Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 C 1.52989 * 109.47545 * 239.99659 * 2 1 3 5 5 N 1.46507 * 109.46876 * 119.99385 * 2 1 3 6 6 S 1.65596 * 119.99785 * 68.36086 * 5 2 1 7 7 O 1.42105 * 104.27566 * 311.17381 * 6 5 2 8 8 O 1.42100 * 104.27832 * 183.31923 * 6 5 2 9 9 C 1.81396 * 104.45245 * 67.24740 * 6 5 2 10 10 C 1.50693 * 109.47190 * 172.46483 * 9 6 5 11 11 O 1.21281 * 120.00545 * 359.97438 * 10 9 6 12 12 N 1.34783 * 120.00194 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00386 * 180.02562 * 12 10 9 14 14 C 1.53777 * 113.61123 * 254.13785 * 13 12 10 15 15 C 1.54047 * 86.98962 * 270.83470 * 14 13 12 16 16 C 1.52994 * 113.62391 * 220.02445 * 15 14 13 17 17 N 1.46497 * 109.47177 * 272.49138 * 16 15 14 18 18 C 1.36939 * 120.00362 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99821 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00265 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00022 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47574 * 89.99822 * 22 20 18 24 24 H 1.48505 * 109.46990 * 209.99732 * 22 20 18 25 25 H 1.48497 * 109.47188 * 329.99517 * 22 20 18 26 26 C 1.53773 * 113.61635 * 156.53355 * 13 12 10 27 27 H 1.08995 * 109.47436 * 290.29491 * 1 2 3 28 28 H 1.09006 * 109.46449 * 50.29527 * 1 2 3 29 29 H 1.08997 * 109.46902 * 170.29344 * 1 2 3 30 30 H 1.09001 * 109.47292 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47003 * 299.99882 * 3 2 1 32 32 H 1.08999 * 109.47437 * 59.99165 * 3 2 1 33 33 H 1.09001 * 109.47130 * 312.32991 * 4 2 1 34 34 H 1.09002 * 109.47217 * 72.33010 * 4 2 1 35 35 H 1.09002 * 109.47352 * 192.33140 * 4 2 1 36 36 H 0.96999 * 119.99892 * 248.36168 * 5 2 1 37 37 H 1.09000 * 109.47364 * 52.46289 * 9 6 5 38 38 H 1.09002 * 109.46886 * 292.46455 * 9 6 5 39 39 H 0.97007 * 119.99441 * 0.02562 * 12 10 9 40 40 H 1.08998 * 112.84765 * 25.32747 * 13 12 10 41 41 H 1.09005 * 113.61792 * 25.43205 * 14 13 12 42 42 H 1.09006 * 113.61266 * 156.33192 * 14 13 12 43 43 H 1.09006 * 113.68506 * 89.12580 * 15 14 13 44 44 H 1.08998 * 109.47247 * 32.49170 * 16 15 14 45 45 H 1.09002 * 109.47270 * 152.49216 * 16 15 14 46 46 H 0.97007 * 120.00127 * 359.97438 * 17 16 15 47 47 H 0.96995 * 120.00077 * 179.97438 * 21 20 18 48 48 H 1.09005 * 113.61283 * 203.66447 * 26 13 12 49 49 H 1.09009 * 113.61312 * 334.56167 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 16 1.7957 -2.3234 1.3586 7 8 0.4208 -2.5211 1.0586 8 8 2.3145 -2.6214 2.6475 9 6 2.8402 -3.0533 0.0676 10 6 2.8675 -4.5511 0.2307 11 8 2.2440 -5.0748 1.1296 12 7 3.5847 -5.3090 -0.6224 13 6 3.6108 -6.7652 -0.4643 14 6 4.9341 -7.2989 0.1089 15 6 5.4316 -7.3947 -1.3459 16 6 6.2560 -8.6517 -1.6304 17 7 7.6633 -8.3944 -1.3151 18 6 8.5961 -9.3814 -1.4914 19 1 8.2943 -10.3494 -1.8632 20 6 9.9295 -9.1378 -1.1921 21 7 10.2974 -7.9579 -0.7394 22 14 11.2019 -10.4839 -1.4333 23 1 11.7536 -10.4029 -2.8096 24 1 12.2999 -10.3093 -0.4487 25 1 10.5638 -11.8098 -1.2331 26 6 3.9556 -7.5194 -1.7592 27 1 -0.3634 0.3564 0.9638 28 1 -0.3632 0.6566 -0.7907 29 1 -0.3633 -1.0129 -0.1733 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.5088 -1.6658 -1.3656 34 1 1.8672 -0.0966 -2.1254 35 1 3.1078 -0.9153 -1.1461 36 1 2.4720 -0.1912 1.8933 37 1 3.8531 -2.6599 0.1542 38 1 2.4353 -2.8018 -0.9126 39 1 4.0836 -4.8901 -1.3412 40 1 2.7274 -7.1516 0.0441 41 1 5.4759 -6.5684 0.7099 42 1 4.8378 -8.2663 0.6020 43 1 5.9104 -6.4840 -1.7059 44 1 5.8901 -9.4733 -1.0147 45 1 6.1623 -8.9171 -2.6835 46 1 7.9345 -7.5249 -0.9815 47 1 11.2290 -7.7877 -0.5299 48 1 3.5922 -8.5469 -1.7760 49 1 3.7078 -6.9668 -2.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570581191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = -72.353849 kcal Electronic energy + Delta-G solvation = -28930.166714 eV Core-core repulsion = 24827.793292 eV Total energy + Delta-G solvation = -4102.373422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.45263 -38.64495 -38.54746 -37.18311 -36.14679 -34.64890 -33.43026 -31.53616 -31.27299 -30.57080 -27.94225 -27.68132 -26.72018 -25.57677 -23.50138 -21.79913 -21.41645 -21.00236 -19.59618 -19.20088 -18.31475 -17.19517 -17.07151 -16.98224 -16.85461 -15.86454 -15.78559 -15.09665 -14.90721 -14.74865 -14.60553 -14.33436 -14.09244 -13.90977 -13.56117 -13.46520 -13.27520 -12.89305 -12.74351 -12.63958 -12.44500 -12.35571 -12.28324 -12.20554 -11.99837 -11.95135 -11.85530 -11.71298 -11.33394 -11.09535 -11.07066 -10.84795 -10.64035 -10.41262 -10.39275 -10.12991 -10.05671 -9.88072 -9.65282 -9.21258 -8.86787 -6.92263 -5.77722 -3.05990 -0.15264 2.12435 2.34158 2.74323 3.42528 3.47740 3.49574 3.54100 3.81328 4.00740 4.14718 4.20782 4.40041 4.49099 4.55726 4.57753 4.63218 4.75325 4.81156 4.94421 4.99698 5.03784 5.07121 5.17207 5.30542 5.39501 5.49439 5.56142 5.56401 5.62274 5.77309 5.79282 5.88138 5.91445 6.01617 6.04368 6.14860 6.23050 6.36745 6.51999 6.54059 6.74343 6.88907 7.09400 7.68906 7.75873 8.41597 9.52557 10.11297 10.45576 11.45310 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.001953 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.554076 B =14331.961078 C =14803.624727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.170 3.830 3 C -0.150 4.150 4 C -0.199 4.199 5 N -1.114 6.114 6 S 2.646 3.354 7 O -0.938 6.938 8 O -0.939 6.939 9 C -0.693 4.693 10 C 0.544 3.456 11 O -0.535 6.535 12 N -0.694 5.694 13 C 0.109 3.891 14 C -0.139 4.139 15 C -0.114 4.114 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.419 0.581 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.406 0.594 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.098 0.902 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.495 20.810 -2.578 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 C -0.209 4.209 4 C -0.257 4.257 5 N -0.874 5.874 6 S 2.733 3.267 7 O -0.928 6.928 8 O -0.929 6.929 9 C -0.820 4.820 10 C 0.328 3.672 11 O -0.413 6.413 12 N -0.344 5.344 13 C 0.005 3.995 14 C -0.177 4.177 15 C -0.133 4.133 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.175 4.175 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.181 0.819 38 H 0.188 0.812 39 H 0.241 0.759 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.488 19.711 -1.510 29.198 hybrid contribution 2.074 0.156 -0.761 2.215 sum -19.414 19.867 -2.271 27.870 Atomic orbital electron populations 1.22588 0.93368 1.04865 1.02848 1.20188 0.94656 0.93631 0.83329 1.22069 1.01813 0.93781 1.03205 1.22975 1.02240 1.01702 0.98799 1.55996 1.74785 1.26926 1.29705 1.04155 0.75313 0.72471 0.74785 1.93574 1.29228 1.84671 1.85341 1.93614 1.81423 1.82862 1.34974 1.31811 1.20854 1.04614 1.24719 1.19147 0.79441 0.86473 0.82179 1.90864 1.44145 1.74016 1.32298 1.45536 1.49433 1.07260 1.32125 1.22100 1.00113 0.78524 0.98799 1.23477 0.95024 1.02017 0.97207 1.22829 0.94186 1.00422 0.95841 1.20636 0.85526 0.93303 0.97085 1.42347 1.01309 1.14706 1.79241 1.19244 0.88057 0.93375 1.36317 0.91214 1.24748 0.97228 0.97022 1.02158 1.69659 1.16394 1.21254 1.51037 0.86177 0.81482 0.81141 0.77321 1.21761 1.21773 1.20762 1.23311 0.96913 1.01051 0.96186 0.91672 0.91554 0.89434 0.91629 0.90863 0.91603 0.91436 0.89346 0.90602 0.74625 0.81926 0.81230 0.75923 0.87834 0.91123 0.88774 0.89413 0.96120 0.96369 0.78361 0.93550 0.88402 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 8.06 37.16 0.30 -0.81 16 2 C 0.17 0.85 1.14 -131.82 -0.15 0.70 16 3 C -0.15 -0.48 8.55 37.16 0.32 -0.16 16 4 C -0.20 -0.71 6.74 37.15 0.25 -0.46 16 5 N -1.11 -7.04 5.47 0.54 0.00 -7.04 16 6 S 2.65 27.56 4.39 -107.50 -0.47 27.09 16 7 O -0.94 -12.12 15.14 -57.54 -0.87 -12.99 16 8 O -0.94 -13.85 17.79 -60.98 -1.08 -14.93 16 9 C -0.69 -5.29 4.94 36.00 0.18 -5.11 16 10 C 0.54 6.60 7.85 -10.99 -0.09 6.52 16 11 O -0.54 -8.83 15.26 1.92 0.03 -8.80 16 12 N -0.69 -7.38 5.26 -53.03 -0.28 -7.66 16 13 C 0.11 1.35 4.30 -67.13 -0.29 1.06 16 14 C -0.14 -2.03 7.45 -25.78 -0.19 -2.22 16 15 C -0.11 -1.69 3.64 -89.67 -0.33 -2.02 16 16 C 0.16 3.16 6.10 -4.05 -0.02 3.13 16 17 N -0.73 -18.41 5.60 -59.91 -0.34 -18.75 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.14 -1.55 7.38 -25.92 -0.19 -1.74 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.09 0.71 5.94 -51.93 -0.31 0.40 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.25 5.66 -51.93 -0.29 -0.04 16 34 H 0.09 0.19 8.09 -51.93 -0.42 -0.23 16 35 H 0.08 0.17 7.11 -51.93 -0.37 -0.20 16 36 H 0.42 2.00 8.58 -34.47 -0.30 1.70 16 37 H 0.16 0.74 8.09 -51.92 -0.42 0.32 16 38 H 0.17 0.75 4.65 -51.92 -0.24 0.50 16 39 H 0.41 3.16 8.70 -40.82 -0.36 2.81 16 40 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.41 7.85 -51.93 -0.41 0.01 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 48 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 49 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -38.75 399.70 -9.74 -48.49 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.99 Total: 7.22 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.46 Total: -8.53 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.11 Total: -61.02 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.93 Total: -36.72 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 27.56 SS G_CDS: -0.47 Total: 27.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.75 -9.74 -48.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570581191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.865 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds