Wall clock time and date at job start Wed Apr 1 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 C 1.53005 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47084 * 55.00047 * 4 3 2 6 6 C 1.50696 * 109.46948 * 174.99753 * 4 3 2 7 7 O 1.21279 * 120.00617 * 35.00480 * 6 4 3 8 8 N 1.34784 * 119.99921 * 215.00027 * 6 4 3 9 9 C 1.46504 * 119.99832 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46982 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.50051 * 305.00568 * 10 9 8 12 12 C 1.53043 * 109.50175 * 184.93488 * 10 9 8 13 13 C 1.53037 * 109.53972 * 178.71665 * 12 10 9 14 14 C 1.53198 * 109.33772 * 61.31896 * 13 12 10 15 15 N 1.46914 * 108.77394 * 305.37693 * 14 13 12 16 16 C 1.36937 * 120.63185 * 233.62993 * 15 14 13 17 17 H 1.08001 * 120.00188 * 151.81326 * 16 15 14 18 18 C 1.38817 * 119.99781 * 331.81534 * 16 15 14 19 19 N 1.31619 * 119.99912 * 343.07825 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 163.07729 * 18 16 15 21 21 H 1.48496 * 109.46901 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47056 * 120.00109 * 20 18 16 23 23 H 1.48501 * 109.47030 * 239.99979 * 20 18 16 24 24 C 1.46931 * 118.74071 * 53.61175 * 15 14 13 25 25 S 1.81393 * 109.47181 * 294.99945 * 4 3 2 26 26 N 1.65595 * 104.45137 * 299.99927 * 25 4 3 27 27 O 1.42105 * 110.54152 * 51.62455 * 25 4 3 28 28 O 1.42103 * 110.54171 * 188.37319 * 25 4 3 29 29 H 1.09004 * 109.46573 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47104 * 60.00605 * 1 2 3 31 31 H 1.08992 * 109.47233 * 300.00232 * 1 2 3 32 32 H 1.08997 * 109.47104 * 119.99394 * 2 1 3 33 33 H 1.08994 * 109.47744 * 240.00319 * 2 1 3 34 34 H 1.09002 * 109.47246 * 299.99668 * 3 2 1 35 35 H 1.09005 * 109.47175 * 59.99937 * 3 2 1 36 36 H 0.96998 * 120.00245 * 0.02562 * 8 6 4 37 37 H 1.08996 * 109.46877 * 300.00099 * 9 8 6 38 38 H 1.08999 * 109.47221 * 59.99969 * 9 8 6 39 39 H 1.08998 * 109.45642 * 298.71141 * 12 10 9 40 40 H 1.08997 * 109.45695 * 58.66423 * 12 10 9 41 41 H 1.08995 * 109.47285 * 301.36620 * 13 12 10 42 42 H 1.09000 * 109.49331 * 181.28539 * 13 12 10 43 43 H 1.09000 * 109.58394 * 185.58732 * 14 13 12 44 44 H 1.09000 * 109.70114 * 65.23407 * 14 13 12 45 45 H 0.96999 * 119.99996 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.58711 * 186.59849 * 24 15 14 47 47 H 1.08993 * 109.70240 * 66.24737 * 24 15 14 48 48 H 0.97000 * 120.00434 * 149.99587 * 26 25 4 49 49 H 0.97005 * 119.99839 * 329.99973 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8531 -0.8409 6 6 4.0722 2.8580 -0.1232 7 8 3.4630 3.7659 0.4017 8 7 5.1986 3.1151 -0.8174 9 6 5.6871 4.4911 -0.9374 10 6 6.9718 4.5055 -1.7682 11 1 7.6984 3.8234 -1.3266 12 6 7.5495 5.9225 -1.7911 13 6 8.8515 5.9314 -2.5953 14 6 8.5602 5.5040 -4.0373 15 7 7.8732 4.2055 -4.0159 16 6 8.3553 3.1490 -4.7415 17 1 8.1718 2.1377 -4.4101 18 6 9.0799 3.3780 -5.9032 19 7 9.0280 4.5550 -6.4900 20 14 10.1289 2.0157 -6.6335 21 1 10.0162 0.7984 -5.7906 22 1 9.6571 1.7107 -8.0082 23 1 11.5466 2.4549 -6.6828 24 6 6.6592 4.0619 -3.2008 25 16 4.1740 0.7202 1.5510 26 7 3.5553 1.7013 2.7328 27 8 3.5614 -0.5404 1.7857 28 8 5.5814 0.8827 1.6618 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5137 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 5.6857 2.3891 -1.2375 37 1 4.9304 5.1039 -1.4270 38 1 5.8924 4.8916 0.0554 39 1 6.8321 6.5996 -2.2548 40 1 7.7500 6.2494 -0.7709 41 1 9.5608 5.2363 -2.1461 42 1 9.2742 6.9361 -2.5920 43 1 9.4966 5.4130 -4.5877 44 1 7.9237 6.2462 -4.5191 45 1 9.5341 4.7149 -7.3019 46 1 6.3412 3.0192 -3.1993 47 1 5.8650 4.6854 -3.6113 48 1 3.3513 1.3368 3.6082 49 1 3.3968 2.6406 2.5496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566875397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:19 Heat of formation + Delta-G solvation = -108.462063 kcal Electronic energy + Delta-G solvation = -29862.922633 eV Core-core repulsion = 25758.983442 eV Total energy + Delta-G solvation = -4103.939191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.23388 -37.97969 -37.64873 -36.34479 -35.79734 -35.02624 -33.41491 -33.12006 -31.45127 -30.49746 -30.16980 -26.22584 -25.34836 -24.52650 -22.20502 -21.75934 -21.19058 -20.86705 -19.85403 -19.16140 -18.31799 -18.00251 -17.13586 -16.69831 -16.67733 -16.01005 -15.63611 -15.25236 -14.90935 -14.70989 -14.29484 -14.15727 -14.05937 -13.72388 -13.48418 -13.17706 -12.86244 -12.79668 -12.54267 -12.46508 -12.41851 -12.40060 -12.33548 -12.23562 -11.83302 -11.37757 -11.34899 -11.29787 -11.06498 -10.78120 -10.70986 -10.59159 -10.55112 -10.28383 -10.24711 -10.16802 -9.96159 -9.64385 -9.48110 -9.18314 -8.51659 -6.72725 -5.84060 -3.27472 -0.26471 2.20575 2.42113 2.82433 3.21910 3.33483 3.41843 3.43498 3.69255 4.09296 4.38888 4.43719 4.53387 4.74646 4.83418 4.99338 5.16584 5.22227 5.30416 5.36318 5.39261 5.49365 5.53468 5.55376 5.70289 5.74794 5.80461 5.82121 5.89870 5.91983 6.10102 6.15516 6.18012 6.29480 6.32174 6.52649 6.64097 6.70176 6.79487 6.80331 6.88954 7.21932 7.35543 7.62987 7.74223 7.82160 8.39380 9.15640 9.78876 10.35482 11.24156 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.002738 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.728450 B =10224.460606 C =10936.163335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.085 4.085 4 C -0.620 4.620 5 H 0.162 0.838 6 C 0.529 3.471 7 O -0.530 6.530 8 N -0.705 5.705 9 C 0.124 3.876 10 C -0.121 4.121 11 H 0.077 0.923 12 C -0.099 4.099 13 C -0.142 4.142 14 C 0.169 3.831 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.153 3.847 25 S 2.630 3.370 26 N -1.243 6.243 27 O -0.947 6.947 28 O -0.945 6.945 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.408 0.592 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.018 0.982 45 H 0.254 0.746 46 H 0.049 0.951 47 H 0.019 0.981 48 H 0.420 0.580 49 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 -4.445 16.422 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.123 4.123 4 C -0.730 4.730 5 H 0.179 0.821 6 C 0.312 3.688 7 O -0.408 6.408 8 N -0.355 5.355 9 C 0.001 3.999 10 C -0.142 4.142 11 H 0.096 0.904 12 C -0.137 4.137 13 C -0.181 4.181 14 C 0.043 3.957 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.026 3.974 25 S 2.717 3.283 26 N -0.919 5.919 27 O -0.936 6.936 28 O -0.934 6.934 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.251 0.749 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.346 -4.624 16.563 21.768 hybrid contribution 0.336 -0.268 -1.017 1.104 sum -13.010 -4.893 15.546 20.854 Atomic orbital electron populations 1.21686 0.94917 1.02001 1.01894 1.22249 0.97444 0.95456 1.05482 1.21280 0.86309 0.99039 1.05688 1.30731 1.09884 1.06699 1.25671 0.82079 1.19157 0.81288 0.88162 0.80213 1.90721 1.56855 1.45401 1.47788 1.46110 1.25409 1.11598 1.52367 1.21623 0.96687 0.81118 1.00512 1.22005 0.94886 0.98992 0.98303 0.90449 1.21331 0.98140 0.95070 0.99150 1.22170 0.96103 0.99814 1.00024 1.20800 0.98397 0.85895 0.90607 1.44027 1.24802 1.09972 1.52519 1.19199 1.30386 0.86896 1.02012 0.91693 1.25052 1.01814 0.96894 0.95771 1.70044 1.42911 1.22430 1.19109 0.86240 0.80340 0.81551 0.78726 1.20212 1.21723 1.21505 1.20898 0.89859 0.98080 0.88522 1.04523 0.74568 0.73895 0.75351 1.53085 1.86241 1.24595 1.28028 1.93550 1.77099 1.39882 1.83113 1.93673 1.29646 1.85803 1.84282 0.92290 0.92749 0.92534 0.87619 0.91216 0.89447 0.89479 0.75640 0.90983 0.91275 0.92457 0.93304 0.92654 0.93109 0.89553 0.96413 0.93638 0.93257 0.96336 0.74933 0.74935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.17 -1.33 5.65 -26.73 -0.15 -1.48 16 3 C -0.08 -0.68 4.22 -26.73 -0.11 -0.80 16 4 C -0.62 -5.48 2.83 -27.88 -0.08 -5.56 16 5 H 0.16 1.04 8.11 -51.92 -0.42 0.62 16 6 C 0.53 6.13 6.50 -10.98 -0.07 6.06 16 7 O -0.53 -7.03 15.26 5.56 0.08 -6.95 16 8 N -0.70 -8.60 5.33 -60.30 -0.32 -8.93 16 9 C 0.12 1.66 5.07 -4.04 -0.02 1.64 16 10 C -0.12 -1.91 2.37 -90.50 -0.21 -2.12 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 13 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 14 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 15 N -0.59 -14.18 2.99 -172.32 -0.52 -14.70 16 16 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 17 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 20 Si 0.90 21.25 29.59 -169.99 -5.03 16.23 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.15 2.96 5.60 -3.71 -0.02 2.94 16 25 S 2.63 25.47 5.46 -107.50 -0.59 24.89 16 26 N -1.24 -9.27 8.91 60.35 0.54 -8.73 16 27 O -0.95 -10.47 14.89 -57.54 -0.86 -11.32 16 28 O -0.94 -12.65 18.01 -57.54 -1.04 -13.69 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.93 4.90 -51.93 -0.25 0.67 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.65 7.63 -51.93 -0.40 0.25 16 36 H 0.41 4.58 7.67 -40.82 -0.31 4.27 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.05 0.90 7.14 -51.93 -0.37 0.53 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.42 2.24 8.96 -34.47 -0.31 1.93 16 49 H 0.42 3.11 7.54 -34.47 -0.26 2.85 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -33.77 394.36 -10.12 -43.89 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.11 Total: 5.88 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.85 Total: -7.47 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.32 Total: -57.39 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.81 Total: -31.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 25.47 SS G_CDS: -0.59 Total: 24.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.77 -10.12 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566875397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.570 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds