Wall clock time and date at job start Wed Apr 1 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99982 * 2 1 4 4 C 1.50699 * 109.46824 * 85.00122 * 3 2 1 5 5 O 1.21282 * 120.00601 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99823 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00003 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.44672 * 325.03607 * 7 6 4 9 9 C 1.53043 * 109.45838 * 85.00037 * 7 6 4 10 10 C 1.53194 * 109.30962 * 181.38571 * 9 7 6 11 11 N 1.46924 * 108.77727 * 305.36495 * 10 9 7 12 12 C 1.36939 * 120.62780 * 233.58989 * 11 10 9 13 13 H 1.07995 * 120.00585 * 25.20053 * 12 11 10 14 14 C 1.38811 * 119.99469 * 205.19911 * 12 11 10 15 15 N 1.31627 * 119.99946 * 202.59569 * 14 12 11 16 16 Si 1.86797 * 120.00421 * 22.59592 * 14 12 11 17 17 H 1.48498 * 109.47288 * 264.61541 * 16 14 12 18 18 H 1.48497 * 109.47014 * 24.61392 * 16 14 12 19 19 H 1.48495 * 109.47369 * 144.61319 * 16 14 12 20 20 C 1.46924 * 118.73873 * 53.86107 * 11 10 9 21 21 C 1.53037 * 109.45842 * 205.06599 * 7 6 4 22 22 C 1.52995 * 109.50060 * 298.56432 * 21 7 6 23 23 C 1.53002 * 109.49691 * 58.66782 * 21 7 6 24 24 S 1.65604 * 119.99998 * 179.97438 * 2 1 3 25 25 C 1.81402 * 104.44839 * 270.00061 * 24 2 1 26 26 O 1.42103 * 104.27559 * 26.07435 * 24 2 1 27 27 O 1.42097 * 104.27726 * 153.92843 * 24 2 1 28 28 H 1.09001 * 109.46815 * 89.99581 * 1 2 3 29 29 H 1.08995 * 109.47031 * 209.99548 * 1 2 3 30 30 H 1.09003 * 109.47087 * 330.00012 * 1 2 3 31 31 H 1.08996 * 109.47549 * 324.99828 * 3 2 1 32 32 H 1.09008 * 109.46926 * 204.99790 * 3 2 1 33 33 H 0.97001 * 119.99707 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.49711 * 61.43579 * 9 7 6 35 35 H 1.09000 * 109.52604 * 301.35074 * 9 7 6 36 36 H 1.09004 * 109.58480 * 185.57771 * 10 9 7 37 37 H 1.08998 * 109.58521 * 65.15393 * 10 9 7 38 38 H 0.97003 * 119.99683 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.58657 * 65.92501 * 20 11 10 40 40 H 1.09000 * 109.58412 * 186.35512 * 20 11 10 41 41 H 1.09007 * 109.47000 * 60.00159 * 22 21 7 42 42 H 1.09001 * 109.47233 * 179.97438 * 22 21 7 43 43 H 1.09000 * 109.47353 * 300.00084 * 22 21 7 44 44 H 1.08997 * 109.47381 * 59.99583 * 23 21 7 45 45 H 1.09003 * 109.47327 * 180.02562 * 23 21 7 46 46 H 1.09006 * 109.46893 * 299.99417 * 23 21 7 47 47 H 1.09000 * 109.46879 * 60.00520 * 25 24 2 48 48 H 1.09004 * 109.46571 * 179.97438 * 25 24 2 49 49 H 1.08999 * 109.47084 * 299.99733 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 8 1.8774 1.1235 2.3338 6 7 2.9858 2.9237 1.6609 7 6 3.1252 3.4070 3.0368 8 1 2.2331 3.1451 3.6056 9 6 4.3510 2.7578 3.6835 10 6 4.4737 3.2389 5.1327 11 7 4.4928 4.7079 5.1434 12 6 5.5031 5.3880 5.7695 13 1 6.4683 4.9215 5.8999 14 6 5.2865 6.6771 6.2364 15 7 6.3054 7.4893 6.4233 16 14 3.5492 7.2595 6.5996 17 1 3.0139 7.9859 5.4202 18 1 2.6856 6.0878 6.8932 19 1 3.5670 8.1679 7.7742 20 6 3.4041 5.4334 4.4748 21 6 3.2963 4.9278 3.0280 22 6 4.5673 5.2943 2.2593 23 6 2.0854 5.5740 2.3519 24 16 2.2930 -1.4342 0.0006 25 6 2.5193 -1.8254 1.7575 26 8 1.3969 -2.3564 -0.6043 27 8 3.5394 -1.1194 -0.6047 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0043 -0.5894 32 1 3.1858 1.1177 -0.4343 33 1 3.3572 3.4370 0.9264 34 1 5.2466 3.0394 3.1296 35 1 4.2397 1.6736 3.6683 36 1 5.3982 2.8583 5.5670 37 1 3.6216 2.8803 5.7101 38 1 6.1540 8.3902 6.7493 39 1 2.4665 5.2501 4.9996 40 1 3.6226 6.5013 4.4747 41 1 4.4893 4.9318 1.2343 42 1 4.6885 6.3776 2.2530 43 1 5.4295 4.8347 2.7426 44 1 1.1807 5.3135 2.9011 45 1 2.2079 6.6571 2.3455 46 1 2.0053 5.2117 1.3270 47 1 1.5450 -1.9178 2.2375 48 1 3.0618 -2.7659 1.8532 49 1 3.0866 -1.0278 2.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570394023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:16 Heat of formation + Delta-G solvation = -70.853731 kcal Electronic energy + Delta-G solvation = -30898.000819 eV Core-core repulsion = 26795.692448 eV Total energy + Delta-G solvation = -4102.308372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.35127 -38.62851 -37.43611 -36.35404 -35.96085 -34.82233 -33.11538 -32.14761 -30.46426 -29.61610 -28.86639 -26.97825 -26.34544 -25.77718 -24.59301 -22.73048 -20.69345 -20.55473 -19.30723 -18.67055 -18.02404 -17.61109 -16.94414 -16.61472 -16.34578 -15.78734 -15.26145 -15.02472 -14.70680 -14.49238 -14.40508 -13.89298 -13.76411 -13.62826 -13.48594 -13.34328 -13.26645 -13.01734 -12.86441 -12.59973 -12.49212 -12.38038 -12.13463 -11.93779 -11.83750 -11.80467 -11.75923 -11.31977 -11.29280 -11.17587 -10.84479 -10.74990 -10.50125 -10.36241 -10.22764 -9.95916 -9.78980 -9.49415 -9.24258 -8.88378 -8.66346 -7.06037 -5.99782 -3.32833 -0.01556 2.18530 2.48898 3.14903 3.26508 3.45288 3.46993 3.57111 3.86058 4.23410 4.47894 4.59207 4.66087 4.76395 4.84863 4.90936 4.94062 4.99044 5.18041 5.19778 5.25569 5.37013 5.45190 5.53978 5.61897 5.62954 5.66474 5.77320 5.85912 5.94349 6.01681 6.02894 6.15002 6.21303 6.24732 6.34066 6.40821 6.52218 6.56474 6.62981 6.66982 6.75943 6.96598 7.47810 7.88592 8.12906 8.27283 8.88460 9.67320 10.03661 11.15938 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.002809 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244553 B = 9967.287831 C =10290.511797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.983 5.983 3 C 0.094 3.906 4 C 0.485 3.515 5 O -0.537 6.537 6 N -0.716 5.716 7 C 0.163 3.837 8 H 0.083 0.917 9 C -0.145 4.145 10 C 0.151 3.849 11 N -0.603 5.603 12 C -0.257 4.257 13 H 0.087 0.913 14 C 0.024 3.976 15 N -0.905 5.905 16 Si 0.875 3.125 17 H -0.289 1.289 18 H -0.270 1.270 19 H -0.303 1.303 20 C 0.141 3.859 21 C -0.090 4.090 22 C -0.130 4.130 23 C -0.139 4.139 24 S 2.611 3.389 25 C -0.660 4.660 26 O -0.957 6.957 27 O -0.958 6.958 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.129 0.871 48 H 0.122 0.878 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -13.004 -14.675 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.819 5.819 3 C -0.036 4.036 4 C 0.269 3.731 5 O -0.415 6.415 6 N -0.368 5.368 7 C 0.059 3.941 8 H 0.101 0.899 9 C -0.185 4.185 10 C 0.024 3.976 11 N -0.325 5.325 12 C -0.385 4.385 13 H 0.105 0.895 14 C -0.175 4.175 15 N -0.548 5.548 16 Si 0.705 3.295 17 H -0.217 1.217 18 H -0.195 1.195 19 H -0.232 1.232 20 C 0.015 3.985 21 C -0.093 4.093 22 C -0.187 4.187 23 C -0.197 4.197 24 S 2.705 3.295 25 C -0.810 4.810 26 O -0.947 6.947 27 O -0.948 6.948 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.148 0.852 48 H 0.141 0.859 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.636 -13.788 -14.695 22.785 hybrid contribution -0.930 1.019 0.774 1.581 sum -11.566 -12.770 -13.921 22.150 Atomic orbital electron populations 1.21445 0.77620 1.03466 1.01979 1.57076 1.15455 1.19989 1.89341 1.21316 1.00200 0.87344 0.94730 1.21318 0.78278 0.81640 0.91910 1.90687 1.48288 1.56427 1.46055 1.46324 1.56851 1.23222 1.10416 1.20983 0.99084 0.93149 0.80890 0.89913 1.22458 0.97844 0.99069 0.99151 1.20887 0.99739 0.84395 0.92574 1.44381 1.26435 1.00412 1.61306 1.18906 0.90698 0.97309 1.31633 0.89532 1.25211 0.96545 0.96484 0.99233 1.69858 1.30061 1.06445 1.48455 0.87064 0.87036 0.78238 0.77122 1.21713 1.19517 1.23156 1.21466 0.91193 0.97170 0.88691 1.21452 0.95687 0.93126 0.98994 1.21765 0.97914 1.01881 0.97161 1.21828 0.97454 1.00760 0.99655 1.04906 0.73737 0.73085 0.77819 1.30442 1.12215 1.11801 1.26587 1.93605 1.64720 1.62221 1.74187 1.93592 1.44019 1.82944 1.74290 0.92158 0.90994 0.90871 0.86904 0.85789 0.76554 0.91182 0.92431 0.91590 0.95855 0.92785 0.95586 0.90494 0.94554 0.92618 0.90518 0.93038 0.92472 0.93083 0.85236 0.85921 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.20 59.85 0.61 1.33 16 2 N -0.98 -8.41 2.61 -123.05 -0.32 -8.73 16 3 C 0.09 0.73 6.12 -5.19 -0.03 0.70 16 4 C 0.48 5.22 7.86 -10.98 -0.09 5.13 16 5 O -0.54 -7.27 14.67 5.56 0.08 -7.19 16 6 N -0.72 -7.77 4.29 -53.76 -0.23 -8.00 16 7 C 0.16 2.33 1.57 -67.89 -0.11 2.23 16 8 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 9 C -0.15 -2.26 5.31 -26.61 -0.14 -2.40 16 10 C 0.15 2.83 6.51 -3.71 -0.02 2.81 16 11 N -0.60 -13.37 2.23 -172.05 -0.38 -13.75 16 12 C -0.26 -6.83 10.05 -15.06 -0.15 -6.98 16 13 H 0.09 2.46 8.04 -52.49 -0.42 2.04 16 14 C 0.02 0.67 5.21 -17.43 -0.09 0.58 16 15 N -0.91 -26.90 13.97 55.49 0.78 -26.13 16 16 Si 0.87 21.62 24.36 -169.99 -4.14 17.48 16 17 H -0.29 -6.86 6.68 56.52 0.38 -6.48 16 18 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 19 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 20 C 0.14 2.86 2.93 -3.48 -0.01 2.85 16 21 C -0.09 -1.39 0.56 -154.16 -0.09 -1.48 16 22 C -0.13 -1.97 7.84 37.16 0.29 -1.68 16 23 C -0.14 -1.81 8.31 37.16 0.31 -1.50 16 24 S 2.61 25.04 6.02 -107.50 -0.65 24.40 16 25 C -0.66 -5.40 10.52 101.05 1.06 -4.34 16 26 O -0.96 -11.47 17.09 -57.54 -0.98 -12.46 16 27 O -0.96 -11.62 16.53 -57.54 -0.95 -12.57 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.11 0.58 8.11 -51.93 -0.42 0.15 16 32 H 0.12 0.90 6.82 -51.92 -0.35 0.55 16 33 H 0.40 3.44 6.66 -40.82 -0.27 3.17 16 34 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.03 0.54 7.09 -51.93 -0.37 0.17 16 40 H 0.08 1.74 4.36 -51.93 -0.23 1.51 16 41 H 0.04 0.42 6.58 -51.92 -0.34 0.08 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 47 H 0.13 0.97 8.14 -51.92 -0.42 0.54 16 48 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 49 H 0.13 1.26 7.22 -51.92 -0.37 0.89 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -34.54 384.42 -7.47 -42.00 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.00 Total: 1.90 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 1.54 Total: -2.74 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.16 Total: -56.61 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.85 Total: -32.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Atomic # 16 Polarization: 25.04 SS G_CDS: -0.65 Total: 24.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.54 -7.47 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570394023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.853 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds