Wall clock time and date at job start Wed Apr 1 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 H 1.08999 * 109.49650 * 305.06553 * 3 2 1 5 5 C 1.53625 * 109.45430 * 65.26946 * 3 2 1 6 6 N 1.46928 * 108.54023 * 174.73804 * 5 3 2 7 7 C 1.34781 * 120.62486 * 126.37072 * 6 5 3 8 8 O 1.21279 * 120.00423 * 359.72096 * 7 6 5 9 9 C 1.50700 * 119.99690 * 179.72251 * 7 6 5 10 10 N 1.46496 * 109.47090 * 180.02562 * 9 7 6 11 11 C 1.46501 * 119.99951 * 274.99830 * 10 9 7 12 12 S 1.65599 * 120.00159 * 95.00067 * 10 9 7 13 13 C 1.81397 * 104.44825 * 269.99969 * 12 10 9 14 14 O 1.42105 * 104.27797 * 26.07081 * 12 10 9 15 15 O 1.42101 * 104.27901 * 153.92789 * 12 10 9 16 16 C 1.46921 * 118.74288 * 306.09700 * 6 5 3 17 17 C 1.53201 * 108.77516 * 53.85804 * 16 6 5 18 18 C 1.53038 * 109.49818 * 184.99714 * 3 2 1 19 19 H 1.09000 * 109.46069 * 298.67639 * 18 3 2 20 20 N 1.46505 * 109.44710 * 58.64174 * 18 3 2 21 21 C 1.36935 * 119.99673 * 205.06101 * 20 18 3 22 22 H 1.07996 * 120.00365 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00397 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46833 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46960 * 120.00201 * 25 23 21 28 28 H 1.48504 * 109.46806 * 239.99865 * 25 23 21 29 29 H 1.08998 * 109.47165 * 300.00158 * 1 2 3 30 30 H 1.09009 * 109.47130 * 59.99889 * 1 2 3 31 31 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47447 * 240.00557 * 2 1 3 33 33 H 1.08996 * 109.47176 * 120.00360 * 2 1 3 34 34 H 1.09002 * 109.73699 * 55.00567 * 5 3 2 35 35 H 1.09001 * 109.66884 * 294.43712 * 5 3 2 36 36 H 1.09001 * 109.47596 * 59.99621 * 9 7 6 37 37 H 1.09002 * 109.47208 * 300.00137 * 9 7 6 38 38 H 1.09001 * 109.47124 * 269.99859 * 11 10 9 39 39 H 1.08993 * 109.47326 * 30.00111 * 11 10 9 40 40 H 1.09007 * 109.47047 * 150.00166 * 11 10 9 41 41 H 1.09003 * 109.47352 * 180.02562 * 13 12 10 42 42 H 1.09004 * 109.47032 * 299.99803 * 13 12 10 43 43 H 1.09000 * 109.47124 * 60.00075 * 13 12 10 44 44 H 1.08994 * 109.58737 * 173.64298 * 16 6 5 45 45 H 1.08996 * 109.58687 * 294.07580 * 16 6 5 46 46 H 1.08999 * 109.49211 * 65.31384 * 17 16 6 47 47 H 1.08992 * 109.50098 * 185.37986 * 17 16 6 48 48 H 0.96997 * 120.00364 * 25.05553 * 20 18 3 49 49 H 0.96996 * 120.00707 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6392 2.1270 1.3157 6 7 2.2450 3.4651 1.3496 7 6 1.4855 4.5573 1.5665 8 8 0.2895 4.4414 1.7309 9 6 2.1225 5.9225 1.6046 10 7 1.0934 6.9348 1.8540 11 6 0.3185 7.4820 0.7376 12 16 0.8059 7.4605 3.3978 13 6 -0.4697 6.3357 4.0288 14 8 2.0370 7.2486 4.0752 15 8 0.2780 8.7691 3.2298 16 6 3.6951 3.5895 1.1487 17 6 4.0736 2.8882 -0.1596 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9265 0.7284 20 7 3.9539 0.7616 -1.3618 21 6 5.1915 0.1846 -1.4650 22 1 5.8812 0.2338 -0.6354 23 6 5.5596 -0.4635 -2.6360 24 7 4.7190 -0.5239 -3.6470 25 14 7.2482 -1.2499 -2.7772 26 1 7.9977 -1.0433 -1.5120 27 1 7.0968 -2.7051 -3.0314 28 1 7.9925 -0.6260 -3.9006 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0007 1.5407 2.1606 35 1 0.5541 2.2156 1.3674 36 1 2.6072 6.1242 0.6494 37 1 2.8646 5.9550 2.4024 38 1 0.8266 8.3599 0.3385 39 1 0.2263 6.7286 -0.0445 40 1 -0.6741 7.7649 1.0884 41 1 -0.7235 6.6118 5.0523 42 1 -1.3590 6.4069 3.4025 43 1 -0.0934 5.3129 4.0107 44 1 3.9667 4.6435 1.0902 45 1 4.2207 3.1202 1.9802 46 1 3.6191 3.4143 -0.9991 47 1 5.1576 2.8899 -0.2730 48 1 3.3347 0.7176 -2.1071 49 1 4.9761 -0.9771 -4.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569338010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:40 Heat of formation + Delta-G solvation = -89.417132 kcal Electronic energy + Delta-G solvation = -30264.282031 eV Core-core repulsion = 26161.168690 eV Total energy + Delta-G solvation = -4103.113341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.35314 -38.11216 -37.42131 -36.32372 -35.89033 -34.84855 -33.83172 -31.79843 -29.85624 -29.65483 -29.53334 -28.15819 -25.81021 -24.59682 -23.86051 -22.80610 -20.91309 -20.15989 -19.43096 -18.83812 -18.03095 -17.46326 -17.11825 -16.72106 -16.42305 -15.81129 -15.35523 -15.01299 -14.74343 -14.35485 -14.01493 -13.82523 -13.71089 -13.56084 -13.41732 -13.37157 -13.27683 -13.11030 -12.96472 -12.76023 -12.55163 -12.36969 -12.17207 -11.97485 -11.85766 -11.72990 -11.68292 -11.36558 -11.30614 -10.99358 -10.90751 -10.77543 -10.44367 -10.28142 -10.25708 -10.18395 -9.79236 -9.66472 -9.20601 -8.95808 -8.58525 -7.02499 -5.83211 -3.12171 -0.00853 2.20107 2.46263 2.98598 3.38264 3.44350 3.46472 3.57209 3.85996 4.27360 4.35682 4.52568 4.63985 4.73967 4.91169 4.97895 5.06819 5.14894 5.16667 5.28057 5.32576 5.36901 5.47793 5.51432 5.54239 5.58667 5.59931 5.61398 5.65001 5.80628 5.93299 6.03613 6.06235 6.09154 6.24379 6.28189 6.32321 6.39025 6.47944 6.59934 6.76057 6.88827 6.98447 7.36786 7.64078 8.03936 8.34830 9.46634 10.03416 10.38010 11.39156 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002585 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.729983 B =10827.993162 C =11574.336419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.117 3.883 6 N -0.601 5.601 7 C 0.490 3.510 8 O -0.545 6.545 9 C 0.095 3.905 10 N -0.983 5.983 11 C 0.099 3.901 12 S 2.611 3.389 13 C -0.660 4.660 14 O -0.958 6.958 15 O -0.956 6.956 16 C 0.102 3.898 17 C -0.152 4.152 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 13.019 12.910 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.088 0.912 5 C -0.005 4.005 6 N -0.334 5.334 7 C 0.275 3.725 8 O -0.423 6.423 9 C -0.035 4.035 10 N -0.819 5.819 11 C -0.046 4.046 12 S 2.704 3.296 13 C -0.811 4.811 14 O -0.949 6.949 15 O -0.946 6.946 16 C -0.021 4.021 17 C -0.193 4.193 18 C 0.072 3.928 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.773 13.611 13.406 21.459 hybrid contribution 0.388 -1.184 -0.673 1.416 sum -9.386 12.427 12.733 20.116 Atomic orbital electron populations 1.21838 0.96833 1.01048 1.01210 1.21456 0.94341 0.95737 1.03510 1.21855 0.97669 0.96247 0.96558 0.91205 1.21879 0.99430 0.81319 0.97895 1.48229 1.08759 1.06764 1.69660 1.21275 0.87501 0.86759 0.76919 1.90650 1.14545 1.86598 1.50547 1.21372 0.90625 0.84966 1.06509 1.57087 1.47826 1.52712 1.24243 1.21459 0.94959 0.98769 0.89384 1.04915 0.76090 0.75409 0.73191 1.30451 1.19846 1.18600 1.12213 1.93591 1.40981 1.86920 1.73382 1.93606 1.81760 1.34618 1.84645 1.21973 0.79176 1.01326 0.99651 1.22696 1.02398 0.99297 0.94936 1.20189 0.90756 0.90549 0.91272 0.93374 1.42416 1.16524 1.64414 1.12696 1.19249 0.91778 1.27300 0.98625 0.91160 1.24729 0.98133 1.01503 0.96446 1.69661 1.35169 1.48324 1.04793 0.86164 0.83998 0.78906 0.77380 1.20565 1.21926 1.21939 0.93295 0.93030 0.93173 0.89765 0.92454 0.91542 0.89098 0.86579 0.85781 0.92039 0.90772 0.91026 0.85991 0.85231 0.84902 0.90341 0.90963 0.92125 0.90377 0.78211 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.68 37.16 0.36 -1.61 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.10 -1.55 1.93 -90.27 -0.17 -1.72 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 5 C 0.12 1.52 5.36 -3.48 -0.02 1.50 16 6 N -0.60 -7.22 2.97 -172.50 -0.51 -7.73 16 7 C 0.49 5.74 7.76 -10.98 -0.09 5.66 16 8 O -0.55 -7.42 14.43 5.56 0.08 -7.34 16 9 C 0.09 0.87 4.46 -5.20 -0.02 0.85 16 10 N -0.98 -9.15 2.61 -123.05 -0.32 -9.48 16 11 C 0.10 0.80 10.20 59.85 0.61 1.41 16 12 S 2.61 25.48 6.02 -107.50 -0.65 24.83 16 13 C -0.66 -5.13 10.52 101.05 1.06 -4.07 16 14 O -0.96 -11.73 16.53 -57.54 -0.95 -12.69 16 15 O -0.96 -11.62 17.09 -57.54 -0.98 -12.61 16 16 C 0.10 1.13 6.34 -3.71 -0.02 1.11 16 17 C -0.15 -2.26 5.66 -26.61 -0.15 -2.41 16 18 C 0.18 3.17 2.19 -67.89 -0.15 3.02 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.34 4.33 -53.39 -0.23 -16.57 16 21 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 25 Si 0.90 21.49 29.55 -169.99 -5.02 16.46 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 30 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.56 7.21 -51.93 -0.37 1.18 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.22 5.74 -51.93 -0.30 0.92 16 36 H 0.12 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.12 1.05 6.62 -51.93 -0.34 0.71 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 41 H 0.12 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.13 1.16 7.22 -51.92 -0.37 0.78 16 44 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.38 9.49 7.51 -40.82 -0.31 9.18 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -33.21 396.98 -9.05 -42.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.19 Total: 7.85 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 1.02 Total: -4.82 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.34 Total: -59.94 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.85 Total: -32.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 25.48 SS G_CDS: -0.65 Total: 24.83 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.21 -9.05 -42.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569338010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.155 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds