Wall clock time and date at job start Wed Apr 1 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 C 1.53005 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47084 * 55.00047 * 4 3 2 6 6 C 1.50696 * 109.46948 * 174.99753 * 4 3 2 7 7 O 1.21279 * 120.00617 * 35.00480 * 6 4 3 8 8 N 1.34784 * 119.99921 * 215.00027 * 6 4 3 9 9 C 1.46504 * 119.99832 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46982 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.50051 * 305.00568 * 10 9 8 12 12 C 1.53043 * 109.50175 * 184.93488 * 10 9 8 13 13 C 1.53037 * 109.53972 * 178.71665 * 12 10 9 14 14 C 1.53198 * 109.33772 * 61.31896 * 13 12 10 15 15 N 1.46914 * 108.77394 * 305.37693 * 14 13 12 16 16 C 1.36937 * 120.63185 * 233.62993 * 15 14 13 17 17 H 1.08001 * 120.00188 * 151.81326 * 16 15 14 18 18 C 1.38817 * 119.99781 * 331.81534 * 16 15 14 19 19 N 1.31619 * 119.99912 * 343.07825 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 163.07729 * 18 16 15 21 21 H 1.48496 * 109.46901 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47056 * 120.00109 * 20 18 16 23 23 H 1.48501 * 109.47030 * 239.99979 * 20 18 16 24 24 C 1.46931 * 118.74071 * 53.61175 * 15 14 13 25 25 S 1.81393 * 109.47181 * 294.99945 * 4 3 2 26 26 N 1.65595 * 104.45137 * 299.99927 * 25 4 3 27 27 O 1.42105 * 110.54152 * 51.62455 * 25 4 3 28 28 O 1.42103 * 110.54171 * 188.37319 * 25 4 3 29 29 H 1.09004 * 109.46573 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47104 * 60.00605 * 1 2 3 31 31 H 1.08992 * 109.47233 * 300.00232 * 1 2 3 32 32 H 1.08997 * 109.47104 * 119.99394 * 2 1 3 33 33 H 1.08994 * 109.47744 * 240.00319 * 2 1 3 34 34 H 1.09002 * 109.47246 * 299.99668 * 3 2 1 35 35 H 1.09005 * 109.47175 * 59.99937 * 3 2 1 36 36 H 0.96998 * 120.00245 * 0.02562 * 8 6 4 37 37 H 1.08996 * 109.46877 * 300.00099 * 9 8 6 38 38 H 1.08999 * 109.47221 * 59.99969 * 9 8 6 39 39 H 1.08998 * 109.45642 * 298.71141 * 12 10 9 40 40 H 1.08997 * 109.45695 * 58.66423 * 12 10 9 41 41 H 1.08995 * 109.47285 * 301.36620 * 13 12 10 42 42 H 1.09000 * 109.49331 * 181.28539 * 13 12 10 43 43 H 1.09000 * 109.58394 * 185.58732 * 14 13 12 44 44 H 1.09000 * 109.70114 * 65.23407 * 14 13 12 45 45 H 0.96999 * 119.99996 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.58711 * 186.59849 * 24 15 14 47 47 H 1.08993 * 109.70240 * 66.24737 * 24 15 14 48 48 H 0.97000 * 120.00434 * 149.99587 * 26 25 4 49 49 H 0.97005 * 119.99839 * 329.99973 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8531 -0.8409 6 6 4.0722 2.8580 -0.1232 7 8 3.4630 3.7659 0.4017 8 7 5.1986 3.1151 -0.8174 9 6 5.6871 4.4911 -0.9374 10 6 6.9718 4.5055 -1.7682 11 1 7.6984 3.8234 -1.3266 12 6 7.5495 5.9225 -1.7911 13 6 8.8515 5.9314 -2.5953 14 6 8.5602 5.5040 -4.0373 15 7 7.8732 4.2055 -4.0159 16 6 8.3553 3.1490 -4.7415 17 1 8.1718 2.1377 -4.4101 18 6 9.0799 3.3780 -5.9032 19 7 9.0280 4.5550 -6.4900 20 14 10.1289 2.0157 -6.6335 21 1 10.0162 0.7984 -5.7906 22 1 9.6571 1.7107 -8.0082 23 1 11.5466 2.4549 -6.6828 24 6 6.6592 4.0619 -3.2008 25 16 4.1740 0.7202 1.5510 26 7 3.5553 1.7013 2.7328 27 8 3.5614 -0.5404 1.7857 28 8 5.5814 0.8827 1.6618 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5137 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 5.6857 2.3891 -1.2375 37 1 4.9304 5.1039 -1.4270 38 1 5.8924 4.8916 0.0554 39 1 6.8321 6.5996 -2.2548 40 1 7.7500 6.2494 -0.7709 41 1 9.5608 5.2363 -2.1461 42 1 9.2742 6.9361 -2.5920 43 1 9.4966 5.4130 -4.5877 44 1 7.9237 6.2462 -4.5191 45 1 9.5341 4.7149 -7.3019 46 1 6.3412 3.0192 -3.1993 47 1 5.8650 4.6854 -3.6113 48 1 3.3513 1.3368 3.6082 49 1 3.3968 2.6406 2.5496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566875397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:18 Heat of formation + Delta-G solvation = -134.399612 kcal Electronic energy + Delta-G solvation = -29864.047370 eV Core-core repulsion = 25758.983442 eV Total energy + Delta-G solvation = -4105.063928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18940 -39.42852 -38.49086 -37.21019 -36.62917 -36.19923 -34.74009 -34.05199 -32.47499 -32.27951 -31.34036 -27.38150 -27.12336 -25.46423 -23.83452 -22.62256 -22.38587 -21.86819 -20.77988 -20.48620 -19.03911 -18.94240 -18.55730 -17.89128 -17.50481 -16.89728 -16.84792 -16.52386 -16.21157 -15.75359 -15.54597 -15.25694 -15.02893 -15.01968 -14.74386 -14.51418 -14.02562 -13.90119 -13.75365 -13.53204 -13.52028 -13.33448 -13.29519 -13.15855 -13.01252 -12.90173 -12.54421 -12.46874 -12.25245 -12.00709 -11.95702 -11.93066 -11.82168 -11.58168 -11.45788 -11.34821 -11.22159 -11.09901 -10.94994 -10.54472 -10.19155 -8.67605 -7.87409 -5.33140 -1.04071 1.31679 1.45501 1.48324 1.57907 1.65180 1.97471 2.46856 2.50508 2.93008 3.27630 3.33134 3.59576 3.62088 3.87957 3.97829 4.01779 4.06428 4.13645 4.23156 4.41534 4.55858 4.57872 4.61324 4.72468 4.76314 4.87616 4.89891 4.91116 4.96603 5.00345 5.11194 5.13097 5.19455 5.26008 5.31479 5.34753 5.35550 5.44483 5.51188 5.57524 5.67139 5.79260 6.26229 6.27836 6.39327 6.89799 7.14982 7.86540 8.38006 9.18754 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013256 B = 0.002738 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.728450 B =10224.460606 C =10936.163335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.171 4.171 3 C -0.084 4.084 4 C -0.612 4.612 5 H 0.186 0.814 6 C 0.529 3.471 7 O -0.546 6.546 8 N -0.709 5.709 9 C 0.132 3.868 10 C -0.106 4.106 11 H 0.074 0.926 12 C -0.096 4.096 13 C -0.131 4.131 14 C 0.172 3.828 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.070 0.930 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.151 3.849 25 S 2.644 3.356 26 N -1.235 6.235 27 O -0.961 6.961 28 O -0.983 6.983 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.049 0.951 44 H -0.006 1.006 45 H 0.249 0.751 46 H 0.056 0.944 47 H 0.010 0.990 48 H 0.430 0.570 49 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -5.033 18.060 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.208 4.208 3 C -0.123 4.123 4 C -0.722 4.722 5 H 0.203 0.797 6 C 0.312 3.688 7 O -0.424 6.424 8 N -0.360 5.360 9 C 0.009 3.991 10 C -0.127 4.127 11 H 0.093 0.907 12 C -0.134 4.134 13 C -0.170 4.170 14 C 0.047 3.953 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.025 3.975 25 S 2.732 3.268 26 N -0.914 5.914 27 O -0.951 6.951 28 O -0.972 6.972 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.012 0.988 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.305 -5.237 18.256 23.777 hybrid contribution 0.542 -0.061 -1.522 1.617 sum -13.763 -5.298 16.734 22.305 Atomic orbital electron populations 1.21718 0.94292 1.02428 1.02326 1.22258 0.98077 0.95128 1.05351 1.21332 0.85511 0.99359 1.06085 1.30702 1.10451 1.05159 1.25930 0.79713 1.19451 0.80775 0.88987 0.79556 1.90717 1.57173 1.46232 1.48307 1.46126 1.25804 1.11314 1.52733 1.21445 0.95226 0.81923 1.00532 1.21775 0.96115 0.98887 0.95901 0.90728 1.21329 0.96538 0.95102 1.00435 1.22003 0.97698 1.00527 0.96792 1.20629 0.96078 0.85363 0.93246 1.44298 1.26542 1.09560 1.52893 1.19567 1.29783 0.87877 1.01888 0.91241 1.25785 1.03379 0.98923 0.96562 1.70195 1.44067 1.24336 1.19530 0.85260 0.78288 0.79480 0.77739 1.18882 1.22078 1.21906 1.21051 0.87905 0.98622 0.89908 1.03884 0.73673 0.73658 0.75544 1.52862 1.85835 1.24468 1.28222 1.93539 1.77068 1.40998 1.83470 1.93634 1.32175 1.86393 1.85028 0.91919 0.92454 0.92025 0.88414 0.90699 0.89372 0.88831 0.75122 0.91148 0.89978 0.92287 0.90026 0.93050 0.91232 0.93214 0.98763 0.94215 0.92520 0.97177 0.73713 0.74582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.17 -2.36 5.65 30.59 0.17 -2.19 16 3 C -0.08 -1.19 4.22 30.60 0.13 -1.06 16 4 C -0.61 -9.56 2.83 29.85 0.08 -9.47 16 5 H 0.19 1.95 8.11 -2.39 -0.02 1.93 16 6 C 0.53 11.10 6.50 87.65 0.57 11.67 16 7 O -0.55 -13.26 15.26 -3.03 -0.05 -13.31 16 8 N -0.71 -15.79 5.33 -463.06 -2.47 -18.26 16 9 C 0.13 3.21 5.07 86.38 0.44 3.65 16 10 C -0.11 -3.14 2.37 -10.72 -0.03 -3.16 16 11 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 13 C -0.13 -4.66 6.08 30.67 0.19 -4.48 16 14 C 0.17 8.14 5.30 86.37 0.46 8.60 16 15 N -0.61 -29.46 2.99 -699.10 -2.09 -31.55 16 16 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 17 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 18 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 19 N -0.94 -54.90 11.20 21.65 0.24 -54.65 16 20 Si 0.96 44.24 29.59 68.60 2.03 46.26 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.15 5.71 5.60 86.36 0.48 6.20 16 25 S 2.64 47.28 5.46 -56.49 -0.31 46.98 16 26 N -1.23 -16.33 8.91 37.02 0.33 -16.00 16 27 O -0.96 -19.95 14.89 -127.65 -1.90 -21.85 16 28 O -0.98 -25.21 18.01 -127.65 -2.30 -27.50 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.55 4.90 -2.39 -0.01 1.54 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.19 7.63 -2.38 -0.02 1.17 16 36 H 0.41 8.44 7.67 -92.71 -0.71 7.73 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 2.69 6.06 -2.39 -0.01 2.68 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.06 2.02 7.14 -2.39 -0.02 2.00 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.43 3.88 8.96 -96.75 -0.87 3.02 16 49 H 0.42 5.47 7.54 -96.74 -0.73 4.74 16 Total: -1.00 -73.03 394.36 -3.26 -76.29 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -1.33 Total: 23.10 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.59 Total: -9.49 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -3.99 Total: -120.47 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -4.25 Total: -62.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.31 Total: 46.98 kcal Total: -73.03 -3.26 -76.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566875397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.111 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds