Wall clock time and date at job start Wed Apr 1 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 H 1.09005 * 109.52083 * 54.91170 * 3 2 1 5 5 C 1.53193 * 109.49518 * 294.83885 * 3 2 1 6 6 N 1.46928 * 108.77407 * 185.41026 * 5 3 2 7 7 C 1.34774 * 120.63102 * 233.62875 * 6 5 3 8 8 O 1.21276 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99811 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.46933 * 179.97438 * 9 7 6 11 11 C 1.46496 * 120.00502 * 274.99706 * 10 9 7 12 12 S 1.65604 * 119.99868 * 95.00236 * 10 9 7 13 13 C 1.81397 * 104.45212 * 89.99967 * 12 10 9 14 14 O 1.42104 * 104.27748 * 206.07327 * 12 10 9 15 15 O 1.42101 * 104.27415 * 333.92600 * 12 10 9 16 16 C 1.46921 * 118.73721 * 53.60956 * 6 5 3 17 17 C 1.53191 * 108.77509 * 306.39006 * 16 6 5 18 18 C 1.53033 * 109.31515 * 54.63639 * 17 16 6 19 19 H 1.08999 * 109.45340 * 178.61944 * 18 17 16 20 20 N 1.46500 * 109.46114 * 58.65337 * 18 17 16 21 21 C 1.36943 * 119.99878 * 84.93157 * 20 18 17 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 H 1.08998 * 109.46886 * 60.00422 * 1 2 3 30 30 H 1.09004 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47428 * 300.00277 * 1 2 3 32 32 H 1.09003 * 109.47395 * 240.00259 * 2 1 3 33 33 H 1.08999 * 109.47265 * 119.99961 * 2 1 3 34 34 H 1.08995 * 109.58798 * 305.19841 * 5 3 2 35 35 H 1.09003 * 109.58810 * 65.62449 * 5 3 2 36 36 H 1.08996 * 109.47381 * 299.99735 * 9 7 6 37 37 H 1.08999 * 109.47275 * 60.00321 * 9 7 6 38 38 H 1.09011 * 109.46694 * 89.99631 * 11 10 9 39 39 H 1.08990 * 109.47640 * 209.99838 * 11 10 9 40 40 H 1.09002 * 109.47027 * 330.00917 * 11 10 9 41 41 H 1.08998 * 109.47082 * 59.99652 * 13 12 10 42 42 H 1.09002 * 109.47150 * 180.02562 * 13 12 10 43 43 H 1.09006 * 109.46813 * 299.99848 * 13 12 10 44 44 H 1.08995 * 109.59159 * 66.17573 * 16 6 5 45 45 H 1.09001 * 109.58701 * 186.46124 * 16 6 5 46 46 H 1.08998 * 109.49826 * 294.68455 * 17 16 6 47 47 H 1.09007 * 109.49928 * 174.58679 * 17 16 6 48 48 H 0.97000 * 120.00415 * 264.93105 * 20 18 17 49 49 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5673 8 8 0.2896 4.4406 -1.7318 9 6 2.1227 5.9217 -1.6063 10 7 1.0934 6.9340 -1.8552 11 6 0.6840 7.2404 -3.2280 12 16 0.3926 7.7321 -0.5846 13 6 1.4424 9.1895 -0.3310 14 8 -0.8849 8.1168 -1.0741 15 8 0.5179 6.8311 0.5071 16 6 3.6952 3.5888 -1.1499 17 6 4.0736 2.8882 0.1588 18 6 3.5652 1.4452 0.1258 19 1 3.8546 0.9372 1.0457 20 7 4.1507 0.7476 -1.0218 21 6 5.3886 0.1719 -0.9144 22 1 5.9330 0.2318 0.0164 23 6 5.9431 -0.4895 -2.0015 24 7 5.2794 -0.5629 -3.1357 25 14 7.6314 -1.2753 -1.8548 26 1 7.6075 -2.3035 -0.7835 27 1 8.6349 -0.2335 -1.5187 28 1 7.9943 -1.9133 -3.1457 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9965 1.5377 -2.1549 35 1 0.5532 2.2161 -1.3586 36 1 2.6079 6.1236 -0.6514 37 1 2.8641 5.9540 -2.4046 38 1 -0.1438 6.5912 -3.5138 39 1 0.3671 8.2814 -3.2890 40 1 1.5241 7.0760 -3.9029 41 1 1.4493 9.7945 -1.2376 42 1 1.0505 9.7799 0.4973 43 1 2.4585 8.8695 -0.1000 44 1 4.2209 3.1190 -1.9810 45 1 3.9673 4.6429 -1.0944 46 1 3.6192 3.4148 0.9980 47 1 5.1577 2.8895 0.2719 48 1 3.6616 0.6935 -1.8577 49 1 4.4025 -0.1551 -3.2118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569338008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:30 Heat of formation + Delta-G solvation = -111.695363 kcal Electronic energy + Delta-G solvation = -30753.020063 eV Core-core repulsion = 26648.940665 eV Total energy + Delta-G solvation = -4104.079398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45575 -39.44794 -38.22009 -37.05428 -36.72604 -36.06660 -35.51243 -33.44666 -30.97174 -30.59940 -30.29366 -29.20850 -26.76593 -25.62748 -25.25565 -25.02805 -22.27856 -21.25842 -20.10767 -19.69441 -19.17502 -18.74132 -18.42073 -17.49857 -17.28679 -16.83774 -16.76199 -16.34952 -15.86296 -15.51962 -15.49112 -15.27737 -14.88215 -14.75602 -14.52340 -14.34113 -14.19052 -14.01285 -13.86287 -13.77779 -13.61383 -13.30464 -13.21344 -13.16730 -13.00292 -12.67261 -12.65298 -12.58465 -12.52084 -12.20353 -12.13961 -11.93768 -11.88939 -11.68478 -11.64298 -11.42542 -11.22306 -11.03856 -10.80183 -9.98056 -9.62711 -8.99410 -8.27127 -5.20421 -0.76393 1.55328 1.60001 1.62947 1.71596 1.87424 2.03568 2.77312 3.01124 3.12485 3.47510 3.50139 3.57981 3.74207 3.78455 3.94317 3.98575 4.07522 4.15756 4.19773 4.24082 4.29086 4.34531 4.36993 4.41754 4.52810 4.62011 4.65789 4.77360 4.80725 4.87650 4.90980 4.97532 4.97773 5.04855 5.08423 5.13895 5.17287 5.27010 5.30752 5.40409 5.43205 5.61934 5.72496 6.45092 6.59389 7.14845 7.19196 8.10513 8.23464 9.23998 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.003000 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.994310 B = 9329.883448 C =10083.802643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.095 4.095 4 H 0.079 0.921 5 C 0.126 3.874 6 N -0.604 5.604 7 C 0.486 3.514 8 O -0.582 6.582 9 C 0.106 3.894 10 N -0.988 5.988 11 C 0.091 3.909 12 S 2.596 3.404 13 C -0.638 4.638 14 O -0.998 6.998 15 O -0.996 6.996 16 C 0.117 3.883 17 C -0.145 4.145 18 C 0.178 3.822 19 H 0.041 0.959 20 N -0.735 5.735 21 C -0.315 4.315 22 H 0.066 0.934 23 C -0.103 4.103 24 N -0.979 5.979 25 Si 1.122 2.878 26 H -0.285 1.285 27 H -0.276 1.276 28 H -0.300 1.300 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.029 0.971 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.055 0.945 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.359 0.641 49 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 21.677 5.207 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.115 4.115 4 H 0.097 0.903 5 C 0.002 3.998 6 N -0.337 5.337 7 C 0.274 3.726 8 O -0.462 6.462 9 C -0.023 4.023 10 N -0.823 5.823 11 C -0.054 4.054 12 S 2.694 3.306 13 C -0.793 4.793 14 O -0.989 6.989 15 O -0.986 6.986 16 C -0.005 4.005 17 C -0.185 4.185 18 C 0.069 3.931 19 H 0.059 0.941 20 N -0.378 5.378 21 C -0.446 4.446 22 H 0.084 0.916 23 C -0.294 4.294 24 N -0.628 5.628 25 Si 0.949 3.051 26 H -0.212 1.212 27 H -0.202 1.202 28 H -0.227 1.227 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.175 0.825 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.192 0.808 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.830 20.483 4.962 21.420 hybrid contribution -1.100 0.387 0.204 1.183 sum -4.930 20.869 5.166 22.057 Atomic orbital electron populations 1.21783 0.94840 1.01983 1.01731 1.21328 0.96005 0.95303 1.01563 1.21680 0.96143 0.96317 0.97357 0.90300 1.21413 0.98428 0.82706 0.97208 1.48245 1.09157 1.06130 1.70179 1.22078 0.87068 0.88046 0.75371 1.90647 1.16843 1.87108 1.51612 1.21462 0.90517 0.83010 1.07322 1.57049 1.54514 1.49775 1.21008 1.21628 1.01146 1.01548 0.81099 1.05193 0.75430 0.77399 0.72588 1.30291 1.16879 1.18218 1.13873 1.93543 1.40142 1.85273 1.79941 1.93571 1.87351 1.63188 1.54531 1.21765 0.78106 1.02440 0.98146 1.22392 1.01609 0.97305 0.97207 1.20348 0.90549 0.91876 0.90283 0.94066 1.42566 1.18546 1.65575 1.11092 1.20309 0.95377 1.29786 0.99160 0.91618 1.26893 1.08416 1.01496 0.92639 1.71004 1.14535 1.49928 1.27296 0.82668 0.71785 0.75802 0.74854 1.21156 1.20209 1.22685 0.93365 0.91902 0.92104 0.93850 0.92045 0.93541 0.90411 0.84517 0.83413 0.95256 0.88668 0.88347 0.82594 0.83602 0.82502 0.92688 0.86362 0.90676 0.91035 0.80750 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.67 71.98 0.70 -3.50 16 2 C -0.10 -3.49 5.19 30.60 0.16 -3.34 16 3 C -0.10 -3.20 2.14 -10.71 -0.02 -3.22 16 4 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 5 C 0.13 4.42 5.03 86.36 0.43 4.85 16 6 N -0.60 -18.69 2.97 -818.93 -2.43 -21.12 16 7 C 0.49 14.79 7.76 87.66 0.68 15.47 16 8 O -0.58 -22.81 15.83 -3.02 -0.05 -22.86 16 9 C 0.11 1.91 4.10 85.63 0.35 2.26 16 10 N -0.99 -17.93 2.61 -543.23 -1.42 -19.35 16 11 C 0.09 1.42 10.22 127.77 1.31 2.72 16 12 S 2.60 49.71 5.96 -56.49 -0.34 49.37 16 13 C -0.64 -3.16 10.99 113.37 1.25 -1.91 16 14 O -1.00 -27.32 17.09 -127.65 -2.18 -29.50 16 15 O -1.00 -27.81 16.99 -127.65 -2.17 -29.98 16 16 C 0.12 3.22 6.08 86.36 0.53 3.75 16 17 C -0.14 -4.36 5.78 30.67 0.18 -4.18 16 18 C 0.18 6.57 2.53 45.01 0.11 6.68 16 19 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 20 N -0.73 -33.69 3.72 -322.83 -1.20 -34.89 16 21 C -0.31 -16.38 9.93 84.03 0.83 -15.55 16 22 H 0.07 3.34 7.83 -2.91 -0.02 3.32 16 23 C -0.10 -5.70 5.50 84.86 0.47 -5.23 16 24 N -0.98 -59.18 13.70 21.65 0.30 -58.88 16 25 Si 1.12 50.19 29.92 68.60 2.05 52.24 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H 0.05 1.43 6.70 -2.39 -0.02 1.41 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.70 7.70 -2.39 -0.02 1.68 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.82 6.64 -2.39 -0.02 1.81 16 35 H 0.08 2.87 5.73 -2.39 -0.01 2.86 16 36 H 0.14 1.72 7.16 -2.39 -0.02 1.70 16 37 H 0.15 1.57 7.76 -2.39 -0.02 1.55 16 38 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 0.98 7.79 -2.39 -0.02 0.96 16 40 H 0.10 0.99 7.94 -2.39 -0.02 0.97 16 41 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.16 0.08 8.14 -2.39 -0.02 0.07 16 44 H 0.05 1.85 7.74 -2.39 -0.02 1.84 16 45 H 0.12 2.06 5.93 -2.39 -0.01 2.04 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.36 17.69 4.77 -92.71 -0.44 17.25 16 49 H 0.24 14.64 6.77 -92.71 -0.63 14.01 16 Total: -1.00 -85.57 395.00 0.18 -85.39 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.64 Total: 30.76 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.97 Total: -1.20 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -4.75 Total: -134.24 kcal Atomic # 8 Polarization: -77.94 SS G_CDS: -4.40 Total: -82.34 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Atomic # 16 Polarization: 49.71 SS G_CDS: -0.34 Total: 49.37 kcal Total: -85.57 0.18 -85.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569338008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.302 kcal (2) G-P(sol) polarization free energy of solvation -85.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds