Wall clock time and date at job start Wed Apr 1 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 C 1.53009 * 109.46940 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.47005 * 179.97438 * 4 3 2 6 6 O 1.42097 * 110.54285 * 68.37559 * 5 4 3 7 7 O 1.42104 * 110.54448 * 291.62466 * 5 4 3 8 8 N 1.65601 * 104.44877 * 179.97438 * 5 4 3 9 9 C 1.46496 * 120.00122 * 64.99634 * 8 5 4 10 10 C 1.50703 * 109.47316 * 164.99865 * 9 8 5 11 11 O 1.21283 * 119.99735 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00330 * 180.02562 * 10 9 8 13 13 C 1.47024 * 125.64363 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.26681 * 178.89761 * 13 12 10 15 15 C 1.55159 * 102.94333 * 337.80338 * 14 13 12 16 16 H 1.08996 * 111.00708 * 277.39464 * 15 14 13 17 17 C 1.53004 * 111.00328 * 153.57938 * 15 14 13 18 18 N 1.46499 * 109.47198 * 66.45684 * 17 15 14 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.47419 * 125.65001 * 179.97438 * 12 10 9 28 28 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47505 * 300.00077 * 1 2 3 30 30 H 1.08997 * 109.47038 * 60.00414 * 1 2 3 31 31 H 1.08996 * 109.47099 * 239.99350 * 2 1 3 32 32 H 1.09009 * 109.47044 * 119.99917 * 2 1 3 33 33 H 1.08998 * 109.47685 * 60.00247 * 3 2 1 34 34 H 1.09001 * 109.47325 * 299.99722 * 3 2 1 35 35 H 1.08996 * 109.47178 * 59.99388 * 4 3 2 36 36 H 1.09001 * 109.46877 * 299.99987 * 4 3 2 37 37 H 0.97001 * 119.99948 * 244.99758 * 8 5 4 38 38 H 1.09011 * 109.46944 * 45.00510 * 9 8 5 39 39 H 1.08997 * 109.47646 * 285.00339 * 9 8 5 40 40 H 1.09003 * 109.88406 * 59.48039 * 13 12 10 41 41 H 1.08996 * 109.88468 * 298.31126 * 13 12 10 42 42 H 1.09004 * 110.71897 * 219.44651 * 14 13 12 43 43 H 1.08996 * 110.72252 * 96.17539 * 14 13 12 44 44 H 1.09009 * 109.46730 * 306.45471 * 17 15 14 45 45 H 1.08998 * 109.46846 * 186.46016 * 17 15 14 46 46 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 47 47 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.36514 * 85.33365 * 27 12 10 49 49 H 1.08998 * 110.36722 * 323.01563 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8791 3.7866 1.2355 7 8 3.8781 3.7859 -1.2385 8 7 5.8243 3.0077 -0.0013 9 6 6.5071 2.4089 -1.1509 10 6 7.9798 2.7206 -1.0788 11 8 8.4161 3.3779 -0.1577 12 7 8.8119 2.2691 -2.0380 13 6 8.4186 1.4659 -3.2050 14 6 9.6939 1.2091 -4.0352 15 6 10.6362 2.3583 -3.5892 16 1 10.4177 3.2766 -4.1343 17 6 12.1040 1.9604 -3.7571 18 7 12.4079 1.8050 -5.1818 19 6 13.6682 1.4442 -5.5776 20 1 14.4393 1.2785 -4.8397 21 6 13.9547 1.2913 -6.9272 22 7 13.0151 1.4936 -7.8264 23 14 15.6741 0.7998 -7.4672 24 1 16.5399 0.6344 -6.2721 25 1 15.6110 -0.4824 -8.2135 26 1 16.2381 1.8564 -8.3452 27 6 10.2670 2.4995 -2.0914 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9285 0.8891 37 1 6.3386 3.3193 0.7598 38 1 6.0937 2.8183 -2.0727 39 1 6.3633 1.3285 -1.1366 40 1 7.6906 2.0135 -3.8036 41 1 7.9933 0.5178 -2.8761 42 1 9.4801 1.2779 -5.1018 43 1 10.1255 0.2390 -3.7891 44 1 12.2860 1.0173 -3.2417 45 1 12.7415 2.7356 -3.3320 46 1 11.7153 1.9534 -5.8445 47 1 13.2155 1.3871 -8.7695 48 1 10.7918 1.7500 -1.4990 49 1 10.5057 3.5014 -1.7346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567152078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:06 Heat of formation + Delta-G solvation = -108.564502 kcal Electronic energy + Delta-G solvation = -28076.902096 eV Core-core repulsion = 23972.958462 eV Total energy + Delta-G solvation = -4103.943633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.29216 -37.96936 -37.49377 -36.44639 -36.26577 -35.08239 -34.77856 -32.37241 -31.06268 -30.37566 -29.32179 -27.61005 -25.08377 -24.92487 -23.09921 -22.46935 -21.89305 -20.12512 -19.91156 -19.60623 -18.28463 -17.26085 -17.14615 -16.89538 -16.60359 -16.51058 -16.04581 -15.69525 -15.14300 -14.57992 -14.49600 -14.28775 -13.99653 -13.90449 -13.65741 -13.43528 -13.39917 -13.13914 -12.84366 -12.57954 -12.54089 -12.49015 -12.40198 -12.37604 -12.29665 -12.15772 -11.84946 -11.73069 -11.25612 -11.25039 -11.00287 -10.91755 -10.73528 -10.59160 -10.45648 -10.24145 -10.05563 -9.94516 -9.74731 -8.93437 -8.80580 -6.98088 -5.82112 -3.10875 -0.22269 2.17679 2.33122 2.79602 3.32599 3.40150 3.46330 3.48217 3.71305 3.92133 4.06723 4.19782 4.35356 4.51053 4.57582 4.62273 4.65097 4.71613 4.80855 4.83829 4.90670 5.00069 5.04585 5.12297 5.20573 5.21338 5.29647 5.36690 5.50360 5.50628 5.55436 5.58662 5.72633 5.79292 5.92381 5.95165 6.05283 6.07896 6.31931 6.34710 6.55285 6.65469 6.77153 7.30995 7.66200 7.86325 8.36808 9.48510 10.04829 10.39653 11.40778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001709 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.469062 B =16378.367983 C =17186.970563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.631 4.631 5 S 2.613 3.387 6 O -0.952 6.952 7 O -0.952 6.952 8 N -1.109 6.109 9 C 0.099 3.901 10 C 0.527 3.473 11 O -0.536 6.536 12 N -0.613 5.613 13 C 0.092 3.908 14 C -0.120 4.120 15 C -0.106 4.106 16 H 0.086 0.914 17 C 0.164 3.836 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.113 3.887 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.428 0.572 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.073 0.927 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.322 -4.121 16.149 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.760 4.760 5 S 2.705 3.295 6 O -0.942 6.942 7 O -0.942 6.942 8 N -0.872 5.872 9 C -0.031 4.031 10 C 0.313 3.687 11 O -0.413 6.413 12 N -0.347 5.347 13 C -0.031 4.031 14 C -0.158 4.158 15 C -0.126 4.126 16 H 0.104 0.896 17 C 0.036 3.964 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.010 4.010 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.266 0.734 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.523 -3.029 16.558 29.744 hybrid contribution 1.172 -0.943 -0.420 1.562 sum -23.350 -3.972 16.138 28.661 Atomic orbital electron populations 1.21817 0.95321 1.02131 1.02247 1.21479 0.96229 0.95079 1.02731 1.21391 0.89942 1.00128 1.03899 1.30657 1.07034 1.26306 1.12016 1.04977 0.72720 0.77282 0.74497 1.93625 1.82753 1.72842 1.45014 1.93621 1.83125 1.71920 1.45518 1.55411 1.25908 1.78004 1.27841 1.21082 0.91919 0.99352 0.90788 1.19915 0.87550 0.79630 0.81610 1.90710 1.77280 1.39539 1.33739 1.48501 1.09131 1.52858 1.24184 1.22285 0.99185 0.94856 0.86765 1.22644 0.93102 0.99698 1.00377 1.22584 0.97158 0.99165 0.93677 0.89601 1.20546 0.90191 0.97478 0.88168 1.42300 1.11177 1.83651 1.00381 1.19273 0.88148 1.38459 0.91254 0.91089 1.24737 0.97795 1.02586 0.95813 1.69665 1.31987 1.56099 1.00417 0.86114 0.83975 0.77746 0.78322 1.20547 1.21875 1.21849 1.22313 0.78927 1.02265 0.97445 0.92318 0.92444 0.92362 0.91385 0.91488 0.90181 0.90091 0.84802 0.84580 0.73383 0.87064 0.88703 0.90951 0.91180 0.89233 0.90045 0.95969 0.95959 0.78222 0.93542 0.90912 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.48 5.93 -26.73 -0.16 -0.64 16 3 C -0.11 -0.56 5.22 -26.73 -0.14 -0.70 16 4 C -0.63 -2.66 6.07 37.16 0.23 -2.43 16 5 S 2.61 21.20 5.46 -107.50 -0.59 20.61 16 6 O -0.95 -10.93 18.08 -57.54 -1.04 -11.97 16 7 O -0.95 -10.79 17.50 -57.54 -1.01 -11.79 16 8 N -1.11 -9.26 5.82 -11.65 -0.07 -9.33 16 9 C 0.10 0.77 5.80 -5.19 -0.03 0.74 16 10 C 0.53 6.18 7.92 -10.98 -0.09 6.09 16 11 O -0.54 -8.16 15.98 5.56 0.09 -8.07 16 12 N -0.61 -6.98 3.33 -170.52 -0.57 -7.54 16 13 C 0.09 0.85 6.49 -3.06 -0.02 0.83 16 14 C -0.12 -1.48 6.13 -24.90 -0.15 -1.63 16 15 C -0.11 -1.53 3.10 -88.47 -0.27 -1.80 16 16 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.16 3.03 5.71 -4.04 -0.02 3.01 16 18 N -0.73 -17.42 5.45 -59.90 -0.33 -17.75 16 19 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.11 1.46 6.38 -2.53 -0.02 1.44 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.43 3.96 7.66 -34.47 -0.26 3.69 16 38 H 0.11 0.76 7.70 -51.92 -0.40 0.37 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.04 8.01 -51.93 -0.42 0.63 16 44 H 0.02 0.41 8.11 -51.92 -0.42 -0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.38 9.54 7.53 -40.82 -0.31 9.23 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 49 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 LS Contribution 413.06 15.07 6.22 6.22 Total: -1.00 -36.74 413.06 -10.67 -47.41 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.53 Total: 4.43 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.55 Total: -2.48 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.24 Total: -61.24 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.96 Total: -31.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 21.20 SS G_CDS: -0.59 Total: 20.61 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.74 -10.67 -47.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567152078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.158 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds