Wall clock time and date at job start Wed Apr 1 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09005 * 109.52083 * 54.91170 * 3 2 1 5 5 C 1.53193 * 109.49518 * 294.83885 * 3 2 1 6 6 N 1.46928 * 108.77407 * 185.41026 * 5 3 2 7 7 C 1.34774 * 120.63102 * 233.62875 * 6 5 3 8 8 O 1.21276 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99811 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.46933 * 179.97438 * 9 7 6 11 11 C 1.46496 * 120.00502 * 274.99706 * 10 9 7 12 12 S 1.65604 * 119.99868 * 95.00236 * 10 9 7 13 13 C 1.81397 * 104.45212 * 89.99967 * 12 10 9 14 14 O 1.42104 * 104.27748 * 206.07327 * 12 10 9 15 15 O 1.42101 * 104.27415 * 333.92600 * 12 10 9 16 16 C 1.46921 * 118.73721 * 53.60956 * 6 5 3 17 17 C 1.53191 * 108.77509 * 306.39006 * 16 6 5 18 18 C 1.53033 * 109.31515 * 54.63639 * 17 16 6 19 19 H 1.08999 * 109.45340 * 178.61944 * 18 17 16 20 20 N 1.46500 * 109.46114 * 58.65337 * 18 17 16 21 21 C 1.36943 * 119.99878 * 84.93157 * 20 18 17 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 H 1.08998 * 109.46886 * 60.00422 * 1 2 3 30 30 H 1.09004 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47428 * 300.00277 * 1 2 3 32 32 H 1.09003 * 109.47395 * 240.00259 * 2 1 3 33 33 H 1.08999 * 109.47265 * 119.99961 * 2 1 3 34 34 H 1.08995 * 109.58798 * 305.19841 * 5 3 2 35 35 H 1.09003 * 109.58810 * 65.62449 * 5 3 2 36 36 H 1.08996 * 109.47381 * 299.99735 * 9 7 6 37 37 H 1.08999 * 109.47275 * 60.00321 * 9 7 6 38 38 H 1.09011 * 109.46694 * 89.99631 * 11 10 9 39 39 H 1.08990 * 109.47640 * 209.99838 * 11 10 9 40 40 H 1.09002 * 109.47027 * 330.00917 * 11 10 9 41 41 H 1.08998 * 109.47082 * 59.99652 * 13 12 10 42 42 H 1.09002 * 109.47150 * 180.02562 * 13 12 10 43 43 H 1.09006 * 109.46813 * 299.99848 * 13 12 10 44 44 H 1.08995 * 109.59159 * 66.17573 * 16 6 5 45 45 H 1.09001 * 109.58701 * 186.46124 * 16 6 5 46 46 H 1.08998 * 109.49826 * 294.68455 * 17 16 6 47 47 H 1.09007 * 109.49928 * 174.58679 * 17 16 6 48 48 H 0.97000 * 120.00415 * 264.93105 * 20 18 17 49 49 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5673 8 8 0.2896 4.4406 -1.7318 9 6 2.1227 5.9217 -1.6063 10 7 1.0934 6.9340 -1.8552 11 6 0.6840 7.2404 -3.2280 12 16 0.3926 7.7321 -0.5846 13 6 1.4424 9.1895 -0.3310 14 8 -0.8849 8.1168 -1.0741 15 8 0.5179 6.8311 0.5071 16 6 3.6952 3.5888 -1.1499 17 6 4.0736 2.8882 0.1588 18 6 3.5652 1.4452 0.1258 19 1 3.8546 0.9372 1.0457 20 7 4.1507 0.7476 -1.0218 21 6 5.3886 0.1719 -0.9144 22 1 5.9330 0.2318 0.0164 23 6 5.9431 -0.4895 -2.0015 24 7 5.2794 -0.5629 -3.1357 25 14 7.6314 -1.2753 -1.8548 26 1 7.6075 -2.3035 -0.7835 27 1 8.6349 -0.2335 -1.5187 28 1 7.9943 -1.9133 -3.1457 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9965 1.5377 -2.1549 35 1 0.5532 2.2161 -1.3586 36 1 2.6079 6.1236 -0.6514 37 1 2.8641 5.9540 -2.4046 38 1 -0.1438 6.5912 -3.5138 39 1 0.3671 8.2814 -3.2890 40 1 1.5241 7.0760 -3.9029 41 1 1.4493 9.7945 -1.2376 42 1 1.0505 9.7799 0.4973 43 1 2.4585 8.8695 -0.1000 44 1 4.2209 3.1190 -1.9810 45 1 3.9673 4.6429 -1.0944 46 1 3.6192 3.4148 0.9980 47 1 5.1577 2.8895 0.2719 48 1 3.6616 0.6935 -1.8577 49 1 4.4025 -0.1551 -3.2118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569338008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:31 Heat of formation + Delta-G solvation = -83.922109 kcal Electronic energy + Delta-G solvation = -30751.815724 eV Core-core repulsion = 26648.940665 eV Total energy + Delta-G solvation = -4102.875059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.18260 -38.11705 -37.33488 -36.16689 -35.85160 -34.54582 -33.95043 -31.79713 -29.88093 -29.73758 -29.12944 -27.98573 -25.75150 -24.32602 -23.77363 -23.42310 -20.90500 -20.07484 -19.02123 -18.43131 -17.93001 -17.42287 -17.24469 -16.57242 -16.37865 -15.64219 -15.33558 -14.94187 -14.66356 -14.46605 -14.05461 -13.75328 -13.68619 -13.66903 -13.55425 -13.34951 -13.28320 -13.06357 -12.95484 -12.72408 -12.37033 -12.26358 -12.25171 -11.90280 -11.80881 -11.70515 -11.50734 -11.28232 -11.18585 -10.96511 -10.72604 -10.57386 -10.31456 -10.22240 -10.11880 -9.99137 -9.85552 -9.17219 -9.07364 -8.92881 -8.27641 -7.05623 -6.12062 -3.12333 -0.06726 2.29515 2.77023 3.21149 3.49005 3.51837 3.68613 3.69500 3.82758 4.22070 4.45994 4.55615 4.58618 4.64443 4.91380 5.02976 5.08989 5.21375 5.23047 5.27897 5.29126 5.40736 5.46546 5.57832 5.60472 5.65753 5.72003 5.73098 5.76597 5.86590 5.97056 6.08573 6.10613 6.14905 6.29544 6.33270 6.36098 6.51363 6.57988 6.62759 6.71794 6.85653 6.95078 7.65792 7.79031 8.35550 8.72621 9.19486 10.05973 10.21828 11.35565 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.003000 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.994310 B = 9329.883448 C =10083.802643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.602 5.602 7 C 0.498 3.502 8 O -0.538 6.538 9 C 0.107 3.893 10 N -0.985 5.985 11 C 0.096 3.904 12 S 2.609 3.391 13 C -0.677 4.677 14 O -0.950 6.950 15 O -0.945 6.945 16 C 0.113 3.887 17 C -0.151 4.151 18 C 0.185 3.815 19 H 0.052 0.948 20 N -0.730 5.730 21 C -0.327 4.327 22 H 0.063 0.937 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.077 2.923 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.075 0.925 48 H 0.367 0.633 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 18.609 3.973 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.336 5.336 7 C 0.283 3.717 8 O -0.415 6.415 9 C -0.022 4.022 10 N -0.822 5.822 11 C -0.049 4.049 12 S 2.701 3.299 13 C -0.826 4.826 14 O -0.940 6.940 15 O -0.935 6.935 16 C -0.009 4.009 17 C -0.192 4.192 18 C 0.074 3.926 19 H 0.070 0.930 20 N -0.373 5.373 21 C -0.458 4.458 22 H 0.081 0.919 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.909 3.091 26 H -0.224 1.224 27 H -0.224 1.224 28 H -0.212 1.212 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.201 0.799 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.670 17.419 3.685 18.685 hybrid contribution -0.463 1.271 0.519 1.448 sum -6.132 18.689 4.204 20.114 Atomic orbital electron populations 1.21854 0.96661 1.01064 1.01502 1.21398 0.94415 0.95701 1.03118 1.21788 0.97367 0.96155 0.97291 0.91239 1.21645 0.98977 0.81615 0.97937 1.48145 1.08623 1.06587 1.70198 1.20944 0.87432 0.86381 0.76933 1.90665 1.14713 1.86299 1.49828 1.21195 0.90224 0.86388 1.04402 1.57124 1.54755 1.49589 1.20725 1.21492 1.01254 1.00916 0.81208 1.05093 0.75197 0.76090 0.73519 1.30626 1.17735 1.22571 1.11640 1.93606 1.36319 1.84550 1.79518 1.93640 1.86580 1.60229 1.53037 1.21731 0.79226 0.99839 1.00120 1.22516 1.01874 0.99280 0.95539 1.20142 0.89567 0.90547 0.92318 0.93035 1.42484 1.19379 1.65191 1.10294 1.20017 0.94652 1.31557 0.99621 0.91863 1.25673 1.05554 1.00160 0.92759 1.70902 1.14444 1.47699 1.25866 0.83270 0.74641 0.75881 0.75353 1.22397 1.22400 1.21190 0.92804 0.93119 0.93208 0.90977 0.91967 0.91342 0.89455 0.87285 0.87177 0.91592 0.91076 0.90971 0.85408 0.85418 0.85312 0.89899 0.91342 0.92929 0.90647 0.79879 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.11 -1.77 2.14 -90.50 -0.19 -1.96 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 5 C 0.12 2.05 5.03 -3.71 -0.02 2.03 16 6 N -0.60 -9.48 2.97 -172.77 -0.51 -10.00 16 7 C 0.50 7.76 7.76 -10.99 -0.09 7.68 16 8 O -0.54 -10.27 15.83 5.56 0.09 -10.18 16 9 C 0.11 1.13 4.10 -5.19 -0.02 1.11 16 10 N -0.99 -10.02 2.61 -123.06 -0.32 -10.34 16 11 C 0.10 0.83 10.22 59.84 0.61 1.44 16 12 S 2.61 27.22 5.96 -107.50 -0.64 26.58 16 13 C -0.68 -3.45 10.99 101.05 1.11 -2.33 16 14 O -0.95 -13.00 17.09 -57.54 -0.98 -13.98 16 15 O -0.94 -13.57 16.99 -57.54 -0.98 -14.55 16 16 C 0.11 1.66 6.08 -3.71 -0.02 1.64 16 17 C -0.15 -2.42 5.78 -26.62 -0.15 -2.57 16 18 C 0.18 3.42 2.53 -67.89 -0.17 3.25 16 19 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.73 -16.40 3.72 -53.39 -0.20 -16.60 16 21 C -0.33 -8.49 9.93 -15.06 -0.15 -8.64 16 22 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 23 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 24 N -0.94 -27.76 13.70 55.49 0.76 -27.00 16 25 Si 1.08 24.87 29.92 -169.99 -5.09 19.78 16 26 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.25 6.64 -51.93 -0.34 0.91 16 35 H 0.09 1.53 5.73 -51.93 -0.30 1.24 16 36 H 0.11 0.93 7.16 -51.93 -0.37 0.56 16 37 H 0.11 0.84 7.76 -51.93 -0.40 0.44 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 40 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 41 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 44 H 0.08 1.43 7.74 -51.93 -0.40 1.02 16 45 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.37 8.64 4.77 -40.82 -0.19 8.45 16 49 H 0.25 7.36 6.77 -40.82 -0.28 7.08 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -36.73 395.00 -8.90 -45.63 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.02 Total: 8.09 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 1.03 Total: -3.39 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.27 Total: -63.94 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.87 Total: -38.71 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 16 Polarization: 27.22 SS G_CDS: -0.64 Total: 26.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.73 -8.90 -45.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569338008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal (2) G-P(sol) polarization free energy of solvation -36.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds