Wall clock time and date at job start Wed Apr 1 2020 04:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99982 * 2 1 4 4 C 1.50699 * 109.46824 * 85.00122 * 3 2 1 5 5 O 1.21282 * 120.00601 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99823 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00003 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.44672 * 325.03607 * 7 6 4 9 9 C 1.53043 * 109.45838 * 85.00037 * 7 6 4 10 10 C 1.53194 * 109.30962 * 181.38571 * 9 7 6 11 11 N 1.46924 * 108.77727 * 305.36495 * 10 9 7 12 12 C 1.36939 * 120.62780 * 233.58989 * 11 10 9 13 13 H 1.07995 * 120.00585 * 25.20053 * 12 11 10 14 14 C 1.38811 * 119.99469 * 205.19911 * 12 11 10 15 15 N 1.31627 * 119.99946 * 202.59569 * 14 12 11 16 16 Si 1.86797 * 120.00421 * 22.59592 * 14 12 11 17 17 H 1.48498 * 109.47288 * 264.61541 * 16 14 12 18 18 H 1.48497 * 109.47014 * 24.61392 * 16 14 12 19 19 H 1.48495 * 109.47369 * 144.61319 * 16 14 12 20 20 C 1.46924 * 118.73873 * 53.86107 * 11 10 9 21 21 C 1.53037 * 109.45842 * 205.06599 * 7 6 4 22 22 C 1.52995 * 109.50060 * 298.56432 * 21 7 6 23 23 C 1.53002 * 109.49691 * 58.66782 * 21 7 6 24 24 S 1.65604 * 119.99998 * 179.97438 * 2 1 3 25 25 C 1.81402 * 104.44839 * 270.00061 * 24 2 1 26 26 O 1.42103 * 104.27559 * 26.07435 * 24 2 1 27 27 O 1.42097 * 104.27726 * 153.92843 * 24 2 1 28 28 H 1.09001 * 109.46815 * 89.99581 * 1 2 3 29 29 H 1.08995 * 109.47031 * 209.99548 * 1 2 3 30 30 H 1.09003 * 109.47087 * 330.00012 * 1 2 3 31 31 H 1.08996 * 109.47549 * 324.99828 * 3 2 1 32 32 H 1.09008 * 109.46926 * 204.99790 * 3 2 1 33 33 H 0.97001 * 119.99707 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.49711 * 61.43579 * 9 7 6 35 35 H 1.09000 * 109.52604 * 301.35074 * 9 7 6 36 36 H 1.09004 * 109.58480 * 185.57771 * 10 9 7 37 37 H 1.08998 * 109.58521 * 65.15393 * 10 9 7 38 38 H 0.97003 * 119.99683 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.58657 * 65.92501 * 20 11 10 40 40 H 1.09000 * 109.58412 * 186.35512 * 20 11 10 41 41 H 1.09007 * 109.47000 * 60.00159 * 22 21 7 42 42 H 1.09001 * 109.47233 * 179.97438 * 22 21 7 43 43 H 1.09000 * 109.47353 * 300.00084 * 22 21 7 44 44 H 1.08997 * 109.47381 * 59.99583 * 23 21 7 45 45 H 1.09003 * 109.47327 * 180.02562 * 23 21 7 46 46 H 1.09006 * 109.46893 * 299.99417 * 23 21 7 47 47 H 1.09000 * 109.46879 * 60.00520 * 25 24 2 48 48 H 1.09004 * 109.46571 * 179.97438 * 25 24 2 49 49 H 1.08999 * 109.47084 * 299.99733 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 8 1.8774 1.1235 2.3338 6 7 2.9858 2.9237 1.6609 7 6 3.1252 3.4070 3.0368 8 1 2.2331 3.1451 3.6056 9 6 4.3510 2.7578 3.6835 10 6 4.4737 3.2389 5.1327 11 7 4.4928 4.7079 5.1434 12 6 5.5031 5.3880 5.7695 13 1 6.4683 4.9215 5.8999 14 6 5.2865 6.6771 6.2364 15 7 6.3054 7.4893 6.4233 16 14 3.5492 7.2595 6.5996 17 1 3.0139 7.9859 5.4202 18 1 2.6856 6.0878 6.8932 19 1 3.5670 8.1679 7.7742 20 6 3.4041 5.4334 4.4748 21 6 3.2963 4.9278 3.0280 22 6 4.5673 5.2943 2.2593 23 6 2.0854 5.5740 2.3519 24 16 2.2930 -1.4342 0.0006 25 6 2.5193 -1.8254 1.7575 26 8 1.3969 -2.3564 -0.6043 27 8 3.5394 -1.1194 -0.6047 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6502 2.0043 -0.5894 32 1 3.1858 1.1177 -0.4343 33 1 3.3572 3.4370 0.9264 34 1 5.2466 3.0394 3.1296 35 1 4.2397 1.6736 3.6683 36 1 5.3982 2.8583 5.5670 37 1 3.6216 2.8803 5.7101 38 1 6.1540 8.3902 6.7493 39 1 2.4665 5.2501 4.9996 40 1 3.6226 6.5013 4.4747 41 1 4.4893 4.9318 1.2343 42 1 4.6885 6.3776 2.2530 43 1 5.4295 4.8347 2.7426 44 1 1.1807 5.3135 2.9011 45 1 2.2079 6.6571 2.3455 46 1 2.0053 5.2117 1.3270 47 1 1.5450 -1.9178 2.2375 48 1 3.0618 -2.7659 1.8532 49 1 3.0866 -1.0278 2.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570394023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:14 Heat of formation + Delta-G solvation = -97.612394 kcal Electronic energy + Delta-G solvation = -30899.161162 eV Core-core repulsion = 26795.692448 eV Total energy + Delta-G solvation = -4103.468714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.41237 -39.78983 -38.26174 -37.16283 -36.78442 -36.19695 -34.32170 -33.93472 -31.96560 -30.27550 -29.65449 -28.17894 -27.71822 -26.94215 -25.79771 -24.17454 -22.17044 -21.57173 -20.19899 -19.79444 -19.01818 -18.70900 -18.14791 -17.53688 -17.22700 -17.08442 -16.58828 -16.09006 -16.02088 -15.57770 -15.46253 -15.20324 -15.00971 -14.78375 -14.48096 -14.25575 -14.21825 -14.05439 -13.89988 -13.78601 -13.63179 -13.39412 -13.22300 -13.19607 -12.99582 -12.83001 -12.65253 -12.58691 -12.48929 -12.36005 -12.27707 -12.05649 -12.03721 -11.81893 -11.51821 -11.39793 -11.21245 -11.11504 -10.68067 -9.97888 -9.89534 -8.95243 -8.15059 -5.43099 -0.73044 1.27435 1.41069 1.48209 1.50575 1.67547 2.27197 2.41120 2.85497 3.05283 3.13148 3.34272 3.63644 3.66000 3.86523 3.93241 3.97917 4.08503 4.13055 4.31374 4.32935 4.38458 4.49628 4.50677 4.60240 4.69412 4.76749 4.80423 4.85482 4.88191 4.91195 4.96710 5.01944 5.03140 5.03542 5.08090 5.14442 5.23468 5.35848 5.39748 5.43387 5.58581 5.67728 5.87208 6.13696 6.65032 6.91872 7.31072 7.63910 8.03432 9.04662 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.002809 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.244553 B = 9967.287831 C =10290.511797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.985 5.985 3 C 0.096 3.904 4 C 0.486 3.514 5 O -0.565 6.565 6 N -0.707 5.707 7 C 0.176 3.824 8 H 0.070 0.930 9 C -0.134 4.134 10 C 0.146 3.854 11 N -0.613 5.613 12 C -0.239 4.239 13 H 0.055 0.945 14 C -0.031 4.031 15 N -0.954 5.954 16 Si 0.935 3.065 17 H -0.273 1.273 18 H -0.265 1.265 19 H -0.315 1.315 20 C 0.135 3.865 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.135 4.135 24 S 2.624 3.376 25 C -0.654 4.654 26 O -0.984 6.984 27 O -0.985 6.985 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.884 -13.905 -17.027 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.821 5.821 3 C -0.034 4.034 4 C 0.271 3.729 5 O -0.443 6.443 6 N -0.360 5.360 7 C 0.070 3.930 8 H 0.088 0.912 9 C -0.174 4.174 10 C 0.021 3.979 11 N -0.337 5.337 12 C -0.369 4.369 13 H 0.072 0.928 14 C -0.226 4.226 15 N -0.600 5.600 16 Si 0.765 3.235 17 H -0.200 1.200 18 H -0.190 1.190 19 H -0.244 1.244 20 C 0.009 3.991 21 C -0.085 4.085 22 C -0.183 4.183 23 C -0.193 4.193 24 S 2.719 3.281 25 C -0.806 4.806 26 O -0.974 6.974 27 O -0.976 6.976 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.156 0.844 48 H 0.159 0.841 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.923 -14.720 -17.117 26.013 hybrid contribution -0.192 1.181 1.532 1.944 sum -13.116 -13.539 -15.584 24.458 Atomic orbital electron populations 1.21612 0.76732 1.03916 1.02899 1.56988 1.16065 1.19800 1.89223 1.21486 1.01327 0.87690 0.92853 1.21864 0.77213 0.80908 0.92896 1.90687 1.49298 1.57095 1.47256 1.46073 1.57161 1.23680 1.09130 1.20565 0.97587 0.92060 0.82750 0.91180 1.22295 0.98707 0.99648 0.96736 1.21011 0.99400 0.82421 0.95110 1.44457 1.25995 1.01766 1.61482 1.18829 0.90620 0.97054 1.30370 0.92753 1.25743 0.99700 0.96964 1.00205 1.69977 1.32103 1.06916 1.51049 0.86084 0.82949 0.77699 0.76794 1.19994 1.19014 1.24385 1.21510 0.89943 0.95818 0.91789 1.21290 0.97271 0.94099 0.95815 1.21711 0.96500 1.00733 0.99343 1.21805 0.95796 1.00382 1.01284 1.04354 0.72812 0.72874 0.78021 1.30378 1.12894 1.12479 1.24883 1.93567 1.65257 1.63300 1.75317 1.93551 1.45214 1.83383 1.75441 0.91037 0.90868 0.90192 0.83296 0.84893 0.74854 0.91286 0.91340 0.92510 0.95558 0.93077 0.95779 0.92913 0.90196 0.94187 0.93427 0.92933 0.92868 0.89647 0.84407 0.84124 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.20 127.77 1.30 2.37 16 2 N -0.98 -13.93 2.61 -543.23 -1.42 -15.35 16 3 C 0.10 1.11 6.12 85.63 0.52 1.64 16 4 C 0.49 8.67 7.86 87.66 0.69 9.36 16 5 O -0.56 -13.64 14.67 -3.04 -0.04 -13.68 16 6 N -0.71 -12.56 4.29 -442.40 -1.90 -14.46 16 7 C 0.18 4.57 1.57 45.02 0.07 4.64 16 8 H 0.07 2.08 7.57 -2.39 -0.02 2.06 16 9 C -0.13 -3.97 5.31 30.67 0.16 -3.80 16 10 C 0.15 5.47 6.51 86.36 0.56 6.03 16 11 N -0.61 -27.40 2.23 -698.25 -1.55 -28.95 16 12 C -0.24 -13.09 10.05 84.03 0.84 -12.25 16 13 H 0.05 3.26 8.04 -2.91 -0.02 3.24 16 14 C -0.03 -1.79 5.21 84.86 0.44 -1.35 16 15 N -0.95 -58.81 13.97 21.65 0.30 -58.51 16 16 Si 0.93 45.64 24.36 68.60 1.67 47.32 16 17 H -0.27 -12.47 6.68 99.48 0.66 -11.80 16 18 H -0.27 -12.56 6.54 99.48 0.65 -11.91 16 19 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 20 C 0.13 5.35 2.93 86.51 0.25 5.60 16 21 C -0.08 -2.36 0.56 -51.96 -0.03 -2.39 16 22 C -0.13 -3.55 7.84 71.98 0.56 -2.99 16 23 C -0.13 -3.02 8.31 71.98 0.60 -2.42 16 24 S 2.62 45.35 6.02 -56.49 -0.34 45.01 16 25 C -0.65 -9.37 10.52 113.37 1.19 -8.18 16 26 O -0.98 -22.16 17.09 -127.65 -2.18 -24.34 16 27 O -0.99 -22.15 16.53 -127.65 -2.11 -24.26 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 30 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 31 H 0.15 0.71 8.11 -2.39 -0.02 0.69 16 32 H 0.13 1.41 6.82 -2.38 -0.02 1.39 16 33 H 0.41 5.06 6.66 -92.71 -0.62 4.44 16 34 H 0.07 2.08 6.34 -2.39 -0.02 2.07 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.18 7.92 -2.38 -0.02 2.16 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.02 0.97 7.09 -2.39 -0.02 0.95 16 40 H 0.05 2.35 4.36 -2.39 -0.01 2.34 16 41 H 0.08 1.53 6.58 -2.38 -0.02 1.51 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.63 5.97 -2.39 -0.01 1.62 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.08 1.34 7.36 -2.38 -0.02 1.32 16 47 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.13 2.12 7.22 -2.39 -0.02 2.10 16 Total: -1.00 -77.29 384.42 -0.15 -77.44 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.24 Total: 13.52 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 7.18 Total: -3.73 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -4.57 Total: -117.27 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -4.34 Total: -62.28 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.32 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -0.34 Total: 45.01 kcal Total: -77.29 -0.15 -77.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570394023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.172 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds