Wall clock time and date at job start Wed Apr 1 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99832 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47395 * 64.99841 * 4 3 2 6 6 C 1.36770 * 120.00034 * 85.48053 * 5 4 3 7 7 H 1.08001 * 120.00433 * 221.59662 * 6 5 4 8 8 C 1.39117 * 120.00100 * 41.59941 * 6 5 4 9 9 N 1.31323 * 119.99517 * 17.78973 * 8 6 5 10 10 Si 1.86798 * 120.00373 * 197.78967 * 8 6 5 11 11 H 1.48496 * 109.47100 * 95.00357 * 10 8 6 12 12 H 1.48498 * 109.46969 * 215.00838 * 10 8 6 13 13 H 1.48498 * 109.47012 * 335.00575 * 10 8 6 14 14 C 1.34779 * 119.99535 * 265.20815 * 5 4 3 15 15 O 1.21558 * 120.00234 * 4.45066 * 14 5 4 16 16 C 1.48055 * 119.99514 * 184.44245 * 14 5 4 17 17 C 1.39734 * 119.66431 * 19.69394 * 16 14 5 18 18 C 1.38489 * 119.24172 * 179.78756 * 17 16 14 19 19 C 1.38630 * 118.56312 * 0.47510 * 18 17 16 20 20 C 1.39567 * 119.26898 * 359.74398 * 19 18 17 21 21 C 1.48222 * 119.65426 * 180.02562 * 20 19 18 22 22 O 1.21507 * 119.99777 * 4.84605 * 21 20 19 23 23 N 1.34775 * 119.99915 * 184.84768 * 21 20 19 24 24 C 1.47019 * 125.65014 * 6.09882 * 23 21 20 25 25 C 1.54321 * 107.27509 * 180.96793 * 24 23 21 26 26 C 1.55151 * 102.86281 * 22.52321 * 25 24 23 27 27 C 1.47428 * 125.64797 * 186.39956 * 23 21 20 28 28 N 1.32394 * 120.69889 * 0.02612 * 20 19 18 29 29 H 1.09000 * 109.47402 * 60.00377 * 1 2 3 30 30 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47085 * 300.00292 * 1 2 3 32 32 H 1.08997 * 109.46919 * 59.99858 * 3 2 1 33 33 H 1.09001 * 109.46883 * 299.99825 * 3 2 1 34 34 H 1.08995 * 109.47047 * 304.99425 * 4 3 2 35 35 H 1.09002 * 109.46600 * 184.99606 * 4 3 2 36 36 H 0.97000 * 119.99554 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.37345 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.72365 * 180.19475 * 18 17 16 39 39 H 1.08004 * 120.36503 * 179.72820 * 19 18 17 40 40 H 1.09007 * 109.87931 * 300.50634 * 24 23 21 41 41 H 1.08994 * 109.88728 * 61.67466 * 24 23 21 42 42 H 1.08996 * 110.91982 * 264.10215 * 25 24 23 43 43 H 1.08999 * 110.58859 * 140.78069 * 25 24 23 44 44 H 1.08999 * 111.00384 * 206.22737 * 26 25 24 45 45 H 1.09000 * 111.00913 * 82.38038 * 26 25 24 46 46 H 1.09000 * 110.36939 * 274.68086 * 27 23 21 47 47 H 1.09009 * 110.36084 * 36.88837 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1767 1.3356 -2.3642 7 1 3.8473 0.9854 -3.3313 8 6 4.8057 2.5711 -2.2492 9 7 5.5097 2.8521 -1.1768 10 14 4.6489 3.8304 -3.6199 11 1 3.5376 4.7649 -3.3088 12 1 5.9178 4.5924 -3.7396 13 1 4.3666 3.1348 -4.9012 14 6 4.1879 -0.7654 -1.3077 15 8 3.9368 -1.4614 -0.3432 16 6 4.7265 -1.3786 -2.5430 17 6 5.3914 -0.5808 -3.4779 18 6 5.8957 -1.1642 -4.6282 19 6 5.7125 -2.5255 -4.8161 20 6 5.0348 -3.2633 -3.8444 21 6 4.8347 -4.7194 -4.0363 22 8 5.3349 -5.2808 -4.9908 23 7 4.0978 -5.4206 -3.1522 24 6 3.3353 -4.8524 -2.0309 25 6 2.6743 -6.0295 -1.2831 26 6 3.5658 -7.2355 -1.6806 27 6 3.9280 -6.8850 -3.1454 28 7 4.5687 -2.6764 -2.7530 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 5.9486 3.7134 -1.0967 37 1 5.5140 0.4779 -3.3035 38 1 6.4163 -0.5708 -5.3652 39 1 6.0899 -3.0096 -5.7047 40 1 4.0064 -4.3151 -1.3608 41 1 2.5672 -4.1778 -2.4090 42 1 1.6492 -6.1793 -1.6219 43 1 2.7056 -5.8653 -0.2060 44 1 3.0056 -8.1691 -1.6293 45 1 4.4591 -7.2831 -1.0579 46 1 3.1198 -7.1764 -3.8162 47 1 4.8569 -7.3759 -3.4361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570082922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:26 Heat of formation + Delta-G solvation = -44.883865 kcal Electronic energy + Delta-G solvation = -31771.245444 eV Core-core repulsion = 27534.619259 eV Total energy + Delta-G solvation = -4236.626185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.40572 -39.28684 -38.09708 -37.11451 -36.78068 -35.02037 -32.44382 -31.83959 -31.45247 -30.96346 -29.09658 -28.68438 -25.92002 -25.42183 -24.77060 -23.83280 -22.51561 -21.65360 -21.06733 -19.94241 -19.23131 -17.73589 -17.23015 -16.39096 -16.25850 -15.76010 -15.58307 -15.46060 -15.17539 -15.01659 -14.61036 -14.44515 -14.28425 -14.00510 -13.59023 -13.40055 -13.21742 -13.17046 -12.69479 -12.65369 -12.50684 -12.10676 -11.99132 -11.88618 -11.63022 -11.25226 -11.21236 -11.19837 -11.13229 -11.07783 -10.65708 -10.65229 -10.45516 -10.29627 -10.10251 -9.45750 -9.37777 -9.04920 -8.94494 -8.65236 -8.40802 -8.30339 -7.61816 -6.61392 -4.33428 1.12085 1.54842 2.94723 3.02291 3.07490 3.08506 3.13619 3.82292 3.85159 4.16426 4.47806 4.50556 4.52589 4.75311 4.84491 4.90928 4.97779 5.23301 5.41993 5.46212 5.46935 5.52874 5.63082 5.64275 5.69894 5.71849 5.77751 5.93747 5.94553 6.00536 6.05624 6.06792 6.14624 6.17864 6.25490 6.28465 6.39403 6.52370 6.65692 6.70377 6.79643 7.00076 7.12737 7.26488 7.65631 7.72552 7.83143 8.09615 8.17933 8.44943 8.81533 9.33741 9.79260 10.37213 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.004138 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.286921 B = 6764.597979 C = 8697.189927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.049 3.951 4 C 0.120 3.880 5 N -0.428 5.428 6 C -0.345 4.345 7 H 0.094 0.906 8 C 0.045 3.955 9 N -0.849 5.849 10 Si 0.910 3.090 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.529 3.471 15 O -0.560 6.560 16 C 0.110 3.890 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.109 4.109 20 C 0.052 3.948 21 C 0.593 3.407 22 O -0.548 6.548 23 N -0.603 5.603 24 C 0.113 3.887 25 C -0.135 4.135 26 C -0.133 4.133 27 C 0.106 3.894 28 N -0.416 5.416 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.275 0.725 37 H 0.200 0.800 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -6.504 -1.588 8.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.148 5.148 6 C -0.473 4.473 7 H 0.111 0.889 8 C -0.163 4.163 9 N -0.484 5.484 10 Si 0.735 3.265 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.316 3.684 15 O -0.441 6.441 16 C -0.032 4.032 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.088 4.088 21 C 0.381 3.619 22 O -0.426 6.426 23 N -0.336 5.336 24 C -0.009 4.009 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.017 4.017 28 N -0.130 5.130 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.216 0.784 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.634 -7.627 -0.920 8.971 hybrid contribution 0.067 1.610 -1.389 2.127 sum -4.568 -6.016 -2.308 7.898 Atomic orbital electron populations 1.22619 0.83301 1.01691 0.98828 1.88149 1.17554 1.27899 1.95081 1.23078 0.96278 0.84478 0.98988 1.21498 0.89706 1.01671 0.87522 1.42967 1.57323 1.04192 1.10335 1.19479 1.38162 1.00902 0.88729 0.88860 1.25484 0.94016 0.98875 0.97955 1.69807 1.26882 1.23391 1.28328 0.86169 0.78273 0.80793 0.81236 1.19951 1.20491 1.18846 1.17781 0.81250 0.83421 0.85908 1.90639 1.54347 1.61918 1.37184 1.21329 0.97279 0.88498 0.96097 1.24461 0.91172 1.06006 0.91395 1.21727 0.99099 0.93975 0.98706 1.22118 0.97013 0.94611 0.99274 1.20786 1.01224 0.93781 0.93020 1.17615 0.77667 0.85352 0.81221 1.90724 1.51049 1.70688 1.30144 1.48295 1.48081 1.07394 1.29838 1.22208 0.95792 0.94901 0.87981 1.22727 0.98885 0.94472 1.01276 1.22784 1.00442 0.98511 0.95394 1.22223 1.01561 0.80786 0.97089 1.67631 1.15332 1.11620 1.18383 0.94978 0.90544 0.95127 0.94222 0.93301 0.91312 0.86558 0.91400 0.78417 0.84401 0.84368 0.88398 0.91297 0.91058 0.89842 0.90078 0.90581 0.91595 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.55 9.88 -35.87 -0.35 -7.91 16 3 C 0.05 0.96 6.26 37.16 0.23 1.19 16 4 C 0.12 2.63 5.47 -4.04 -0.02 2.61 16 5 N -0.43 -10.01 2.45 -115.82 -0.28 -10.30 16 6 C -0.34 -7.72 5.83 -15.02 -0.09 -7.81 16 7 H 0.09 2.06 6.31 -52.49 -0.33 1.73 16 8 C 0.04 0.98 4.81 -17.44 -0.08 0.90 16 9 N -0.85 -19.61 11.47 55.50 0.64 -18.98 16 10 Si 0.91 17.03 29.59 -169.99 -5.03 12.00 16 11 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 14 C 0.53 12.87 7.34 -12.23 -0.09 12.78 16 15 O -0.56 -14.73 15.96 4.68 0.07 -14.65 16 16 C 0.11 2.41 6.57 -83.03 -0.55 1.87 16 17 C -0.11 -2.17 7.95 -38.93 -0.31 -2.48 16 18 C -0.11 -1.81 10.16 -39.34 -0.40 -2.21 16 19 C -0.11 -1.86 9.63 -38.94 -0.38 -2.24 16 20 C 0.05 1.00 6.70 -83.03 -0.56 0.44 16 21 C 0.59 11.10 7.83 -12.16 -0.10 11.00 16 22 O -0.55 -10.96 16.64 5.36 0.09 -10.87 16 23 N -0.60 -9.89 3.33 -171.49 -0.57 -10.46 16 24 C 0.11 1.82 5.46 -3.07 -0.02 1.80 16 25 C -0.14 -1.61 6.95 -24.90 -0.17 -1.78 16 26 C -0.13 -1.38 7.08 -24.59 -0.17 -1.56 16 27 C 0.11 1.35 6.89 -2.53 -0.02 1.33 16 28 N -0.42 -8.74 6.72 -6.39 -0.04 -8.78 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.59 7.34 -51.93 -0.38 1.21 16 35 H 0.12 2.61 5.64 -51.93 -0.29 2.31 16 36 H 0.28 6.00 8.31 -40.82 -0.34 5.66 16 37 H 0.20 4.06 4.40 -52.49 -0.23 3.83 16 38 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.14 2.12 7.64 -52.48 -0.40 1.72 16 40 H 0.10 1.85 6.94 -51.93 -0.36 1.49 16 41 H 0.07 1.20 7.97 -51.93 -0.41 0.78 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.97 8.10 -51.92 -0.42 0.55 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -29.01 385.41 -7.89 -36.90 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.62 Total: 9.77 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: -1.60 Total: 17.47 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.26 Total: -48.51 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.19 Total: -33.43 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.01 -7.89 -36.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570082922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.986 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds