Wall clock time and date at job start Wed Apr 1 2020 04:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99832 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47395 * 64.99841 * 4 3 2 6 6 C 1.36770 * 120.00034 * 85.48053 * 5 4 3 7 7 H 1.08001 * 120.00433 * 221.59662 * 6 5 4 8 8 C 1.39117 * 120.00100 * 41.59941 * 6 5 4 9 9 N 1.31323 * 119.99517 * 17.78973 * 8 6 5 10 10 Si 1.86798 * 120.00373 * 197.78967 * 8 6 5 11 11 H 1.48496 * 109.47100 * 95.00357 * 10 8 6 12 12 H 1.48498 * 109.46969 * 215.00838 * 10 8 6 13 13 H 1.48498 * 109.47012 * 335.00575 * 10 8 6 14 14 C 1.34779 * 119.99535 * 265.20815 * 5 4 3 15 15 O 1.21558 * 120.00234 * 4.45066 * 14 5 4 16 16 C 1.48055 * 119.99514 * 184.44245 * 14 5 4 17 17 C 1.39734 * 119.66431 * 19.69394 * 16 14 5 18 18 C 1.38489 * 119.24172 * 179.78756 * 17 16 14 19 19 C 1.38630 * 118.56312 * 0.47510 * 18 17 16 20 20 C 1.39567 * 119.26898 * 359.74398 * 19 18 17 21 21 C 1.48222 * 119.65426 * 180.02562 * 20 19 18 22 22 O 1.21507 * 119.99777 * 4.84605 * 21 20 19 23 23 N 1.34775 * 119.99915 * 184.84768 * 21 20 19 24 24 C 1.47019 * 125.65014 * 6.09882 * 23 21 20 25 25 C 1.54321 * 107.27509 * 180.96793 * 24 23 21 26 26 C 1.55151 * 102.86281 * 22.52321 * 25 24 23 27 27 C 1.47428 * 125.64797 * 186.39956 * 23 21 20 28 28 N 1.32394 * 120.69889 * 0.02612 * 20 19 18 29 29 H 1.09000 * 109.47402 * 60.00377 * 1 2 3 30 30 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47085 * 300.00292 * 1 2 3 32 32 H 1.08997 * 109.46919 * 59.99858 * 3 2 1 33 33 H 1.09001 * 109.46883 * 299.99825 * 3 2 1 34 34 H 1.08995 * 109.47047 * 304.99425 * 4 3 2 35 35 H 1.09002 * 109.46600 * 184.99606 * 4 3 2 36 36 H 0.97000 * 119.99554 * 179.97438 * 9 8 6 37 37 H 1.07997 * 120.37345 * 0.02562 * 17 16 14 38 38 H 1.07994 * 120.72365 * 180.19475 * 18 17 16 39 39 H 1.08004 * 120.36503 * 179.72820 * 19 18 17 40 40 H 1.09007 * 109.87931 * 300.50634 * 24 23 21 41 41 H 1.08994 * 109.88728 * 61.67466 * 24 23 21 42 42 H 1.08996 * 110.91982 * 264.10215 * 25 24 23 43 43 H 1.08999 * 110.58859 * 140.78069 * 25 24 23 44 44 H 1.08999 * 111.00384 * 206.22737 * 26 25 24 45 45 H 1.09000 * 111.00913 * 82.38038 * 26 25 24 46 46 H 1.09000 * 110.36939 * 274.68086 * 27 23 21 47 47 H 1.09009 * 110.36084 * 36.88837 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1767 1.3356 -2.3642 7 1 3.8473 0.9854 -3.3313 8 6 4.8057 2.5711 -2.2492 9 7 5.5097 2.8521 -1.1768 10 14 4.6489 3.8304 -3.6199 11 1 3.5376 4.7649 -3.3088 12 1 5.9178 4.5924 -3.7396 13 1 4.3666 3.1348 -4.9012 14 6 4.1879 -0.7654 -1.3077 15 8 3.9368 -1.4614 -0.3432 16 6 4.7265 -1.3786 -2.5430 17 6 5.3914 -0.5808 -3.4779 18 6 5.8957 -1.1642 -4.6282 19 6 5.7125 -2.5255 -4.8161 20 6 5.0348 -3.2633 -3.8444 21 6 4.8347 -4.7194 -4.0363 22 8 5.3349 -5.2808 -4.9908 23 7 4.0978 -5.4206 -3.1522 24 6 3.3353 -4.8524 -2.0309 25 6 2.6743 -6.0295 -1.2831 26 6 3.5658 -7.2355 -1.6806 27 6 3.9280 -6.8850 -3.1454 28 7 4.5687 -2.6764 -2.7530 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 5.9486 3.7134 -1.0967 37 1 5.5140 0.4779 -3.3035 38 1 6.4163 -0.5708 -5.3652 39 1 6.0899 -3.0096 -5.7047 40 1 4.0064 -4.3151 -1.3608 41 1 2.5672 -4.1778 -2.4090 42 1 1.6492 -6.1793 -1.6219 43 1 2.7056 -5.8653 -0.2060 44 1 3.0056 -8.1691 -1.6293 45 1 4.4591 -7.2831 -1.0579 46 1 3.1198 -7.1764 -3.8162 47 1 4.8569 -7.3759 -3.4361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570082922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:25 Heat of formation + Delta-G solvation = -62.522444 kcal Electronic energy + Delta-G solvation = -31772.010311 eV Core-core repulsion = 27534.619259 eV Total energy + Delta-G solvation = -4237.391051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.88743 -40.79998 -39.65060 -38.48765 -38.27838 -36.80712 -33.85818 -33.58555 -32.94427 -32.27642 -30.61489 -29.86172 -27.34432 -27.09210 -26.16451 -25.36568 -23.84368 -23.24865 -22.13608 -21.42682 -20.82085 -19.35546 -18.63868 -17.91802 -17.55505 -17.22289 -17.19632 -16.94122 -16.70398 -16.47928 -16.14853 -15.96967 -15.69318 -15.59187 -15.10092 -14.76950 -14.51237 -14.34384 -14.16209 -14.02794 -13.84542 -13.54831 -13.42756 -13.27370 -13.24235 -12.83060 -12.70722 -12.60964 -12.26644 -12.21955 -12.14497 -11.98097 -11.87330 -11.67007 -11.53953 -11.08528 -10.87078 -10.59701 -10.47580 -10.21308 -10.07868 -9.66424 -9.41188 -8.32074 -6.10307 -0.37842 0.06038 1.45484 1.54369 1.55256 1.64025 1.85206 2.17250 2.25644 2.57558 2.87611 3.04705 3.15994 3.24636 3.66241 3.72285 3.90519 3.99204 4.05437 4.07060 4.18759 4.30146 4.35154 4.40548 4.46890 4.52127 4.57874 4.59046 4.64174 4.69459 4.74921 4.80800 4.90493 4.98020 5.00722 5.02730 5.10076 5.14201 5.22342 5.26140 5.27089 5.41671 5.45098 5.69925 5.97358 6.28610 6.36477 6.45929 6.63123 6.99175 7.07435 7.54416 8.00830 8.68281 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.004138 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.286921 B = 6764.597979 C = 8697.189927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.059 3.941 4 C 0.118 3.882 5 N -0.430 5.430 6 C -0.354 4.354 7 H 0.096 0.904 8 C 0.018 3.982 9 N -0.879 5.879 10 Si 0.973 3.027 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.253 1.253 14 C 0.512 3.488 15 O -0.597 6.597 16 C 0.080 3.920 17 C -0.116 4.116 18 C -0.090 4.090 19 C -0.099 4.099 20 C 0.035 3.965 21 C 0.585 3.415 22 O -0.565 6.565 23 N -0.603 5.603 24 C 0.117 3.883 25 C -0.128 4.128 26 C -0.119 4.119 27 C 0.097 3.903 28 N -0.430 5.430 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.111 0.889 36 H 0.279 0.721 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.163 0.837 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 -6.853 -3.330 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.019 4.019 4 C -0.005 4.005 5 N -0.149 5.149 6 C -0.482 4.482 7 H 0.114 0.886 8 C -0.188 4.188 9 N -0.514 5.514 10 Si 0.796 3.204 11 H -0.201 1.201 12 H -0.205 1.205 13 H -0.177 1.177 14 C 0.300 3.700 15 O -0.482 6.482 16 C -0.060 4.060 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.105 4.105 21 C 0.374 3.626 22 O -0.445 6.445 23 N -0.335 5.335 24 C -0.005 4.005 25 C -0.166 4.166 26 C -0.157 4.157 27 C -0.024 4.024 28 N -0.144 5.144 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.208 0.792 38 H 0.200 0.800 39 H 0.181 0.819 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.136 0.864 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.306 -7.975 -2.646 9.937 hybrid contribution 0.272 1.679 -0.827 1.892 sum -5.034 -6.295 -3.473 8.777 Atomic orbital electron populations 1.22834 0.80706 1.02946 1.00369 1.88100 1.20508 1.28433 1.95381 1.22925 0.94225 0.84540 1.00181 1.21481 0.91955 1.00514 0.86548 1.43179 1.56631 1.04188 1.10894 1.19651 1.38753 1.01158 0.88598 0.88618 1.26140 0.93035 0.99793 0.99784 1.69893 1.27492 1.23967 1.30058 0.85197 0.77875 0.78256 0.79022 1.20066 1.20501 1.17691 1.18286 0.81283 0.83788 0.86598 1.90582 1.56216 1.62713 1.38649 1.21141 0.99298 0.89312 0.96291 1.24313 0.91647 1.05438 0.92197 1.22125 0.97519 0.93946 0.97916 1.22437 0.95552 0.94806 0.99233 1.21180 1.01634 0.94546 0.93174 1.17642 0.78108 0.85309 0.81575 1.90698 1.52101 1.70885 1.30865 1.48456 1.46915 1.09121 1.28964 1.22073 0.94573 0.96328 0.87568 1.22714 0.99771 0.93178 1.00922 1.22790 1.00427 0.99175 0.93283 1.22538 1.02228 0.78378 0.99231 1.67580 1.16024 1.11375 1.19385 0.94089 0.89554 0.92775 0.91423 0.93422 0.93610 0.87116 0.91080 0.79223 0.79956 0.81938 0.91882 0.93431 0.89166 0.89413 0.86409 0.90743 0.90046 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.92 9.88 -148.37 -1.47 -18.38 16 3 C 0.06 2.30 6.26 71.98 0.45 2.75 16 4 C 0.12 5.44 5.47 86.38 0.47 5.91 16 5 N -0.43 -20.91 2.45 -638.61 -1.56 -22.48 16 6 C -0.35 -16.07 5.83 84.13 0.49 -15.58 16 7 H 0.10 4.24 6.31 -2.91 -0.02 4.22 16 8 C 0.02 0.79 4.81 84.98 0.41 1.20 16 9 N -0.88 -41.02 11.47 21.69 0.25 -40.77 16 10 Si 0.97 34.01 29.59 68.60 2.03 36.04 16 11 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16 12 H -0.28 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 14 C 0.51 26.28 7.34 86.85 0.64 26.92 16 15 O -0.60 -33.56 15.96 -3.29 -0.05 -33.61 16 16 C 0.08 3.68 6.57 42.02 0.28 3.95 16 17 C -0.12 -4.56 7.95 22.69 0.18 -4.38 16 18 C -0.09 -2.78 10.16 22.42 0.23 -2.55 16 19 C -0.10 -3.25 9.63 22.68 0.22 -3.03 16 20 C 0.04 1.36 6.70 42.04 0.28 1.64 16 21 C 0.59 21.96 7.83 86.90 0.68 22.64 16 22 O -0.57 -22.24 16.64 -3.74 -0.06 -22.30 16 23 N -0.60 -19.80 3.33 -814.77 -2.71 -22.51 16 24 C 0.12 3.87 5.46 86.73 0.47 4.35 16 25 C -0.13 -2.89 6.95 31.78 0.22 -2.67 16 26 C -0.12 -2.19 7.08 31.98 0.23 -1.96 16 27 C 0.10 2.33 6.89 86.85 0.60 2.93 16 28 N -0.43 -18.80 6.72 -174.12 -1.17 -19.97 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.26 7.34 -2.39 -0.02 2.24 16 35 H 0.11 5.15 5.64 -2.39 -0.01 5.14 16 36 H 0.28 12.20 8.31 -92.71 -0.77 11.43 16 37 H 0.19 7.79 4.40 -2.91 -0.01 7.78 16 38 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.16 4.54 7.64 -2.91 -0.02 4.52 16 40 H 0.06 2.54 6.94 -2.38 -0.02 2.52 16 41 H 0.05 1.74 7.97 -2.39 -0.02 1.73 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.83 8.10 -2.38 -0.02 1.81 16 Total: -1.00 -66.47 385.41 3.34 -63.13 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.99 Total: 36.64 kcal Atomic # 6 Polarization: 37.11 SS G_CDS: 7.09 Total: 44.20 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -5.20 Total: -105.72 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: -1.58 Total: -74.30 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Total: -66.47 3.34 -63.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570082922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.609 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds