Wall clock time and date at job start Wed Apr 1 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46502 * 109.49717 * 181.34816 * 13 12 11 16 16 C 1.34777 * 119.99655 * 154.99822 * 15 13 12 17 17 O 1.21279 * 120.00217 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99824 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47437 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47541 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47512 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47545 * 180.02562 * 21 20 19 23 23 S 1.81392 * 109.47355 * 180.02562 * 22 21 20 24 24 N 1.65600 * 104.44963 * 179.97438 * 23 22 21 25 25 O 1.42105 * 110.54068 * 291.62339 * 23 22 21 26 26 O 1.42096 * 110.54426 * 68.37093 * 23 22 21 27 27 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 28 28 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 29 29 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 30 30 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 31 31 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 32 32 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 33 33 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 34 34 H 1.08997 * 109.46143 * 178.62422 * 12 11 10 35 35 H 0.96992 * 120.00225 * 334.99899 * 15 13 12 36 36 H 1.08994 * 109.47558 * 300.00247 * 18 16 15 37 37 H 1.09005 * 109.46965 * 60.00219 * 18 16 15 38 38 H 1.09002 * 109.47109 * 300.00461 * 19 18 16 39 39 H 1.09005 * 109.46611 * 60.00312 * 19 18 16 40 40 H 1.09002 * 109.47272 * 300.00333 * 20 19 18 41 41 H 1.08997 * 109.47027 * 60.00173 * 20 19 18 42 42 H 1.09002 * 109.46803 * 300.00226 * 21 20 19 43 43 H 1.08997 * 109.47155 * 59.99857 * 21 20 19 44 44 H 1.09002 * 109.46428 * 300.00315 * 22 21 20 45 45 H 1.08995 * 109.46785 * 59.99615 * 22 21 20 46 46 H 0.97000 * 119.99383 * 150.00090 * 24 23 22 47 47 H 0.96999 * 119.99733 * 329.99259 * 24 23 22 48 48 H 1.08998 * 109.59046 * 353.41506 * 27 9 7 49 49 H 1.08998 * 109.58688 * 113.84707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8752 0.3728 16 6 5.6071 -5.1016 -0.0654 17 8 4.4521 -5.4652 0.0025 18 6 6.6541 -6.0209 -0.6395 19 6 6.0009 -7.3399 -1.0574 20 6 7.0639 -8.2735 -1.6398 21 6 6.4106 -9.5922 -2.0583 22 6 7.4737 -10.5261 -2.6401 23 16 6.6990 -12.0892 -3.1369 24 7 7.9465 -12.9946 -3.7422 25 8 6.2611 -12.8136 -1.9955 26 8 5.8399 -11.8880 -4.2508 27 6 4.2482 -2.2197 -0.2010 28 1 -0.4850 -0.8368 -0.0738 29 1 4.5577 0.3873 0.9041 30 1 3.0150 0.2936 1.7896 31 1 5.0019 -0.3775 3.1898 32 1 3.7953 -1.6762 3.0220 33 1 6.3220 -1.3817 1.3344 34 1 6.1094 -2.5275 2.6796 35 1 6.8781 -3.5845 0.3189 36 1 7.1130 -5.5508 -1.5092 37 1 7.4179 -6.2167 0.1131 38 1 5.5422 -7.8099 -0.1875 39 1 5.2368 -7.1444 -1.8100 40 1 7.5229 -7.8037 -2.5097 41 1 7.8276 -8.4688 -0.8870 42 1 5.9512 -10.0621 -1.1886 43 1 5.6470 -9.3965 -2.8112 44 1 7.9334 -10.0562 -3.5096 45 1 8.2369 -10.7216 -1.8869 46 1 7.9213 -13.9619 -3.6738 47 1 8.7022 -12.5577 -4.1651 48 1 3.6911 -2.9191 -0.8243 49 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566634653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:44 Heat of formation + Delta-G solvation = -116.347678 kcal Electronic energy + Delta-G solvation = -27979.046748 eV Core-core repulsion = 23874.765611 eV Total energy + Delta-G solvation = -4104.281137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -39.81339 -37.75812 -37.46176 -36.51640 -36.33398 -34.42542 -33.71714 -32.90663 -32.48259 -30.75065 -29.54833 -27.68459 -25.00832 -23.83536 -22.35679 -21.72985 -21.43737 -20.14043 -19.88539 -19.52989 -18.08942 -17.78665 -17.28569 -16.90050 -16.79337 -16.20921 -15.90059 -15.72286 -15.21722 -14.98104 -14.29118 -14.03334 -13.90496 -13.83569 -13.51982 -13.43826 -12.92014 -12.76969 -12.63011 -12.55496 -12.51245 -12.40876 -12.38549 -12.10284 -12.00209 -11.58471 -11.49634 -11.48036 -11.15830 -11.08181 -10.89321 -10.88080 -10.77211 -10.61353 -10.06761 -9.86299 -9.66878 -9.55398 -9.10514 -8.95472 -8.41739 -7.01682 -6.20185 -3.31893 -0.25442 2.37340 2.80194 3.17364 3.30594 3.39807 3.54051 3.70263 3.74986 3.94008 4.32083 4.43155 4.60105 4.67735 4.68421 4.80026 5.00409 5.07562 5.09564 5.16039 5.22107 5.29251 5.40263 5.40875 5.42255 5.44248 5.50755 5.55174 5.60604 5.82475 5.94278 5.94960 6.04256 6.11246 6.20372 6.30757 6.42320 6.48850 6.55245 6.63426 6.66785 6.79096 6.94620 7.68173 8.09517 8.41446 8.49529 9.11194 9.62353 10.23360 11.17844 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.001597 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.455409 B =17524.958613 C =18286.966231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.342 4.342 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.086 0.914 15 N -0.726 5.726 16 C 0.506 3.494 17 O -0.535 6.535 18 C -0.139 4.139 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.621 4.621 23 S 2.612 3.388 24 N -1.253 6.253 25 O -0.962 6.962 26 O -0.959 6.959 27 C 0.143 3.857 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.420 0.580 47 H 0.412 0.588 48 H 0.062 0.938 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.865 -20.390 -3.659 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.218 4.218 3 Si 0.902 3.098 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.471 4.471 8 H 0.083 0.917 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.018 3.982 14 H 0.104 0.896 15 N -0.377 5.377 16 C 0.292 3.708 17 O -0.411 6.411 18 C -0.179 4.179 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.751 4.751 23 S 2.704 3.296 24 N -0.925 5.925 25 O -0.952 6.952 26 O -0.949 6.949 27 C 0.016 3.984 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.249 0.751 47 H 0.238 0.762 48 H 0.080 0.920 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 23.700 -19.211 -3.442 30.702 hybrid contribution 1.761 -1.339 -0.182 2.220 sum 25.462 -20.550 -3.625 32.920 Atomic orbital electron populations 1.70890 1.06018 1.30032 1.49243 1.26267 0.96653 1.01244 0.97602 0.83705 0.74597 0.75634 0.75897 1.22178 1.22756 1.21244 1.20261 0.85408 0.95113 1.46339 0.91731 1.44275 1.07267 1.36809 1.44115 1.21432 0.97207 0.92388 0.89432 1.22003 0.97692 0.98645 0.98870 1.21668 0.98301 0.97285 0.98063 1.21604 0.89888 0.90487 0.96182 0.89558 1.46151 1.11952 1.15577 1.64019 1.20666 0.89965 0.82165 0.78049 1.90753 1.20339 1.75072 1.54918 1.21665 0.98079 0.96063 1.02116 1.21390 0.97808 0.93420 1.02225 1.21550 0.98278 0.93906 1.01121 1.21368 0.96145 0.95913 1.02044 1.30475 1.12160 1.20354 1.12090 1.04835 0.73959 0.76134 0.74695 1.53254 1.40903 1.20076 1.78260 1.93621 1.79651 1.69458 1.52437 1.93641 1.63110 1.85989 1.52115 1.21139 0.92589 0.91705 0.92986 0.92652 0.95601 0.90677 0.92201 0.91635 0.92104 0.92588 0.77253 0.89026 0.89200 0.90808 0.90642 0.91347 0.91421 0.89843 0.89773 0.84816 0.84593 0.75052 0.76170 0.91954 0.96305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.27 13.70 55.49 0.76 -28.51 16 2 C -0.02 -0.49 5.24 -17.43 -0.09 -0.58 16 3 Si 1.07 26.72 24.73 -169.99 -4.20 22.51 16 4 H -0.29 -6.82 6.57 56.52 0.37 -6.45 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.29 -6.81 6.80 56.52 0.38 -6.42 16 7 C -0.34 -10.00 9.87 -15.06 -0.15 -10.15 16 8 H 0.06 2.06 8.06 -52.49 -0.42 1.64 16 9 N -0.60 -14.80 2.73 -172.58 -0.47 -15.27 16 10 C 0.12 2.61 4.21 -3.71 -0.02 2.59 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.11 -1.69 5.36 -26.69 -0.14 -1.83 16 13 C 0.12 2.12 2.59 -68.03 -0.18 1.95 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 N -0.73 -9.50 5.08 -53.90 -0.27 -9.77 16 16 C 0.51 7.06 7.80 -10.99 -0.09 6.98 16 17 O -0.53 -10.26 15.64 5.56 0.09 -10.17 16 18 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 19 C -0.11 -1.00 4.50 -26.73 -0.12 -1.12 16 20 C -0.11 -0.64 5.21 -26.73 -0.14 -0.78 16 21 C -0.12 -0.70 5.22 -26.73 -0.14 -0.84 16 22 C -0.62 -2.00 6.17 37.16 0.23 -1.77 16 23 S 2.61 15.46 5.97 -107.50 -0.64 14.82 16 24 N -1.25 -3.09 9.36 60.35 0.57 -2.52 16 25 O -0.96 -9.64 18.10 -57.54 -1.04 -10.68 16 26 O -0.96 -9.97 18.10 -57.54 -1.04 -11.01 16 27 C 0.14 3.03 6.06 -3.93 -0.02 3.00 16 28 H 0.26 8.35 8.73 -40.82 -0.36 8.00 16 29 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 30 H 0.08 1.77 4.76 -51.93 -0.25 1.52 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 3.68 8.60 -40.82 -0.35 3.33 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 45 H 0.14 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.42 0.81 8.96 -34.46 -0.31 0.50 16 47 H 0.41 -0.19 8.96 -34.47 -0.31 -0.50 16 48 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -41.78 400.66 -9.75 -51.53 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.35 Total: -0.63 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.17 Total: -6.34 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.58 Total: -56.07 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -2.00 Total: -31.87 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -4.20 Total: 22.51 kcal Atomic # 16 Polarization: 15.46 SS G_CDS: -0.64 Total: 14.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -41.78 -9.75 -51.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566634653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.816 kcal (2) G-P(sol) polarization free energy of solvation -41.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds