Wall clock time and date at job start Wed Apr 1 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.08998 * 109.49471 * 301.41200 * 13 12 11 15 15 N 1.46502 * 109.49717 * 181.34816 * 13 12 11 16 16 C 1.34777 * 119.99655 * 154.99822 * 15 13 12 17 17 O 1.21279 * 120.00217 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99824 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47437 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47541 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47512 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47545 * 180.02562 * 21 20 19 23 23 S 1.81392 * 109.47355 * 180.02562 * 22 21 20 24 24 N 1.65600 * 104.44963 * 179.97438 * 23 22 21 25 25 O 1.42105 * 110.54068 * 291.62339 * 23 22 21 26 26 O 1.42096 * 110.54426 * 68.37093 * 23 22 21 27 27 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 28 28 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 29 29 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 30 30 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 31 31 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 32 32 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 33 33 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 34 34 H 1.08997 * 109.46143 * 178.62422 * 12 11 10 35 35 H 0.96992 * 120.00225 * 334.99899 * 15 13 12 36 36 H 1.08994 * 109.47558 * 300.00247 * 18 16 15 37 37 H 1.09005 * 109.46965 * 60.00219 * 18 16 15 38 38 H 1.09002 * 109.47109 * 300.00461 * 19 18 16 39 39 H 1.09005 * 109.46611 * 60.00312 * 19 18 16 40 40 H 1.09002 * 109.47272 * 300.00333 * 20 19 18 41 41 H 1.08997 * 109.47027 * 60.00173 * 20 19 18 42 42 H 1.09002 * 109.46803 * 300.00226 * 21 20 19 43 43 H 1.08997 * 109.47155 * 59.99857 * 21 20 19 44 44 H 1.09002 * 109.46428 * 300.00315 * 22 21 20 45 45 H 1.08995 * 109.46785 * 59.99615 * 22 21 20 46 46 H 0.97000 * 119.99383 * 150.00090 * 24 23 22 47 47 H 0.96999 * 119.99733 * 329.99259 * 24 23 22 48 48 H 1.08998 * 109.59046 * 353.41506 * 27 9 7 49 49 H 1.08998 * 109.58688 * 113.84707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1958 -3.5676 1.4742 15 7 5.9544 -3.8752 0.3728 16 6 5.6071 -5.1016 -0.0654 17 8 4.4521 -5.4652 0.0025 18 6 6.6541 -6.0209 -0.6395 19 6 6.0009 -7.3399 -1.0574 20 6 7.0639 -8.2735 -1.6398 21 6 6.4106 -9.5922 -2.0583 22 6 7.4737 -10.5261 -2.6401 23 16 6.6990 -12.0892 -3.1369 24 7 7.9465 -12.9946 -3.7422 25 8 6.2611 -12.8136 -1.9955 26 8 5.8399 -11.8880 -4.2508 27 6 4.2482 -2.2197 -0.2010 28 1 -0.4850 -0.8368 -0.0738 29 1 4.5577 0.3873 0.9041 30 1 3.0150 0.2936 1.7896 31 1 5.0019 -0.3775 3.1898 32 1 3.7953 -1.6762 3.0220 33 1 6.3220 -1.3817 1.3344 34 1 6.1094 -2.5275 2.6796 35 1 6.8781 -3.5845 0.3189 36 1 7.1130 -5.5508 -1.5092 37 1 7.4179 -6.2167 0.1131 38 1 5.5422 -7.8099 -0.1875 39 1 5.2368 -7.1444 -1.8100 40 1 7.5229 -7.8037 -2.5097 41 1 7.8276 -8.4688 -0.8870 42 1 5.9512 -10.0621 -1.1886 43 1 5.6470 -9.3965 -2.8112 44 1 7.9334 -10.0562 -3.5096 45 1 8.2369 -10.7216 -1.8869 46 1 7.9213 -13.9619 -3.6738 47 1 8.7022 -12.5577 -4.1651 48 1 3.6911 -2.9191 -0.8243 49 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566634653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:43 Heat of formation + Delta-G solvation = -153.778446 kcal Electronic energy + Delta-G solvation = -27980.669868 eV Core-core repulsion = 23874.765611 eV Total energy + Delta-G solvation = -4105.904257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03457 -39.24650 -38.08660 -37.12715 -36.95543 -36.00127 -34.38924 -34.00315 -33.46764 -32.61314 -30.89536 -28.40599 -26.92498 -24.79364 -23.56851 -23.41437 -22.07261 -21.41597 -20.98839 -20.33395 -19.38881 -18.49486 -18.20919 -17.90158 -17.35638 -17.25925 -16.89635 -16.65027 -16.32107 -16.09099 -15.81140 -15.44868 -15.17604 -15.12496 -14.52995 -14.41566 -14.38313 -14.03056 -13.70315 -13.48911 -13.39571 -13.23584 -13.16940 -13.08004 -13.01072 -12.78712 -12.56266 -12.52529 -12.09223 -12.05039 -12.03630 -11.72104 -11.58370 -11.56674 -11.45476 -11.36827 -11.26986 -11.13963 -10.86432 -10.65002 -10.14188 -9.13619 -8.51980 -5.63751 -0.69459 1.40184 1.56386 1.70349 1.75309 2.00565 2.21284 2.52364 2.76821 3.07500 3.37875 3.41198 3.53539 3.77945 3.85922 3.88927 3.95032 4.02198 4.11534 4.17527 4.31159 4.36818 4.41790 4.52894 4.58981 4.64910 4.70274 4.72715 4.84434 4.89453 4.90587 4.93851 4.99764 5.05485 5.11414 5.12265 5.19487 5.29868 5.34806 5.38904 5.46900 5.57016 5.72328 6.19886 6.40305 6.65690 6.89069 7.38259 7.50461 8.02014 8.78072 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.001597 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.455409 B =17524.958613 C =18286.966231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 1.118 2.882 4 H -0.261 1.261 5 H -0.307 1.307 6 H -0.261 1.261 7 C -0.337 4.337 8 H 0.010 0.990 9 N -0.619 5.619 10 C 0.111 3.889 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.136 3.864 14 H 0.041 0.959 15 N -0.709 5.709 16 C 0.496 3.504 17 O -0.600 6.600 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.100 4.100 21 C -0.133 4.133 22 C -0.593 4.593 23 S 2.615 3.385 24 N -1.238 6.238 25 O -1.011 7.011 26 O -1.015 7.015 27 C 0.144 3.856 28 H 0.243 0.757 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.420 0.580 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.424 0.576 47 H 0.428 0.572 48 H 0.016 0.984 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.442 -18.928 -2.930 37.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.266 4.266 3 Si 0.941 3.059 4 H -0.187 1.187 5 H -0.235 1.235 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.028 0.972 9 N -0.345 5.345 10 C -0.013 4.013 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.029 3.971 14 H 0.059 0.941 15 N -0.362 5.362 16 C 0.284 3.716 17 O -0.481 6.481 18 C -0.164 4.164 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.172 4.172 22 C -0.726 4.726 23 S 2.711 3.289 24 N -0.915 5.915 25 O -1.001 7.001 26 O -1.004 7.004 27 C 0.018 3.982 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.258 0.742 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.186 0.814 45 H 0.187 0.813 46 H 0.255 0.745 47 H 0.258 0.742 48 H 0.035 0.965 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 30.370 -17.811 -2.714 35.312 hybrid contribution -0.300 -1.893 -0.432 1.965 sum 30.070 -19.704 -3.146 36.088 Atomic orbital electron populations 1.71028 1.07420 1.28836 1.52403 1.27794 0.96492 1.05307 0.97045 0.83134 0.74072 0.70775 0.77871 1.18653 1.23535 1.18583 1.20033 0.87896 0.93214 1.45536 0.97250 1.44347 1.05984 1.38381 1.45747 1.21632 0.97214 0.92432 0.90051 1.21943 0.97872 0.99127 0.97833 1.21634 0.97690 0.96464 0.98366 1.21122 0.90388 0.90756 0.94833 0.94075 1.45920 1.12322 1.14746 1.63170 1.21817 0.90250 0.82691 0.76805 1.90745 1.23600 1.76351 1.57375 1.21720 0.96672 0.94094 1.03948 1.21406 0.98474 0.94746 1.00734 1.21511 0.97364 0.92475 1.02484 1.21484 0.97029 0.97082 1.01653 1.30233 1.11472 1.16675 1.14269 1.04332 0.74209 0.77044 0.73296 1.52825 1.40459 1.20125 1.78053 1.93558 1.81252 1.71505 1.53766 1.93581 1.65915 1.87024 1.53862 1.21190 0.92075 0.90690 0.94284 0.94759 0.92984 0.93002 0.87981 0.94055 0.88983 0.89172 0.74203 0.85924 0.85266 0.93058 0.93684 0.89177 0.88790 0.90884 0.91194 0.81422 0.81254 0.74549 0.74188 0.96477 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.75 13.70 21.65 0.30 -63.45 16 2 C -0.07 -4.48 5.24 84.86 0.44 -4.03 16 3 Si 1.12 53.48 24.73 68.60 1.70 55.18 16 4 H -0.26 -11.06 6.57 99.48 0.65 -10.41 16 5 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.26 -11.31 6.80 99.48 0.68 -10.64 16 7 C -0.34 -20.83 9.87 84.03 0.83 -20.00 16 8 H 0.01 0.68 8.06 -2.91 -0.02 0.65 16 9 N -0.62 -30.87 2.73 -699.92 -1.91 -32.78 16 10 C 0.11 4.51 4.21 86.36 0.36 4.87 16 11 C -0.13 -3.97 6.08 30.67 0.19 -3.78 16 12 C -0.10 -2.57 5.36 30.62 0.16 -2.40 16 13 C 0.14 4.52 2.59 44.93 0.12 4.64 16 14 H 0.04 1.75 7.58 -2.39 -0.02 1.73 16 15 N -0.71 -16.74 5.08 -442.84 -2.25 -18.99 16 16 C 0.50 13.45 7.80 87.66 0.68 14.13 16 17 O -0.60 -24.52 15.64 -3.03 -0.05 -24.56 16 18 C -0.12 -1.75 5.70 29.85 0.17 -1.58 16 19 C -0.12 -1.99 4.50 30.59 0.14 -1.85 16 20 C -0.10 -0.83 5.21 30.59 0.16 -0.67 16 21 C -0.13 -1.43 5.22 30.60 0.16 -1.27 16 22 C -0.59 -2.02 6.17 71.98 0.44 -1.58 16 23 S 2.62 30.36 5.97 -56.49 -0.34 30.02 16 24 N -1.24 -4.34 9.36 37.02 0.35 -3.99 16 25 O -1.01 -21.10 18.10 -127.65 -2.31 -23.41 16 26 O -1.01 -22.14 18.10 -127.65 -2.31 -24.46 16 27 C 0.14 6.14 6.06 86.22 0.52 6.66 16 28 H 0.24 16.66 8.73 -92.71 -0.81 15.85 16 29 H 0.05 1.88 7.10 -2.39 -0.02 1.87 16 30 H 0.05 2.35 4.76 -2.39 -0.01 2.33 16 31 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.42 5.69 8.60 -92.71 -0.80 4.89 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.04 1.03 8.10 -2.38 -0.02 1.01 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.42 1.24 8.96 -96.75 -0.87 0.38 16 47 H 0.43 -1.49 8.96 -96.75 -0.87 -2.36 16 48 H 0.02 0.84 7.93 -2.39 -0.02 0.82 16 49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -103.80 400.66 -4.13 -107.93 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -1.69 Total: 5.36 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.38 Total: -6.85 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.51 Total: -119.21 kcal Atomic # 8 Polarization: -67.76 SS G_CDS: -4.67 Total: -72.43 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 1.70 Total: 55.18 kcal Atomic # 16 Polarization: 30.36 SS G_CDS: -0.34 Total: 30.02 kcal Total: -103.80 -4.13 -107.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566634653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal (2) G-P(sol) polarization free energy of solvation -103.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds