Wall clock time and date at job start Wed Apr 1 2020 04:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46495 * 120.00132 * 2 1 4 4 C 1.50704 * 109.47215 * 275.00100 * 3 2 1 5 5 O 1.21285 * 119.99619 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00327 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00378 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.46211 * 35.02156 * 7 6 4 9 9 C 1.53045 * 109.46136 * 275.06946 * 7 6 4 10 10 C 1.53188 * 109.31703 * 178.61331 * 9 7 6 11 11 N 1.46927 * 108.77630 * 54.63325 * 10 9 7 12 12 C 1.36933 * 120.63125 * 126.36991 * 11 10 9 13 13 H 1.08001 * 120.00480 * 331.85991 * 12 11 10 14 14 C 1.38815 * 119.99720 * 151.86210 * 12 11 10 15 15 N 1.31614 * 120.00148 * 343.06243 * 14 12 11 16 16 Si 1.86802 * 119.99773 * 163.06279 * 14 12 11 17 17 H 1.48500 * 109.47298 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46957 * 120.00206 * 16 14 12 19 19 H 1.48494 * 109.47303 * 239.99752 * 16 14 12 20 20 C 1.46928 * 118.73704 * 306.39171 * 11 10 9 21 21 C 1.53038 * 109.46299 * 155.00210 * 7 6 4 22 22 C 1.53001 * 109.49375 * 301.33034 * 21 7 6 23 23 C 1.52991 * 109.50106 * 61.43075 * 21 7 6 24 24 S 1.65607 * 119.99807 * 179.97438 * 2 1 3 25 25 C 1.81400 * 104.45105 * 269.99797 * 24 2 1 26 26 O 1.42100 * 104.27268 * 153.92585 * 24 2 1 27 27 O 1.42104 * 104.27488 * 26.07238 * 24 2 1 28 28 H 1.09005 * 109.47151 * 269.99858 * 1 2 3 29 29 H 1.09000 * 109.47488 * 29.99573 * 1 2 3 30 30 H 1.09001 * 109.47555 * 150.00409 * 1 2 3 31 31 H 1.09001 * 109.47314 * 35.00331 * 3 2 1 32 32 H 1.09002 * 109.47260 * 155.00209 * 3 2 1 33 33 H 0.97004 * 119.99692 * 0.02562 * 6 4 3 34 34 H 1.09010 * 109.49220 * 298.56470 * 9 7 6 35 35 H 1.08998 * 109.49919 * 58.65420 * 9 7 6 36 36 H 1.08999 * 109.58499 * 294.84760 * 10 9 7 37 37 H 1.09001 * 109.70306 * 174.48990 * 10 9 7 38 38 H 0.97007 * 120.00276 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.58842 * 293.82125 * 20 11 10 40 40 H 1.09004 * 109.70496 * 173.46145 * 20 11 10 41 41 H 1.09000 * 109.46765 * 60.00426 * 22 21 7 42 42 H 1.09006 * 109.47359 * 179.97438 * 22 21 7 43 43 H 1.08993 * 109.47493 * 300.00496 * 22 21 7 44 44 H 1.09004 * 109.47118 * 60.00572 * 23 21 7 45 45 H 1.09000 * 109.47247 * 180.02562 * 23 21 7 46 46 H 1.08998 * 109.47580 * 300.00257 * 23 21 7 47 47 H 1.09000 * 109.47110 * 300.00378 * 25 24 2 48 48 H 1.08997 * 109.46944 * 59.99947 * 25 24 2 49 49 H 1.08998 * 109.46676 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 8 1.8773 1.1235 -2.3337 6 7 2.9858 2.9236 -1.6609 7 6 3.1252 3.4070 -3.0367 8 1 2.2327 3.1462 -3.6054 9 6 4.3499 2.7565 -3.6841 10 6 4.4727 3.2375 -5.1332 11 7 4.4934 4.7066 -5.1437 12 6 5.5047 5.3857 -5.7693 13 1 6.4830 4.9367 -5.8574 14 6 5.2724 6.6512 -6.2903 15 7 4.0388 7.0651 -6.4883 16 14 6.7107 7.7667 -6.7103 17 1 7.9847 7.0710 -6.3973 18 1 6.6720 8.1007 -8.1568 19 1 6.6186 9.0151 -5.9116 20 6 3.4087 5.4333 -4.4697 21 6 3.2980 4.9276 -3.0279 22 6 2.0881 5.5750 -2.3512 23 6 4.5697 5.2926 -2.2596 24 16 2.2929 -1.4342 0.0006 25 6 2.5193 -1.8255 1.7574 26 8 3.5394 -1.1194 -0.6048 27 8 1.3968 -2.3564 -0.6042 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5895 32 1 3.1857 1.1176 0.4343 33 1 3.3573 3.4370 -0.9264 34 1 5.2461 3.0370 -3.1304 35 1 4.2368 1.6725 -3.6689 36 1 3.6199 2.8801 -5.7104 37 1 5.3955 2.8560 -5.5702 38 1 3.8764 7.9497 -6.8520 39 1 2.4692 5.2548 -4.9928 40 1 3.6281 6.5010 -4.4666 41 1 2.0080 5.2127 -1.3263 42 1 2.2118 6.6580 -2.3447 43 1 1.1829 5.3156 -2.9000 44 1 5.4312 4.8321 -2.7432 45 1 4.6921 6.3757 -2.2532 46 1 4.4917 4.9301 -1.2346 47 1 3.0866 -1.0278 2.2371 48 1 1.5451 -1.9178 2.2375 49 1 3.0626 -2.7655 1.8531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570394022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:11 Heat of formation + Delta-G solvation = -74.454822 kcal Electronic energy + Delta-G solvation = -30666.065339 eV Core-core repulsion = 26563.600812 eV Total energy + Delta-G solvation = -4102.464527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.02770 -38.26703 -37.35520 -36.19274 -35.87197 -34.50893 -32.81669 -31.97856 -29.89723 -29.80310 -28.56666 -26.75129 -25.94835 -25.65829 -24.50948 -22.26667 -20.56991 -20.28622 -19.19949 -18.31017 -17.91170 -17.34161 -16.82320 -16.50547 -16.21680 -15.52466 -15.01690 -14.79216 -14.60536 -14.31983 -13.95260 -13.82401 -13.60444 -13.59108 -13.42077 -13.26839 -13.07963 -12.97182 -12.68331 -12.50018 -12.26661 -12.24428 -11.83550 -11.75223 -11.62057 -11.46997 -11.30767 -11.26117 -11.02444 -10.86063 -10.64642 -10.56423 -10.22969 -10.13108 -10.04334 -9.91874 -9.65291 -9.48127 -9.06336 -8.60680 -8.42479 -6.63503 -5.77034 -3.18632 -0.08283 2.27693 2.80623 3.36669 3.40167 3.46193 3.48199 3.68405 3.82174 4.21511 4.46574 4.51297 4.53320 4.83994 4.88497 5.03765 5.18116 5.24005 5.26238 5.30910 5.44186 5.58788 5.59553 5.63124 5.66347 5.92332 5.98535 6.07444 6.09236 6.14776 6.27321 6.33636 6.43575 6.51075 6.58203 6.67522 6.76009 6.89075 6.98576 7.04179 7.09634 7.34873 7.63650 7.77272 7.83508 8.45695 8.47486 9.23657 9.86947 10.44388 11.31644 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.002602 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.054409 B =10759.592113 C =11098.692971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.984 5.984 3 C 0.105 3.895 4 C 0.491 3.509 5 O -0.528 6.528 6 N -0.720 5.720 7 C 0.165 3.835 8 H 0.080 0.920 9 C -0.143 4.143 10 C 0.147 3.853 11 N -0.590 5.590 12 C -0.247 4.247 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.187 3.813 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.126 4.126 24 S 2.610 3.390 25 C -0.676 4.676 26 O -0.943 6.943 27 O -0.949 6.949 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.029 0.971 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -11.534 22.093 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.820 5.820 3 C -0.025 4.025 4 C 0.275 3.725 5 O -0.404 6.404 6 N -0.372 5.372 7 C 0.061 3.939 8 H 0.098 0.902 9 C -0.183 4.183 10 C 0.020 3.980 11 N -0.312 5.312 12 C -0.377 4.377 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.729 3.271 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.060 3.940 21 C -0.100 4.100 22 C -0.190 4.190 23 C -0.184 4.184 24 S 2.701 3.299 25 C -0.825 4.825 26 O -0.933 6.933 27 O -0.940 6.940 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.149 -12.332 20.586 24.772 hybrid contribution 0.759 1.108 0.866 1.598 sum -5.390 -11.224 21.452 24.803 Atomic orbital electron populations 1.21573 0.77768 1.05153 1.01218 1.57053 1.15510 1.20010 1.89465 1.21137 0.98445 0.87215 0.95678 1.20982 0.78569 0.81426 0.91566 1.90716 1.47917 1.55926 1.45809 1.46306 1.57270 1.23217 1.10414 1.20983 0.98914 0.93450 0.80558 0.90211 1.22440 0.97554 0.99145 0.99199 1.20883 0.99017 0.85838 0.92263 1.44059 1.26887 0.99149 1.61077 1.19206 0.89640 0.98868 1.29975 0.91678 1.25025 0.95984 0.99912 0.98695 1.70034 1.18011 1.19093 1.47598 0.86266 0.82311 0.80847 0.77639 1.20282 1.21812 1.21652 1.20804 0.90210 0.98210 0.84731 1.21572 0.94830 0.92720 1.00897 1.21749 0.97801 1.00505 0.98970 1.21739 0.98448 1.01288 0.96888 1.05074 0.74172 0.73379 0.77267 1.30623 1.11636 1.12083 1.28200 1.93650 1.44072 1.82621 1.72961 1.93597 1.64648 1.62434 1.73284 0.92851 0.90441 0.89601 0.87418 0.87402 0.77073 0.91842 0.92571 0.96315 0.92599 0.93738 0.96371 0.88977 0.93882 0.92673 0.93141 0.91060 0.93013 0.95170 0.85430 0.85433 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.65 59.84 0.64 1.31 16 2 N -0.98 -8.92 2.61 -123.05 -0.32 -9.24 16 3 C 0.11 0.90 5.72 -5.19 -0.03 0.87 16 4 C 0.49 6.88 7.86 -10.99 -0.09 6.80 16 5 O -0.53 -9.88 16.08 5.55 0.09 -9.79 16 6 N -0.72 -9.73 4.29 -53.77 -0.23 -9.96 16 7 C 0.16 2.86 1.57 -67.89 -0.11 2.75 16 8 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 9 C -0.14 -2.71 5.31 -26.61 -0.14 -2.85 16 10 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 11 N -0.59 -14.48 2.43 -172.31 -0.42 -14.90 16 12 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 13 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 16 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.19 4.29 3.98 -3.71 -0.01 4.28 16 21 C -0.10 -1.71 0.56 -154.39 -0.09 -1.80 16 22 C -0.13 -1.98 8.31 37.16 0.31 -1.67 16 23 C -0.13 -2.08 7.83 37.15 0.29 -1.78 16 24 S 2.61 25.62 6.01 -107.50 -0.65 24.97 16 25 C -0.68 -2.99 10.99 101.05 1.11 -1.88 16 26 O -0.94 -13.09 16.99 -57.54 -0.98 -14.07 16 27 O -0.95 -12.65 16.57 -57.54 -0.95 -13.60 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.09 0.76 6.91 -51.93 -0.36 0.41 16 31 H 0.11 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.11 0.68 7.61 -51.93 -0.40 0.28 16 33 H 0.39 4.16 6.66 -40.82 -0.27 3.89 16 34 H 0.06 1.17 6.34 -51.92 -0.33 0.84 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 41 H 0.04 0.52 7.36 -51.93 -0.38 0.14 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 47 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 48 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -37.28 393.67 -8.43 -45.71 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.13 Total: 1.31 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 1.63 Total: 2.39 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.35 Total: -59.30 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.84 Total: -37.46 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 16 Polarization: 25.62 SS G_CDS: -0.65 Total: 24.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.28 -8.43 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570394022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.743 kcal (2) G-P(sol) polarization free energy of solvation -37.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds