Wall clock time and date at job start Wed Apr 1 2020 04:36:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86795 * 119.99791 * 2 1
4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1
5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1
6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1
7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1
9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1
10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2
11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7
12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9
13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10
14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11
15 15 N 1.46502 * 109.49717 * 181.34816 * 13 12 11
16 16 C 1.34777 * 119.99655 * 154.99822 * 15 13 12
17 17 O 1.21279 * 120.00217 * 359.97438 * 16 15 13
18 18 C 1.50697 * 119.99824 * 179.97438 * 16 15 13
19 19 C 1.53001 * 109.47437 * 179.97438 * 18 16 15
20 20 C 1.52992 * 109.47541 * 180.02562 * 19 18 16
21 21 C 1.53001 * 109.47512 * 180.02562 * 20 19 18
22 22 C 1.53003 * 109.47545 * 180.02562 * 21 20 19
23 23 S 1.81392 * 109.47355 * 180.02562 * 22 21 20
24 24 N 1.65600 * 104.44963 * 179.97438 * 23 22 21
25 25 O 1.42105 * 110.54068 * 291.62339 * 23 22 21
26 26 O 1.42096 * 110.54426 * 68.37093 * 23 22 21
27 27 C 1.46930 * 120.62663 * 210.71209 * 9 7 2
28 28 H 0.97004 * 119.99848 * 174.95695 * 1 2 3
29 29 H 1.08991 * 109.58668 * 246.15428 * 10 9 7
30 30 H 1.09001 * 109.58488 * 6.44019 * 10 9 7
31 31 H 1.08997 * 109.49935 * 174.58706 * 11 10 9
32 32 H 1.08996 * 109.49732 * 294.69282 * 11 10 9
33 33 H 1.09000 * 109.45911 * 58.65328 * 12 11 10
34 34 H 1.08997 * 109.46143 * 178.62422 * 12 11 10
35 35 H 0.96992 * 120.00225 * 334.99899 * 15 13 12
36 36 H 1.08994 * 109.47558 * 300.00247 * 18 16 15
37 37 H 1.09005 * 109.46965 * 60.00219 * 18 16 15
38 38 H 1.09002 * 109.47109 * 300.00461 * 19 18 16
39 39 H 1.09005 * 109.46611 * 60.00312 * 19 18 16
40 40 H 1.09002 * 109.47272 * 300.00333 * 20 19 18
41 41 H 1.08997 * 109.47027 * 60.00173 * 20 19 18
42 42 H 1.09002 * 109.46803 * 300.00226 * 21 20 19
43 43 H 1.08997 * 109.47155 * 59.99857 * 21 20 19
44 44 H 1.09002 * 109.46428 * 300.00315 * 22 21 20
45 45 H 1.08995 * 109.46785 * 59.99615 * 22 21 20
46 46 H 0.97000 * 119.99383 * 150.00090 * 24 23 22
47 47 H 0.96999 * 119.99733 * 329.99259 * 24 23 22
48 48 H 1.08998 * 109.59046 * 353.41506 * 27 9 7
49 49 H 1.08998 * 109.58688 * 113.84707 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 1.4001
5 1 1.4476 2.6527 -0.7000
6 1 3.5478 1.4401 -0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 1.5126 -2.1129 -0.2994
9 7 3.3259 -1.2333 0.3780
10 6 3.8407 -0.2850 1.3752
11 6 4.5322 -1.0718 2.4930
12 6 5.5991 -1.9845 1.8841
13 6 4.9365 -2.9813 0.9304
14 1 4.1958 -3.5676 1.4742
15 7 5.9544 -3.8752 0.3728
16 6 5.6071 -5.1016 -0.0654
17 8 4.4521 -5.4652 0.0025
18 6 6.6541 -6.0209 -0.6395
19 6 6.0009 -7.3399 -1.0574
20 6 7.0639 -8.2735 -1.6398
21 6 6.4106 -9.5922 -2.0583
22 6 7.4737 -10.5261 -2.6401
23 16 6.6990 -12.0892 -3.1369
24 7 7.9465 -12.9946 -3.7422
25 8 6.2611 -12.8136 -1.9955
26 8 5.8399 -11.8880 -4.2508
27 6 4.2482 -2.2197 -0.2010
28 1 -0.4850 -0.8368 -0.0738
29 1 4.5577 0.3873 0.9041
30 1 3.0150 0.2936 1.7896
31 1 5.0019 -0.3775 3.1898
32 1 3.7953 -1.6762 3.0220
33 1 6.3220 -1.3817 1.3344
34 1 6.1094 -2.5275 2.6796
35 1 6.8781 -3.5845 0.3189
36 1 7.1130 -5.5508 -1.5092
37 1 7.4179 -6.2167 0.1131
38 1 5.5422 -7.8099 -0.1875
39 1 5.2368 -7.1444 -1.8100
40 1 7.5229 -7.8037 -2.5097
41 1 7.8276 -8.4688 -0.8870
42 1 5.9512 -10.0621 -1.1886
43 1 5.6470 -9.3965 -2.8112
44 1 7.9334 -10.0562 -3.5096
45 1 8.2369 -10.7216 -1.8869
46 1 7.9213 -13.9619 -3.6738
47 1 8.7022 -12.5577 -4.1651
48 1 3.6911 -2.9191 -0.8243
49 1 4.9992 -1.7084 -0.8032
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001566634653.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:43
Heat of formation + Delta-G solvation = -153.778446 kcal
Electronic energy + Delta-G solvation = -27980.669868 eV
Core-core repulsion = 23874.765611 eV
Total energy + Delta-G solvation = -4105.904257 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.03457 -39.24650 -38.08660 -37.12715 -36.95543 -36.00127 -34.38924 -34.00315
-33.46764 -32.61314 -30.89536 -28.40599 -26.92498 -24.79364 -23.56851 -23.41437
-22.07261 -21.41597 -20.98839 -20.33395 -19.38881 -18.49486 -18.20919 -17.90158
-17.35638 -17.25925 -16.89635 -16.65027 -16.32107 -16.09099 -15.81140 -15.44868
-15.17604 -15.12496 -14.52995 -14.41566 -14.38313 -14.03056 -13.70315 -13.48911
-13.39571 -13.23584 -13.16940 -13.08004 -13.01072 -12.78712 -12.56266 -12.52529
-12.09223 -12.05039 -12.03630 -11.72104 -11.58370 -11.56674 -11.45476 -11.36827
-11.26986 -11.13963 -10.86432 -10.65002 -10.14188 -9.13619 -8.51980 -5.63751
-0.69459 1.40184 1.56386 1.70349 1.75309 2.00565 2.21284 2.52364
2.76821 3.07500 3.37875 3.41198 3.53539 3.77945 3.85922 3.88927
3.95032 4.02198 4.11534 4.17527 4.31159 4.36818 4.41790 4.52894
4.58981 4.64910 4.70274 4.72715 4.84434 4.89453 4.90587 4.93851
4.99764 5.05485 5.11414 5.12265 5.19487 5.29868 5.34806 5.38904
5.46900 5.57016 5.72328 6.19886 6.40305 6.65690 6.89069 7.38259
7.50461 8.02014 8.78072
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.022017 B = 0.001597 C = 0.001531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1271.455409 B =17524.958613 C =18286.966231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.073 4.073
3 Si 1.118 2.882
4 H -0.261 1.261
5 H -0.307 1.307
6 H -0.261 1.261
7 C -0.337 4.337
8 H 0.010 0.990
9 N -0.619 5.619
10 C 0.111 3.889
11 C -0.128 4.128
12 C -0.104 4.104
13 C 0.136 3.864
14 H 0.041 0.959
15 N -0.709 5.709
16 C 0.496 3.504
17 O -0.600 6.600
18 C -0.125 4.125
19 C -0.115 4.115
20 C -0.100 4.100
21 C -0.133 4.133
22 C -0.593 4.593
23 S 2.615 3.385
24 N -1.238 6.238
25 O -1.011 7.011
26 O -1.015 7.015
27 C 0.144 3.856
28 H 0.243 0.757
29 H 0.052 0.948
30 H 0.052 0.948
31 H 0.102 0.898
32 H 0.041 0.959
33 H 0.092 0.908
34 H 0.090 0.910
35 H 0.420 0.580
36 H 0.123 0.877
37 H 0.129 0.871
38 H 0.051 0.949
39 H 0.044 0.956
40 H 0.090 0.910
41 H 0.094 0.906
42 H 0.072 0.928
43 H 0.069 0.931
44 H 0.168 0.832
45 H 0.170 0.830
46 H 0.424 0.576
47 H 0.428 0.572
48 H 0.016 0.984
49 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.442 -18.928 -2.930 37.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.597 5.597
2 C -0.266 4.266
3 Si 0.941 3.059
4 H -0.187 1.187
5 H -0.235 1.235
6 H -0.186 1.186
7 C -0.467 4.467
8 H 0.028 0.972
9 N -0.345 5.345
10 C -0.013 4.013
11 C -0.168 4.168
12 C -0.142 4.142
13 C 0.029 3.971
14 H 0.059 0.941
15 N -0.362 5.362
16 C 0.284 3.716
17 O -0.481 6.481
18 C -0.164 4.164
19 C -0.154 4.154
20 C -0.138 4.138
21 C -0.172 4.172
22 C -0.726 4.726
23 S 2.711 3.289
24 N -0.915 5.915
25 O -1.001 7.001
26 O -1.004 7.004
27 C 0.018 3.982
28 H 0.052 0.948
29 H 0.070 0.930
30 H 0.070 0.930
31 H 0.120 0.880
32 H 0.059 0.941
33 H 0.110 0.890
34 H 0.108 0.892
35 H 0.258 0.742
36 H 0.141 0.859
37 H 0.147 0.853
38 H 0.069 0.931
39 H 0.063 0.937
40 H 0.108 0.892
41 H 0.112 0.888
42 H 0.091 0.909
43 H 0.088 0.912
44 H 0.186 0.814
45 H 0.187 0.813
46 H 0.255 0.745
47 H 0.258 0.742
48 H 0.035 0.965
49 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 30.370 -17.811 -2.714 35.312
hybrid contribution -0.300 -1.893 -0.432 1.965
sum 30.070 -19.704 -3.146 36.088
Atomic orbital electron populations
1.71028 1.07420 1.28836 1.52403 1.27794 0.96492 1.05307 0.97045
0.83134 0.74072 0.70775 0.77871 1.18653 1.23535 1.18583 1.20033
0.87896 0.93214 1.45536 0.97250 1.44347 1.05984 1.38381 1.45747
1.21632 0.97214 0.92432 0.90051 1.21943 0.97872 0.99127 0.97833
1.21634 0.97690 0.96464 0.98366 1.21122 0.90388 0.90756 0.94833
0.94075 1.45920 1.12322 1.14746 1.63170 1.21817 0.90250 0.82691
0.76805 1.90745 1.23600 1.76351 1.57375 1.21720 0.96672 0.94094
1.03948 1.21406 0.98474 0.94746 1.00734 1.21511 0.97364 0.92475
1.02484 1.21484 0.97029 0.97082 1.01653 1.30233 1.11472 1.16675
1.14269 1.04332 0.74209 0.77044 0.73296 1.52825 1.40459 1.20125
1.78053 1.93558 1.81252 1.71505 1.53766 1.93581 1.65915 1.87024
1.53862 1.21190 0.92075 0.90690 0.94284 0.94759 0.92984 0.93002
0.87981 0.94055 0.88983 0.89172 0.74203 0.85924 0.85266 0.93058
0.93684 0.89177 0.88790 0.90884 0.91194 0.81422 0.81254 0.74549
0.74188 0.96477 0.93868
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -63.75 13.70 21.65 0.30 -63.45 16
2 C -0.07 -4.48 5.24 84.86 0.44 -4.03 16
3 Si 1.12 53.48 24.73 68.60 1.70 55.18 16
4 H -0.26 -11.06 6.57 99.48 0.65 -10.41 16
5 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16
6 H -0.26 -11.31 6.80 99.48 0.68 -10.64 16
7 C -0.34 -20.83 9.87 84.03 0.83 -20.00 16
8 H 0.01 0.68 8.06 -2.91 -0.02 0.65 16
9 N -0.62 -30.87 2.73 -699.92 -1.91 -32.78 16
10 C 0.11 4.51 4.21 86.36 0.36 4.87 16
11 C -0.13 -3.97 6.08 30.67 0.19 -3.78 16
12 C -0.10 -2.57 5.36 30.62 0.16 -2.40 16
13 C 0.14 4.52 2.59 44.93 0.12 4.64 16
14 H 0.04 1.75 7.58 -2.39 -0.02 1.73 16
15 N -0.71 -16.74 5.08 -442.84 -2.25 -18.99 16
16 C 0.50 13.45 7.80 87.66 0.68 14.13 16
17 O -0.60 -24.52 15.64 -3.03 -0.05 -24.56 16
18 C -0.12 -1.75 5.70 29.85 0.17 -1.58 16
19 C -0.12 -1.99 4.50 30.59 0.14 -1.85 16
20 C -0.10 -0.83 5.21 30.59 0.16 -0.67 16
21 C -0.13 -1.43 5.22 30.60 0.16 -1.27 16
22 C -0.59 -2.02 6.17 71.98 0.44 -1.58 16
23 S 2.62 30.36 5.97 -56.49 -0.34 30.02 16
24 N -1.24 -4.34 9.36 37.02 0.35 -3.99 16
25 O -1.01 -21.10 18.10 -127.65 -2.31 -23.41 16
26 O -1.01 -22.14 18.10 -127.65 -2.31 -24.46 16
27 C 0.14 6.14 6.06 86.22 0.52 6.66 16
28 H 0.24 16.66 8.73 -92.71 -0.81 15.85 16
29 H 0.05 1.88 7.10 -2.39 -0.02 1.87 16
30 H 0.05 2.35 4.76 -2.39 -0.01 2.33 16
31 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16
32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
35 H 0.42 5.69 8.60 -92.71 -0.80 4.89 16
36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16
37 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16
38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16
39 H 0.04 1.03 8.10 -2.38 -0.02 1.01 16
40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16
41 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16
42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
44 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16
45 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16
46 H 0.42 1.24 8.96 -96.75 -0.87 0.38 16
47 H 0.43 -1.49 8.96 -96.75 -0.87 -2.36 16
48 H 0.02 0.84 7.93 -2.39 -0.02 0.82 16
49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
Total: -1.00 -103.80 400.66 -4.13 -107.93
By element:
Atomic # 1 Polarization: 7.04 SS G_CDS: -1.69 Total: 5.36 kcal
Atomic # 6 Polarization: -11.23 SS G_CDS: 4.38 Total: -6.85 kcal
Atomic # 7 Polarization: -115.70 SS G_CDS: -3.51 Total: -119.21 kcal
Atomic # 8 Polarization: -67.76 SS G_CDS: -4.67 Total: -72.43 kcal
Atomic # 14 Polarization: 53.48 SS G_CDS: 1.70 Total: 55.18 kcal
Atomic # 16 Polarization: 30.36 SS G_CDS: -0.34 Total: 30.02 kcal
Total: -103.80 -4.13 -107.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566634653.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal
(2) G-P(sol) polarization free energy of solvation -103.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds