Wall clock time and date at job start Wed Apr 1 2020 05:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 H 1.08999 * 109.49650 * 305.06553 * 3 2 1 5 5 C 1.53625 * 109.45430 * 65.26946 * 3 2 1 6 6 N 1.46928 * 108.54023 * 174.73804 * 5 3 2 7 7 C 1.34781 * 120.62486 * 126.37072 * 6 5 3 8 8 O 1.21279 * 120.00423 * 359.72096 * 7 6 5 9 9 C 1.50700 * 119.99690 * 179.72251 * 7 6 5 10 10 N 1.46496 * 109.47090 * 180.02562 * 9 7 6 11 11 C 1.46501 * 119.99951 * 274.99830 * 10 9 7 12 12 S 1.65599 * 120.00159 * 95.00067 * 10 9 7 13 13 C 1.81397 * 104.44825 * 269.99969 * 12 10 9 14 14 O 1.42105 * 104.27797 * 26.07081 * 12 10 9 15 15 O 1.42101 * 104.27901 * 153.92789 * 12 10 9 16 16 C 1.46921 * 118.74288 * 306.09700 * 6 5 3 17 17 C 1.53201 * 108.77516 * 53.85804 * 16 6 5 18 18 C 1.53038 * 109.49818 * 184.99714 * 3 2 1 19 19 H 1.09000 * 109.46069 * 298.67639 * 18 3 2 20 20 N 1.46505 * 109.44710 * 58.64174 * 18 3 2 21 21 C 1.36935 * 119.99673 * 205.06101 * 20 18 3 22 22 H 1.07996 * 120.00365 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00397 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46833 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46960 * 120.00201 * 25 23 21 28 28 H 1.48504 * 109.46806 * 239.99865 * 25 23 21 29 29 H 1.08998 * 109.47165 * 300.00158 * 1 2 3 30 30 H 1.09009 * 109.47130 * 59.99889 * 1 2 3 31 31 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47447 * 240.00557 * 2 1 3 33 33 H 1.08996 * 109.47176 * 120.00360 * 2 1 3 34 34 H 1.09002 * 109.73699 * 55.00567 * 5 3 2 35 35 H 1.09001 * 109.66884 * 294.43712 * 5 3 2 36 36 H 1.09001 * 109.47596 * 59.99621 * 9 7 6 37 37 H 1.09002 * 109.47208 * 300.00137 * 9 7 6 38 38 H 1.09001 * 109.47124 * 269.99859 * 11 10 9 39 39 H 1.08993 * 109.47326 * 30.00111 * 11 10 9 40 40 H 1.09007 * 109.47047 * 150.00166 * 11 10 9 41 41 H 1.09003 * 109.47352 * 180.02562 * 13 12 10 42 42 H 1.09004 * 109.47032 * 299.99803 * 13 12 10 43 43 H 1.09000 * 109.47124 * 60.00075 * 13 12 10 44 44 H 1.08994 * 109.58737 * 173.64298 * 16 6 5 45 45 H 1.08996 * 109.58687 * 294.07580 * 16 6 5 46 46 H 1.08999 * 109.49211 * 65.31384 * 17 16 6 47 47 H 1.08992 * 109.50098 * 185.37986 * 17 16 6 48 48 H 0.96997 * 120.00364 * 25.05553 * 20 18 3 49 49 H 0.96996 * 120.00707 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6392 2.1270 1.3157 6 7 2.2450 3.4651 1.3496 7 6 1.4855 4.5573 1.5665 8 8 0.2895 4.4414 1.7309 9 6 2.1225 5.9225 1.6046 10 7 1.0934 6.9348 1.8540 11 6 0.3185 7.4820 0.7376 12 16 0.8059 7.4605 3.3978 13 6 -0.4697 6.3357 4.0288 14 8 2.0370 7.2486 4.0752 15 8 0.2780 8.7691 3.2298 16 6 3.6951 3.5895 1.1487 17 6 4.0736 2.8882 -0.1596 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9265 0.7284 20 7 3.9539 0.7616 -1.3618 21 6 5.1915 0.1846 -1.4650 22 1 5.8812 0.2338 -0.6354 23 6 5.5596 -0.4635 -2.6360 24 7 4.7190 -0.5239 -3.6470 25 14 7.2482 -1.2499 -2.7772 26 1 7.9977 -1.0433 -1.5120 27 1 7.0968 -2.7051 -3.0314 28 1 7.9925 -0.6260 -3.9006 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0007 1.5407 2.1606 35 1 0.5541 2.2156 1.3674 36 1 2.6072 6.1242 0.6494 37 1 2.8646 5.9550 2.4024 38 1 0.8266 8.3599 0.3385 39 1 0.2263 6.7286 -0.0445 40 1 -0.6741 7.7649 1.0884 41 1 -0.7235 6.6118 5.0523 42 1 -1.3590 6.4069 3.4025 43 1 -0.0934 5.3129 4.0107 44 1 3.9667 4.6435 1.0902 45 1 4.2207 3.1202 1.9802 46 1 3.6191 3.4143 -0.9991 47 1 5.1576 2.8899 -0.2730 48 1 3.3347 0.7176 -2.1071 49 1 4.9761 -0.9771 -4.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569338010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:38 Heat of formation + Delta-G solvation = -113.142252 kcal Electronic energy + Delta-G solvation = -30265.310829 eV Core-core repulsion = 26161.168690 eV Total energy + Delta-G solvation = -4104.142139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.34326 -39.26080 -38.25979 -37.15266 -36.69758 -36.12995 -35.28176 -33.41811 -31.05278 -30.77688 -30.27078 -29.18559 -26.85451 -25.88667 -24.95901 -24.25612 -22.18059 -21.29105 -20.48772 -19.69071 -19.03503 -18.79320 -18.30626 -17.53945 -17.23913 -16.76116 -16.70949 -16.28481 -15.66016 -15.64478 -15.36197 -15.11639 -14.70514 -14.63867 -14.52860 -14.26699 -14.12047 -14.02814 -13.91366 -13.61944 -13.56495 -13.35818 -13.22485 -13.09444 -12.99703 -12.86206 -12.64476 -12.63713 -12.53727 -12.45392 -12.11093 -12.05424 -11.99012 -11.81664 -11.55536 -11.49108 -11.17857 -11.05357 -10.81928 -9.95844 -9.61253 -8.92870 -7.89419 -5.16147 -0.73453 1.47524 1.49227 1.50310 1.56672 1.59170 2.07583 2.59433 2.85236 3.11429 3.44051 3.49255 3.62671 3.81763 3.85714 4.05287 4.08519 4.09900 4.13659 4.28383 4.30972 4.39024 4.43313 4.47233 4.50500 4.67181 4.72923 4.78980 4.84748 4.86906 4.88691 4.94384 5.00034 5.01324 5.05652 5.09969 5.19436 5.30446 5.38892 5.43332 5.50645 5.55191 5.62168 5.70848 6.32478 6.43597 7.12168 7.39277 8.16461 8.38522 9.34267 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002585 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.729983 B =10827.993162 C =11574.336419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.091 4.091 4 H 0.053 0.947 5 C 0.125 3.875 6 N -0.605 5.605 7 C 0.489 3.511 8 O -0.564 6.564 9 C 0.093 3.907 10 N -0.986 5.986 11 C 0.093 3.907 12 S 2.621 3.379 13 C -0.650 4.650 14 O -0.985 6.985 15 O -0.983 6.983 16 C 0.109 3.891 17 C -0.143 4.143 18 C 0.176 3.824 19 H 0.046 0.954 20 N -0.731 5.731 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.964 3.036 26 H -0.264 1.264 27 H -0.300 1.300 28 H -0.298 1.298 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.370 0.630 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 14.096 14.977 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.111 4.111 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.337 5.337 7 C 0.276 3.724 8 O -0.443 6.443 9 C -0.036 4.036 10 N -0.822 5.822 11 C -0.052 4.052 12 S 2.716 3.284 13 C -0.803 4.803 14 O -0.976 6.976 15 O -0.974 6.974 16 C -0.014 4.014 17 C -0.184 4.184 18 C 0.068 3.932 19 H 0.064 0.936 20 N -0.370 5.370 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.188 1.188 27 H -0.227 1.227 28 H -0.226 1.226 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.202 0.798 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.863 14.740 15.524 23.570 hybrid contribution 0.333 -1.509 -1.251 1.988 sum -9.530 13.231 14.274 21.671 Atomic orbital electron populations 1.21764 0.94899 1.01764 1.01720 1.21363 0.96033 0.95525 1.01751 1.21695 0.95699 0.96232 0.97506 0.92830 1.21724 0.99521 0.81985 0.96561 1.48263 1.09107 1.06496 1.69845 1.21729 0.87258 0.87349 0.76065 1.90641 1.15472 1.86912 1.51296 1.21513 0.90610 0.83352 1.08110 1.57027 1.48192 1.52590 1.24350 1.21599 0.95402 0.99085 0.89095 1.04467 0.75827 0.75094 0.72972 1.30340 1.18985 1.17218 1.13724 1.93550 1.42749 1.87264 1.74010 1.93569 1.82072 1.36706 1.85062 1.21996 0.78745 1.03050 0.97609 1.22472 1.01379 0.97504 0.97030 1.20454 0.92472 0.91517 0.88756 0.93621 1.42604 1.15427 1.64983 1.14016 1.19615 0.92585 1.25332 0.98183 0.90448 1.25445 1.01383 1.03377 0.96694 1.69814 1.36941 1.50239 1.05225 0.85197 0.80494 0.77310 0.77540 1.18840 1.22727 1.22609 0.91581 0.93622 0.92416 0.93734 0.91886 0.90270 0.89136 0.84446 0.84633 0.91215 0.90727 0.90336 0.83759 0.84303 0.85348 0.86997 0.89466 0.93240 0.91510 0.79825 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.68 71.98 0.70 -2.92 16 2 C -0.11 -3.30 5.31 30.60 0.16 -3.13 16 3 C -0.09 -2.69 1.93 -10.57 -0.02 -2.71 16 4 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 5 C 0.13 2.97 5.36 86.51 0.46 3.44 16 6 N -0.60 -12.91 2.97 -818.06 -2.43 -15.34 16 7 C 0.49 10.15 7.76 87.66 0.68 10.83 16 8 O -0.56 -14.01 14.43 -3.03 -0.04 -14.05 16 9 C 0.09 1.45 4.46 85.63 0.38 1.83 16 10 N -0.99 -16.16 2.61 -543.23 -1.42 -17.58 16 11 C 0.09 1.31 10.20 127.77 1.30 2.62 16 12 S 2.62 46.36 6.02 -56.49 -0.34 46.02 16 13 C -0.65 -8.46 10.52 113.37 1.19 -7.27 16 14 O -0.99 -22.39 16.53 -127.65 -2.11 -24.50 16 15 O -0.98 -22.62 17.09 -127.65 -2.18 -24.80 16 16 C 0.11 2.08 6.34 86.37 0.55 2.63 16 17 C -0.14 -4.06 5.66 30.67 0.17 -3.89 16 18 C 0.18 6.05 2.19 45.02 0.10 6.15 16 19 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 20 N -0.73 -33.81 4.33 -322.82 -1.40 -35.20 16 21 C -0.23 -11.64 9.93 84.03 0.83 -10.80 16 22 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 23 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 25 Si 0.96 44.73 29.55 68.60 2.03 46.76 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H 0.07 1.44 6.70 -2.39 -0.02 1.42 16 30 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.71 7.21 -2.39 -0.02 1.69 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.22 5.74 -2.39 -0.01 2.20 16 36 H 0.14 1.56 7.66 -2.39 -0.02 1.54 16 37 H 0.14 1.85 6.62 -2.39 -0.02 1.83 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.05 8.07 -2.39 -0.02 1.03 16 40 H 0.08 0.98 7.79 -2.38 -0.02 0.96 16 41 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.13 1.91 7.22 -2.39 -0.02 1.89 16 44 H 0.11 1.45 5.93 -2.39 -0.01 1.44 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.37 19.02 7.51 -92.71 -0.70 18.33 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -72.53 396.98 -0.37 -72.91 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.25 Total: 30.33 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.98 Total: -7.02 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -4.96 Total: -125.66 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -4.34 Total: -63.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 46.36 SS G_CDS: -0.34 Total: 46.02 kcal Total: -72.53 -0.37 -72.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569338010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.233 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds