Wall clock time and date at job start Wed Apr 1 2020 04:14:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42905 * 113.99832 * 2 1
4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1
5 5 N 1.46501 * 109.47395 * 64.99841 * 4 3 2
6 6 C 1.36770 * 120.00034 * 85.48053 * 5 4 3
7 7 H 1.08001 * 120.00433 * 221.59662 * 6 5 4
8 8 C 1.39117 * 120.00100 * 41.59941 * 6 5 4
9 9 N 1.31323 * 119.99517 * 17.78973 * 8 6 5
10 10 Si 1.86798 * 120.00373 * 197.78967 * 8 6 5
11 11 H 1.48496 * 109.47100 * 95.00357 * 10 8 6
12 12 H 1.48498 * 109.46969 * 215.00838 * 10 8 6
13 13 H 1.48498 * 109.47012 * 335.00575 * 10 8 6
14 14 C 1.34779 * 119.99535 * 265.20815 * 5 4 3
15 15 O 1.21558 * 120.00234 * 4.45066 * 14 5 4
16 16 C 1.48055 * 119.99514 * 184.44245 * 14 5 4
17 17 C 1.39734 * 119.66431 * 19.69394 * 16 14 5
18 18 C 1.38489 * 119.24172 * 179.78756 * 17 16 14
19 19 C 1.38630 * 118.56312 * 0.47510 * 18 17 16
20 20 C 1.39567 * 119.26898 * 359.74398 * 19 18 17
21 21 C 1.48222 * 119.65426 * 180.02562 * 20 19 18
22 22 O 1.21507 * 119.99777 * 4.84605 * 21 20 19
23 23 N 1.34775 * 119.99915 * 184.84768 * 21 20 19
24 24 C 1.47019 * 125.65014 * 6.09882 * 23 21 20
25 25 C 1.54321 * 107.27509 * 180.96793 * 24 23 21
26 26 C 1.55151 * 102.86281 * 22.52321 * 25 24 23
27 27 C 1.47428 * 125.64797 * 186.39956 * 23 21 20
28 28 N 1.32394 * 120.69889 * 0.02612 * 20 19 18
29 29 H 1.09000 * 109.47402 * 60.00377 * 1 2 3
30 30 H 1.09001 * 109.46952 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47085 * 300.00292 * 1 2 3
32 32 H 1.08997 * 109.46919 * 59.99858 * 3 2 1
33 33 H 1.09001 * 109.46883 * 299.99825 * 3 2 1
34 34 H 1.08995 * 109.47047 * 304.99425 * 4 3 2
35 35 H 1.09002 * 109.46600 * 184.99606 * 4 3 2
36 36 H 0.97000 * 119.99554 * 179.97438 * 9 8 6
37 37 H 1.07997 * 120.37345 * 0.02562 * 17 16 14
38 38 H 1.07994 * 120.72365 * 180.19475 * 18 17 16
39 39 H 1.08004 * 120.36503 * 179.72820 * 19 18 17
40 40 H 1.09007 * 109.87931 * 300.50634 * 24 23 21
41 41 H 1.08994 * 109.88728 * 61.67466 * 24 23 21
42 42 H 1.08996 * 110.91982 * 264.10215 * 25 24 23
43 43 H 1.08999 * 110.58859 * 140.78069 * 25 24 23
44 44 H 1.08999 * 111.00384 * 206.22737 * 26 25 24
45 45 H 1.09000 * 111.00913 * 82.38038 * 26 25 24
46 46 H 1.09000 * 110.36939 * 274.68086 * 27 23 21
47 47 H 1.09009 * 110.36084 * 36.88837 * 27 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9757 0.5644 -1.2527
6 6 4.1767 1.3356 -2.3642
7 1 3.8473 0.9854 -3.3313
8 6 4.8057 2.5711 -2.2492
9 7 5.5097 2.8521 -1.1768
10 14 4.6489 3.8304 -3.6199
11 1 3.5376 4.7649 -3.3088
12 1 5.9178 4.5924 -3.7396
13 1 4.3666 3.1348 -4.9012
14 6 4.1879 -0.7654 -1.3077
15 8 3.9368 -1.4614 -0.3432
16 6 4.7265 -1.3786 -2.5430
17 6 5.3914 -0.5808 -3.4779
18 6 5.8957 -1.1642 -4.6282
19 6 5.7125 -2.5255 -4.8161
20 6 5.0348 -3.2633 -3.8444
21 6 4.8347 -4.7194 -4.0363
22 8 5.3349 -5.2808 -4.9908
23 7 4.0978 -5.4206 -3.1522
24 6 3.3353 -4.8524 -2.0309
25 6 2.6743 -6.0295 -1.2831
26 6 3.5658 -7.2355 -1.6806
27 6 3.9280 -6.8850 -3.1454
28 7 4.5687 -2.6764 -2.7530
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6885 1.8464 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.8514 0.5683 0.8409
35 1 3.9784 2.1766 0.0889
36 1 5.9486 3.7134 -1.0967
37 1 5.5140 0.4779 -3.3035
38 1 6.4163 -0.5708 -5.3652
39 1 6.0899 -3.0096 -5.7047
40 1 4.0064 -4.3151 -1.3608
41 1 2.5672 -4.1778 -2.4090
42 1 1.6492 -6.1793 -1.6219
43 1 2.7056 -5.8653 -0.2060
44 1 3.0056 -8.1691 -1.6293
45 1 4.4591 -7.2831 -1.0579
46 1 3.1198 -7.1764 -3.8162
47 1 4.8569 -7.3759 -3.4361
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570082922.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:14:25
Heat of formation + Delta-G solvation = -62.522444 kcal
Electronic energy + Delta-G solvation = -31772.010311 eV
Core-core repulsion = 27534.619259 eV
Total energy + Delta-G solvation = -4237.391051 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.88743 -40.79998 -39.65060 -38.48765 -38.27838 -36.80712 -33.85818 -33.58555
-32.94427 -32.27642 -30.61489 -29.86172 -27.34432 -27.09210 -26.16451 -25.36568
-23.84368 -23.24865 -22.13608 -21.42682 -20.82085 -19.35546 -18.63868 -17.91802
-17.55505 -17.22289 -17.19632 -16.94122 -16.70398 -16.47928 -16.14853 -15.96967
-15.69318 -15.59187 -15.10092 -14.76950 -14.51237 -14.34384 -14.16209 -14.02794
-13.84542 -13.54831 -13.42756 -13.27370 -13.24235 -12.83060 -12.70722 -12.60964
-12.26644 -12.21955 -12.14497 -11.98097 -11.87330 -11.67007 -11.53953 -11.08528
-10.87078 -10.59701 -10.47580 -10.21308 -10.07868 -9.66424 -9.41188 -8.32074
-6.10307 -0.37842 0.06038 1.45484 1.54369 1.55256 1.64025 1.85206
2.17250 2.25644 2.57558 2.87611 3.04705 3.15994 3.24636 3.66241
3.72285 3.90519 3.99204 4.05437 4.07060 4.18759 4.30146 4.35154
4.40548 4.46890 4.52127 4.57874 4.59046 4.64174 4.69459 4.74921
4.80800 4.90493 4.98020 5.00722 5.02730 5.10076 5.14201 5.22342
5.26140 5.27089 5.41671 5.45098 5.69925 5.97358 6.28610 6.36477
6.45929 6.63123 6.99175 7.07435 7.54416 8.00830 8.68281
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011046 B = 0.004138 C = 0.003219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2534.286921 B = 6764.597979 C = 8697.189927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.405 6.405
3 C 0.059 3.941
4 C 0.118 3.882
5 N -0.430 5.430
6 C -0.354 4.354
7 H 0.096 0.904
8 C 0.018 3.982
9 N -0.879 5.879
10 Si 0.973 3.027
11 H -0.275 1.275
12 H -0.280 1.280
13 H -0.253 1.253
14 C 0.512 3.488
15 O -0.597 6.597
16 C 0.080 3.920
17 C -0.116 4.116
18 C -0.090 4.090
19 C -0.099 4.099
20 C 0.035 3.965
21 C 0.585 3.415
22 O -0.565 6.565
23 N -0.603 5.603
24 C 0.117 3.883
25 C -0.128 4.128
26 C -0.119 4.119
27 C 0.097 3.903
28 N -0.430 5.430
29 H 0.040 0.960
30 H 0.086 0.914
31 H 0.054 0.946
32 H 0.068 0.932
33 H 0.048 0.952
34 H 0.045 0.955
35 H 0.111 0.889
36 H 0.279 0.721
37 H 0.191 0.809
38 H 0.183 0.817
39 H 0.163 0.837
40 H 0.063 0.937
41 H 0.047 0.953
42 H 0.090 0.910
43 H 0.087 0.913
44 H 0.118 0.882
45 H 0.074 0.926
46 H 0.081 0.919
47 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.240 -6.853 -3.330 9.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.324 6.324
3 C -0.019 4.019
4 C -0.005 4.005
5 N -0.149 5.149
6 C -0.482 4.482
7 H 0.114 0.886
8 C -0.188 4.188
9 N -0.514 5.514
10 Si 0.796 3.204
11 H -0.201 1.201
12 H -0.205 1.205
13 H -0.177 1.177
14 C 0.300 3.700
15 O -0.482 6.482
16 C -0.060 4.060
17 C -0.136 4.136
18 C -0.115 4.115
19 C -0.120 4.120
20 C -0.105 4.105
21 C 0.374 3.626
22 O -0.445 6.445
23 N -0.335 5.335
24 C -0.005 4.005
25 C -0.166 4.166
26 C -0.157 4.157
27 C -0.024 4.024
28 N -0.144 5.144
29 H 0.059 0.941
30 H 0.104 0.896
31 H 0.072 0.928
32 H 0.086 0.914
33 H 0.066 0.934
34 H 0.064 0.936
35 H 0.129 0.871
36 H 0.089 0.911
37 H 0.208 0.792
38 H 0.200 0.800
39 H 0.181 0.819
40 H 0.081 0.919
41 H 0.066 0.934
42 H 0.108 0.892
43 H 0.106 0.894
44 H 0.136 0.864
45 H 0.093 0.907
46 H 0.100 0.900
47 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -5.306 -7.975 -2.646 9.937
hybrid contribution 0.272 1.679 -0.827 1.892
sum -5.034 -6.295 -3.473 8.777
Atomic orbital electron populations
1.22834 0.80706 1.02946 1.00369 1.88100 1.20508 1.28433 1.95381
1.22925 0.94225 0.84540 1.00181 1.21481 0.91955 1.00514 0.86548
1.43179 1.56631 1.04188 1.10894 1.19651 1.38753 1.01158 0.88598
0.88618 1.26140 0.93035 0.99793 0.99784 1.69893 1.27492 1.23967
1.30058 0.85197 0.77875 0.78256 0.79022 1.20066 1.20501 1.17691
1.18286 0.81283 0.83788 0.86598 1.90582 1.56216 1.62713 1.38649
1.21141 0.99298 0.89312 0.96291 1.24313 0.91647 1.05438 0.92197
1.22125 0.97519 0.93946 0.97916 1.22437 0.95552 0.94806 0.99233
1.21180 1.01634 0.94546 0.93174 1.17642 0.78108 0.85309 0.81575
1.90698 1.52101 1.70885 1.30865 1.48456 1.46915 1.09121 1.28964
1.22073 0.94573 0.96328 0.87568 1.22714 0.99771 0.93178 1.00922
1.22790 1.00427 0.99175 0.93283 1.22538 1.02228 0.78378 0.99231
1.67580 1.16024 1.11375 1.19385 0.94089 0.89554 0.92775 0.91423
0.93422 0.93610 0.87116 0.91080 0.79223 0.79956 0.81938 0.91882
0.93431 0.89166 0.89413 0.86409 0.90743 0.90046 0.90639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.83 11.01 113.37 1.25 2.08 16
2 O -0.40 -16.92 9.88 -148.37 -1.47 -18.38 16
3 C 0.06 2.30 6.26 71.98 0.45 2.75 16
4 C 0.12 5.44 5.47 86.38 0.47 5.91 16
5 N -0.43 -20.91 2.45 -638.61 -1.56 -22.48 16
6 C -0.35 -16.07 5.83 84.13 0.49 -15.58 16
7 H 0.10 4.24 6.31 -2.91 -0.02 4.22 16
8 C 0.02 0.79 4.81 84.98 0.41 1.20 16
9 N -0.88 -41.02 11.47 21.69 0.25 -40.77 16
10 Si 0.97 34.01 29.59 68.60 2.03 36.04 16
11 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16
12 H -0.28 -9.75 7.11 99.48 0.71 -9.04 16
13 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16
14 C 0.51 26.28 7.34 86.85 0.64 26.92 16
15 O -0.60 -33.56 15.96 -3.29 -0.05 -33.61 16
16 C 0.08 3.68 6.57 42.02 0.28 3.95 16
17 C -0.12 -4.56 7.95 22.69 0.18 -4.38 16
18 C -0.09 -2.78 10.16 22.42 0.23 -2.55 16
19 C -0.10 -3.25 9.63 22.68 0.22 -3.03 16
20 C 0.04 1.36 6.70 42.04 0.28 1.64 16
21 C 0.59 21.96 7.83 86.90 0.68 22.64 16
22 O -0.57 -22.24 16.64 -3.74 -0.06 -22.30 16
23 N -0.60 -19.80 3.33 -814.77 -2.71 -22.51 16
24 C 0.12 3.87 5.46 86.73 0.47 4.35 16
25 C -0.13 -2.89 6.95 31.78 0.22 -2.67 16
26 C -0.12 -2.19 7.08 31.98 0.23 -1.96 16
27 C 0.10 2.33 6.89 86.85 0.60 2.93 16
28 N -0.43 -18.80 6.72 -174.12 -1.17 -19.97 16
29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
34 H 0.05 2.26 7.34 -2.39 -0.02 2.24 16
35 H 0.11 5.15 5.64 -2.39 -0.01 5.14 16
36 H 0.28 12.20 8.31 -92.71 -0.77 11.43 16
37 H 0.19 7.79 4.40 -2.91 -0.01 7.78 16
38 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16
39 H 0.16 4.54 7.64 -2.91 -0.02 4.52 16
40 H 0.06 2.54 6.94 -2.38 -0.02 2.52 16
41 H 0.05 1.74 7.97 -2.39 -0.02 1.73 16
42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
44 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
47 H 0.08 1.83 8.10 -2.38 -0.02 1.81 16
Total: -1.00 -66.47 385.41 3.34 -63.13
By element:
Atomic # 1 Polarization: 35.65 SS G_CDS: 0.99 Total: 36.64 kcal
Atomic # 6 Polarization: 37.11 SS G_CDS: 7.09 Total: 44.20 kcal
Atomic # 7 Polarization: -100.52 SS G_CDS: -5.20 Total: -105.72 kcal
Atomic # 8 Polarization: -72.72 SS G_CDS: -1.58 Total: -74.30 kcal
Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal
Total: -66.47 3.34 -63.13 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570082922.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.609 kcal
(2) G-P(sol) polarization free energy of solvation -66.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds