8.91 16 10 C 0.13 1.08 3.22 -69.08 -0.22 0.86 16 11 H 0.12 0.84 7.48 -51.93 -0.39 0.45 16 12 C -0.18 -0.95 9.38 37.16 0.35 -0.60 16 13 N -1.10 -9.95 5.15 -5.88 -0.03 -9.98 16 14 S 2.61 23.14 5.44 -107.50 -0.58 22.56 16 15 O -0.95 -11.63 18.08 -57.54 -1.04 -12.67 16 16 O -0.95 -11.77 17.39 -57.54 -1.00 -12.77 16 17 C -0.64 -2.80 5.94 37.16 0.22 -2.58 16 18 C -0.15 -0.66 9.92 37.16 0.37 -0.29 16 19 C -0.14 -2.50 6.76 -24.70 -0.17 -2.67 16 20 C 0.14 3.16 5.56 -2.65 -0.01 3.14 16 21 N -0.59 -13.65 2.92 -162.72 -0.48 -14.12 16 22 C -0.33 -8.39 7.23 -15.06 -0.11 -8.50 16 23 H 0.06 1.64 7.23 -52.49 -0.38 1.26 16 24 C -0.02 -0.66 5.18 -17.43 -0.09 -0.75 16 25 N -0.91 -26.59 13.06 55.49 0.72 -25.87 16 26 Si 1.07 24.49 29.99 -169.99 -5.10 19.40 16 27 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.09 2.09 5.53 -51.93 -0.29 1.80 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.27 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.93 7.79 -40.82 -0.32 3.62 16 36 H 0.08 0.36 7.56 -51.93 -0.39 -0.03 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.21 5.78 -51.93 -0.30 -0.09 16 39 H 0.43 4.07 8.17 -34.47 -0.28 3.79 16 40 H 0.13 0.33 6.77 -51.93 -0.35 -0.02 16 41 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.03 0.71 6.73 -51.93 -0.35 0.36 16 49 H 0.27 7.95 6.19 -40.82 -0.25 7.70 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -36.05 396.63 -9.60 -45.65 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.95 Total: 5.04 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.05 Total: -5.00 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.05 Total: -59.27 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.95 Total: -34.35 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.10 Total: 19.40 kcal Atomic # 16 Polarization: 23.14 SS G_CDS: -0.58 Total: 22.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.05 -9.60 -45.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566012366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.051 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds