Wall clock time and date at job start Wed Apr 1 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 C 1.52989 * 109.47545 * 239.99659 * 2 1 3 5 5 N 1.46507 * 109.46876 * 119.99385 * 2 1 3 6 6 S 1.65596 * 119.99785 * 68.36086 * 5 2 1 7 7 O 1.42105 * 104.27566 * 311.17381 * 6 5 2 8 8 O 1.42100 * 104.27832 * 183.31923 * 6 5 2 9 9 C 1.81396 * 104.45245 * 67.24740 * 6 5 2 10 10 C 1.50693 * 109.47190 * 172.46483 * 9 6 5 11 11 O 1.21281 * 120.00545 * 359.97438 * 10 9 6 12 12 N 1.34783 * 120.00194 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00386 * 180.02562 * 12 10 9 14 14 C 1.53777 * 113.61123 * 254.13785 * 13 12 10 15 15 C 1.54047 * 86.98962 * 270.83470 * 14 13 12 16 16 C 1.52994 * 113.62391 * 220.02445 * 15 14 13 17 17 N 1.46497 * 109.47177 * 272.49138 * 16 15 14 18 18 C 1.36939 * 120.00362 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99821 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00265 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99959 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00022 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47574 * 89.99822 * 22 20 18 24 24 H 1.48505 * 109.46990 * 209.99732 * 22 20 18 25 25 H 1.48497 * 109.47188 * 329.99517 * 22 20 18 26 26 C 1.53773 * 113.61635 * 156.53355 * 13 12 10 27 27 H 1.08995 * 109.47436 * 290.29491 * 1 2 3 28 28 H 1.09006 * 109.46449 * 50.29527 * 1 2 3 29 29 H 1.08997 * 109.46902 * 170.29344 * 1 2 3 30 30 H 1.09001 * 109.47292 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47003 * 299.99882 * 3 2 1 32 32 H 1.08999 * 109.47437 * 59.99165 * 3 2 1 33 33 H 1.09001 * 109.47130 * 312.32991 * 4 2 1 34 34 H 1.09002 * 109.47217 * 72.33010 * 4 2 1 35 35 H 1.09002 * 109.47352 * 192.33140 * 4 2 1 36 36 H 0.96999 * 119.99892 * 248.36168 * 5 2 1 37 37 H 1.09000 * 109.47364 * 52.46289 * 9 6 5 38 38 H 1.09002 * 109.46886 * 292.46455 * 9 6 5 39 39 H 0.97007 * 119.99441 * 0.02562 * 12 10 9 40 40 H 1.08998 * 112.84765 * 25.32747 * 13 12 10 41 41 H 1.09005 * 113.61792 * 25.43205 * 14 13 12 42 42 H 1.09006 * 113.61266 * 156.33192 * 14 13 12 43 43 H 1.09006 * 113.68506 * 89.12580 * 15 14 13 44 44 H 1.08998 * 109.47247 * 32.49170 * 16 15 14 45 45 H 1.09002 * 109.47270 * 152.49216 * 16 15 14 46 46 H 0.97007 * 120.00127 * 359.97438 * 17 16 15 47 47 H 0.96995 * 120.00077 * 179.97438 * 21 20 18 48 48 H 1.09005 * 113.61283 * 203.66447 * 26 13 12 49 49 H 1.09009 * 113.61312 * 334.56167 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 16 1.7957 -2.3234 1.3586 7 8 0.4208 -2.5211 1.0586 8 8 2.3145 -2.6214 2.6475 9 6 2.8402 -3.0533 0.0676 10 6 2.8675 -4.5511 0.2307 11 8 2.2440 -5.0748 1.1296 12 7 3.5847 -5.3090 -0.6224 13 6 3.6108 -6.7652 -0.4643 14 6 4.9341 -7.2989 0.1089 15 6 5.4316 -7.3947 -1.3459 16 6 6.2560 -8.6517 -1.6304 17 7 7.6633 -8.3944 -1.3151 18 6 8.5961 -9.3814 -1.4914 19 1 8.2943 -10.3494 -1.8632 20 6 9.9295 -9.1378 -1.1921 21 7 10.2974 -7.9579 -0.7394 22 14 11.2019 -10.4839 -1.4333 23 1 11.7536 -10.4029 -2.8096 24 1 12.2999 -10.3093 -0.4487 25 1 10.5638 -11.8098 -1.2331 26 6 3.9556 -7.5194 -1.7592 27 1 -0.3634 0.3564 0.9638 28 1 -0.3632 0.6566 -0.7907 29 1 -0.3633 -1.0129 -0.1733 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.5088 -1.6658 -1.3656 34 1 1.8672 -0.0966 -2.1254 35 1 3.1078 -0.9153 -1.1461 36 1 2.4720 -0.1912 1.8933 37 1 3.8531 -2.6599 0.1542 38 1 2.4353 -2.8018 -0.9126 39 1 4.0836 -4.8901 -1.3412 40 1 2.7274 -7.1516 0.0441 41 1 5.4759 -6.5684 0.7099 42 1 4.8378 -8.2663 0.6020 43 1 5.9104 -6.4840 -1.7059 44 1 5.8901 -9.4733 -1.0147 45 1 6.1623 -8.9171 -2.6835 46 1 7.9345 -7.5249 -0.9815 47 1 11.2290 -7.7877 -0.5299 48 1 3.5922 -8.5469 -1.7760 49 1 3.7078 -6.9668 -2.6656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570581191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:22 Heat of formation + Delta-G solvation = -104.351916 kcal Electronic energy + Delta-G solvation = -28931.554254 eV Core-core repulsion = 24827.793292 eV Total energy + Delta-G solvation = -4103.760962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47193 -39.67152 -39.11811 -38.03093 -37.05515 -36.38190 -34.69081 -32.95502 -31.99242 -31.59653 -28.57686 -28.15352 -27.93663 -26.65796 -25.26650 -23.15003 -22.47817 -21.52675 -20.46901 -20.20734 -19.14600 -19.01545 -17.97573 -17.78797 -17.62409 -16.88318 -16.60948 -16.50043 -15.92149 -15.80945 -15.67156 -15.17085 -15.16394 -14.97612 -14.70349 -14.55193 -14.14242 -13.92459 -13.78071 -13.41856 -13.29802 -13.23868 -13.13713 -13.04226 -12.91991 -12.87052 -12.71895 -12.54778 -12.37250 -12.36469 -12.19366 -11.96032 -11.94384 -11.80202 -11.58313 -11.40348 -11.35993 -11.17828 -10.86552 -10.55764 -10.22189 -8.97884 -7.95687 -5.23604 -0.92608 1.20895 1.46831 1.48410 1.56858 1.62468 1.95144 2.55773 2.78301 3.11606 3.31666 3.37341 3.54758 3.56801 3.71793 3.80076 3.90841 3.92671 4.01421 4.06113 4.11519 4.32513 4.38801 4.53883 4.69120 4.73598 4.77487 4.83017 4.84802 4.89502 4.90356 4.97838 5.00657 5.05634 5.12537 5.17138 5.23456 5.30125 5.33833 5.45147 5.48343 5.54627 5.60841 6.10640 6.21510 6.27616 6.91414 7.33537 8.11672 8.33711 9.27934 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.001953 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.554076 B =14331.961078 C =14803.624727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.164 3.836 3 C -0.148 4.148 4 C -0.210 4.210 5 N -1.101 6.101 6 S 2.644 3.356 7 O -0.974 6.974 8 O -0.994 6.994 9 C -0.676 4.676 10 C 0.534 3.466 11 O -0.586 6.586 12 N -0.681 5.681 13 C 0.116 3.884 14 C -0.147 4.147 15 C -0.110 4.110 16 C 0.158 3.842 17 N -0.745 5.745 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.113 4.113 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.426 0.574 37 H 0.201 0.799 38 H 0.209 0.791 39 H 0.423 0.577 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.018 0.982 45 H 0.024 0.976 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.107 0.893 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 21.746 -5.106 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.268 4.268 5 N -0.864 5.864 6 S 2.735 3.265 7 O -0.964 6.964 8 O -0.984 6.984 9 C -0.805 4.805 10 C 0.319 3.681 11 O -0.468 6.468 12 N -0.332 5.332 13 C 0.010 3.990 14 C -0.185 4.185 15 C -0.129 4.129 16 C 0.032 3.968 17 N -0.388 5.388 18 C -0.377 4.377 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.151 4.151 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.263 0.737 37 H 0.219 0.781 38 H 0.226 0.774 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.036 0.964 45 H 0.042 0.958 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.125 0.875 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.462 20.657 -4.055 30.063 hybrid contribution 1.998 -0.118 -0.016 2.002 sum -19.464 20.540 -4.071 28.588 Atomic orbital electron populations 1.22639 0.94751 1.03924 1.02930 1.20427 0.93752 0.94895 0.83258 1.22079 1.02451 0.92279 1.03838 1.23099 1.03336 1.01782 0.98541 1.55669 1.74749 1.25170 1.30781 1.03733 0.74917 0.73384 0.74460 1.93537 1.31576 1.85528 1.85715 1.93544 1.82054 1.84156 1.38608 1.31734 1.22528 1.01093 1.25142 1.19819 0.78631 0.88236 0.81389 1.90854 1.46212 1.75334 1.34365 1.45441 1.49015 1.06562 1.32206 1.21932 0.98307 0.79662 0.99049 1.23500 0.96611 1.01434 0.97004 1.22761 0.95604 0.98339 0.96209 1.20837 0.83322 0.95592 0.97018 1.42580 1.03276 1.13741 1.79166 1.19656 0.88895 0.94082 1.35039 0.90752 1.25572 0.99326 0.99273 1.02860 1.69809 1.16409 1.23159 1.52701 0.85141 0.78699 0.78897 0.77035 1.21189 1.22299 1.19590 1.23219 0.93292 1.01919 0.96679 0.92936 0.89479 0.91574 0.90606 0.89341 0.91923 0.91772 0.87365 0.88661 0.73690 0.78149 0.77440 0.73892 0.88562 0.92848 0.89678 0.89040 0.96386 0.95808 0.79504 0.94041 0.87471 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.06 71.98 0.58 -1.56 16 2 C 0.16 1.29 1.14 3.60 0.00 1.30 16 3 C -0.15 -0.55 8.55 71.98 0.62 0.07 16 4 C -0.21 -0.76 6.74 71.98 0.49 -0.27 16 5 N -1.10 -12.76 5.47 -152.21 -0.83 -13.59 16 6 S 2.64 55.04 4.39 -56.49 -0.25 54.79 16 7 O -0.97 -26.03 15.14 -127.65 -1.93 -27.96 16 8 O -0.99 -30.64 17.79 -124.36 -2.21 -32.85 16 9 C -0.68 -8.71 4.94 71.23 0.35 -8.36 16 10 C 0.53 12.28 7.85 87.65 0.69 12.96 16 11 O -0.59 -19.67 15.26 0.45 0.01 -19.66 16 12 N -0.68 -12.96 5.26 -440.06 -2.32 -15.28 16 13 C 0.12 2.68 4.30 45.51 0.20 2.88 16 14 C -0.15 -4.25 7.45 31.21 0.23 -4.02 16 15 C -0.11 -3.10 3.64 -10.18 -0.04 -3.14 16 16 C 0.16 6.01 6.10 86.38 0.53 6.53 16 17 N -0.75 -37.39 5.60 -343.47 -1.92 -39.31 16 18 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 22 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.11 -2.23 7.38 31.12 0.23 -2.00 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.60 8.12 -2.38 -0.02 0.58 16 29 H 0.07 1.08 5.94 -2.39 -0.01 1.07 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.28 5.66 -2.39 -0.01 0.27 16 34 H 0.11 0.01 8.09 -2.39 -0.02 -0.01 16 35 H 0.09 -0.01 7.11 -2.39 -0.02 -0.03 16 36 H 0.43 3.73 8.58 -96.75 -0.83 2.90 16 37 H 0.20 1.05 8.09 -2.39 -0.02 1.04 16 38 H 0.21 1.05 4.65 -2.39 -0.01 1.04 16 39 H 0.42 5.07 8.70 -92.70 -0.81 4.27 16 40 H 0.10 2.44 7.50 -2.39 -0.02 2.42 16 41 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.08 2.59 7.90 -2.38 -0.02 2.57 16 43 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 44 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.37 19.88 7.67 -92.70 -0.71 19.16 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.11 1.99 8.10 -2.38 -0.02 1.97 16 49 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -87.57 399.70 -3.33 -90.91 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -1.36 Total: 26.27 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.18 Total: -12.49 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -4.79 Total: -127.16 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -4.14 Total: -80.47 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.25 Total: 54.79 kcal Total: -87.57 -3.33 -90.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570581191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.443 kcal (2) G-P(sol) polarization free energy of solvation -87.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds