Wall clock time and date at job start Wed Apr 1 2020 04:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00081 * 2 1 4 4 C 1.52993 * 109.47195 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47346 * 64.99962 * 4 3 2 6 6 C 1.42895 * 114.00272 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47515 * 179.97438 * 6 5 4 8 8 H 1.09001 * 110.63804 * 54.30054 * 7 6 5 9 9 C 1.55150 * 110.71967 * 291.16004 * 7 6 5 10 10 C 1.54911 * 101.58301 * 206.13050 * 9 7 6 11 11 N 1.47430 * 104.83016 * 37.00694 * 10 9 7 12 12 S 1.65595 * 125.64671 * 155.90130 * 11 10 9 13 13 O 1.42100 * 104.27914 * 206.05020 * 12 11 10 14 14 O 1.42097 * 104.28031 * 333.91050 * 12 11 10 15 15 C 1.81405 * 104.44715 * 89.97869 * 12 11 10 16 16 C 1.52998 * 109.47150 * 174.01171 * 15 12 11 17 17 C 1.50705 * 115.54603 * 65.28326 * 16 15 12 18 18 H 1.08003 * 119.99493 * 268.54208 * 17 16 15 19 19 C 1.37875 * 120.00496 * 88.54676 * 17 16 15 20 20 N 1.31507 * 120.00221 * 174.70228 * 19 17 16 21 21 Si 1.86800 * 119.99581 * 354.69381 * 19 17 16 22 22 H 1.48498 * 109.47179 * 92.55812 * 21 19 17 23 23 H 1.48504 * 109.47016 * 212.55798 * 21 19 17 24 24 H 1.48497 * 109.47544 * 332.55702 * 21 19 17 25 25 C 1.52991 * 117.50562 * 279.60914 * 16 15 12 26 26 C 1.52997 * 117.50177 * 210.94254 * 16 15 12 27 27 C 1.47314 * 108.73322 * 335.72159 * 11 10 9 28 28 H 1.09002 * 109.46726 * 59.99787 * 1 2 3 29 29 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47144 * 300.00214 * 1 2 3 31 31 H 1.09004 * 109.46851 * 59.99415 * 3 2 1 32 32 H 1.09005 * 109.47055 * 300.00166 * 3 2 1 33 33 H 1.08997 * 109.47157 * 185.00473 * 4 3 2 34 34 H 1.09005 * 109.47306 * 304.99835 * 4 3 2 35 35 H 1.08998 * 109.47260 * 299.99868 * 6 5 4 36 36 H 1.09002 * 109.47299 * 59.99837 * 6 5 4 37 37 H 1.09004 * 111.00925 * 324.20659 * 9 7 6 38 38 H 1.08999 * 111.00697 * 88.05953 * 9 7 6 39 39 H 1.08998 * 110.36830 * 155.84369 * 10 9 7 40 40 H 1.08996 * 110.37021 * 278.06262 * 10 9 7 41 41 H 1.08995 * 109.47060 * 294.01794 * 15 12 11 42 42 H 1.09006 * 109.46963 * 54.01646 * 15 12 11 43 43 H 0.96998 * 120.00459 * 179.97438 * 20 19 17 44 44 H 1.09008 * 117.49884 * 359.97438 * 25 16 15 45 45 H 1.09001 * 117.50520 * 145.01943 * 25 16 15 46 46 H 1.08996 * 117.50713 * 214.98227 * 26 16 15 47 47 H 1.09007 * 117.49706 * 0.02562 * 26 16 15 48 48 H 1.09009 * 110.05656 * 241.86478 * 27 11 10 49 49 H 1.08995 * 109.85088 * 120.61220 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5793 -1.2200 6 6 5.3822 0.4187 -1.3215 7 6 5.7267 -0.2360 -2.6607 8 1 5.2946 0.3287 -3.4868 9 6 5.2437 -1.7101 -2.6914 10 6 6.2236 -2.3372 -3.7143 11 7 7.5138 -1.6715 -3.4579 12 16 9.0070 -2.2880 -3.8221 13 8 9.8811 -1.6607 -2.8938 14 8 8.8166 -3.6962 -3.8126 15 6 9.3401 -1.7021 -5.5063 16 6 10.7665 -2.0845 -5.9065 17 6 11.0343 -3.5629 -6.0239 18 1 11.3987 -4.1150 -5.1701 19 6 10.8144 -4.2105 -7.2210 20 7 11.1457 -5.4762 -7.3545 21 14 10.0456 -3.2902 -8.6532 22 1 11.1178 -2.7184 -9.5069 23 1 9.2194 -4.2265 -9.4570 24 1 9.1885 -2.1941 -8.1345 25 6 11.9049 -1.1986 -5.3968 26 6 11.5024 -1.1544 -6.8730 27 6 7.2553 -0.3652 -2.8281 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.9784 2.1765 0.0903 34 1 3.8508 0.5686 0.8427 35 1 5.8638 1.3945 -1.2591 36 1 5.7354 -0.2135 -0.5068 37 1 5.3500 -2.1766 -1.7120 38 1 4.2147 -1.7769 -3.0446 39 1 6.3108 -3.4108 -3.5472 40 1 5.8880 -2.1385 -4.7321 41 1 8.6333 -2.1614 -6.1972 42 1 9.2310 -0.6181 -5.5421 43 1 10.9907 -5.9319 -8.1965 44 1 11.6377 -0.3429 -4.7765 45 1 12.8478 -1.6849 -5.1466 46 1 12.1807 -1.6116 -7.5934 47 1 10.9705 -0.2698 -7.2234 48 1 7.6276 0.4372 -3.4652 49 1 7.7400 -0.3221 -1.8528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654372374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:51 Heat of formation + Delta-G solvation = -159.165816 kcal Electronic energy + Delta-G solvation = -29268.791538 eV Core-core repulsion = 25130.360915 eV Total energy + Delta-G solvation = -4138.430622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.00907 -39.03911 -38.85875 -38.03476 -37.85225 -36.84414 -34.31080 -33.01942 -30.93092 -30.29037 -30.07975 -27.63474 -27.16583 -26.03041 -23.54774 -23.37585 -23.21572 -21.39177 -21.17662 -19.90361 -18.72880 -18.48606 -18.10752 -17.61341 -17.28197 -17.10367 -16.71026 -16.49245 -16.29467 -16.10047 -15.75374 -15.57950 -14.90077 -14.83398 -14.76007 -14.55356 -14.28296 -13.98698 -13.86814 -13.72854 -13.23568 -13.18881 -13.02588 -12.98991 -12.82796 -12.69621 -12.51752 -12.41002 -12.30198 -12.22405 -12.06091 -11.93114 -11.78298 -11.70197 -11.64341 -11.55183 -10.98364 -10.74349 -10.60591 -10.48515 -10.37108 -9.84032 -8.33626 -6.46982 -0.66028 1.34328 1.36222 1.49469 1.88089 2.34489 2.64764 2.90386 2.91387 2.98559 3.14655 3.23331 3.54840 3.73541 3.80324 3.93293 4.11833 4.17112 4.26908 4.31160 4.35210 4.36372 4.40941 4.44392 4.50113 4.53213 4.56975 4.59284 4.60694 4.62785 4.65835 4.75406 4.83673 4.84503 4.89475 4.94377 5.00905 5.05222 5.07316 5.16114 5.20069 5.34605 5.44160 5.52133 5.60511 6.17821 6.21758 6.35428 6.64340 7.25574 8.82816 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.002360 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.877394 B =11863.625405 C =12262.450153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.059 3.941 4 C 0.057 3.943 5 O -0.397 6.397 6 C 0.071 3.929 7 C -0.086 4.086 8 H 0.108 0.892 9 C -0.110 4.110 10 C 0.102 3.898 11 N -1.020 6.020 12 S 2.632 3.368 13 O -0.986 6.986 14 O -0.993 6.993 15 C -0.569 4.569 16 C -0.036 4.036 17 C -0.514 4.514 18 H 0.027 0.973 19 C 0.023 3.977 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.261 1.261 23 H -0.295 1.295 24 H -0.215 1.215 25 C -0.172 4.172 26 C -0.166 4.166 27 C 0.117 3.883 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.269 0.731 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.119 0.881 48 H 0.093 0.907 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.143 21.141 11.025 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.316 6.316 6 C -0.006 4.006 7 C -0.106 4.106 8 H 0.127 0.873 9 C -0.149 4.149 10 C -0.023 4.023 11 N -0.859 5.859 12 S 2.731 3.269 13 O -0.976 6.976 14 O -0.983 6.983 15 C -0.701 4.701 16 C -0.039 4.039 17 C -0.551 4.551 18 H 0.045 0.955 19 C -0.176 4.176 20 N -0.580 5.580 21 Si 0.758 3.242 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.138 1.138 25 C -0.210 4.210 26 C -0.205 4.205 27 C -0.008 4.008 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.175 0.825 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.137 0.863 48 H 0.111 0.889 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.553 20.173 11.376 30.965 hybrid contribution 0.025 -0.289 -0.931 0.975 sum -20.528 19.885 10.445 30.429 Atomic orbital electron populations 1.22883 0.79778 1.03493 1.00826 1.87931 1.21214 1.28849 1.95598 1.22726 0.92116 0.84913 1.01975 1.22707 0.93758 0.98528 0.86961 1.87892 1.22329 1.82559 1.38860 1.22491 0.81491 1.00281 0.96331 1.22133 0.93202 0.96649 0.98630 0.87345 1.22726 0.99043 0.94441 0.98704 1.22293 0.81999 0.97263 1.00757 1.58720 1.21256 1.30007 1.75964 1.04127 0.71872 0.73278 0.77589 1.93452 1.65177 1.78094 1.60893 1.93508 1.84790 1.32034 1.87953 1.30186 1.05492 1.12440 1.22007 1.18797 0.87749 0.91835 1.05476 1.20452 1.45656 0.91329 0.97653 0.95522 1.25996 0.94380 0.95368 1.01850 1.70067 1.48018 1.12687 1.27224 0.85937 0.80132 0.79755 0.78399 1.18577 1.22149 1.13754 1.23107 0.99161 1.01732 0.96959 1.23095 1.03600 1.01127 0.92672 1.21920 0.96437 0.83784 0.98629 0.93407 0.89337 0.92751 0.89674 0.92170 0.89398 0.92875 0.90849 0.93305 0.91508 0.88342 0.91728 0.89547 0.85184 0.82522 0.92231 0.86805 0.90213 0.90191 0.86256 0.88878 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.38 10.67 -144.34 -1.54 -8.92 16 3 C 0.06 0.71 6.32 71.98 0.45 1.16 16 4 C 0.06 0.72 6.32 71.98 0.45 1.18 16 5 O -0.40 -7.03 10.20 -144.34 -1.47 -8.50 16 6 C 0.07 1.09 5.22 71.98 0.38 1.47 16 7 C -0.09 -1.49 3.21 -9.61 -0.03 -1.52 16 8 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.11 -2.24 6.44 31.98 0.21 -2.04 16 10 C 0.10 2.60 7.07 86.85 0.61 3.21 16 11 N -1.02 -29.69 3.63 -505.73 -1.83 -31.53 16 12 S 2.63 105.59 5.39 -56.49 -0.30 105.28 16 13 O -0.99 -42.24 17.61 -127.65 -2.25 -44.49 16 14 O -0.99 -50.57 16.94 -127.65 -2.16 -52.73 16 15 C -0.57 -20.87 5.65 71.98 0.41 -20.46 16 16 C -0.04 -1.62 0.79 -52.93 -0.04 -1.66 16 17 C -0.51 -30.03 8.76 25.60 0.22 -29.80 16 18 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 19 C 0.02 1.35 5.47 84.66 0.46 1.81 16 20 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 21 Si 0.94 42.61 24.96 68.60 1.71 44.32 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.22 -8.30 5.68 99.48 0.57 -7.74 16 25 C -0.17 -6.78 9.96 30.62 0.30 -6.48 16 26 C -0.17 -6.29 7.67 30.62 0.23 -6.05 16 27 C 0.12 2.48 6.52 86.67 0.56 3.05 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.07 1.47 7.98 -2.38 -0.02 1.45 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.92 7.67 -2.39 -0.02 1.90 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.13 4.69 6.53 -2.39 -0.02 4.67 16 42 H 0.16 4.07 8.09 -2.39 -0.02 4.05 16 43 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 44 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 45 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.08 3.24 7.34 -2.39 -0.02 3.22 16 47 H 0.12 3.50 8.14 -2.38 -0.02 3.48 16 48 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 49 H 0.07 1.51 7.82 -2.39 -0.02 1.49 16 Total: -1.00 -84.39 405.65 -1.30 -85.69 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.77 Total: 25.60 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 5.48 Total: -54.59 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -1.54 Total: -91.66 kcal Atomic # 8 Polarization: -107.22 SS G_CDS: -7.42 Total: -114.65 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.71 Total: 44.32 kcal Atomic # 16 Polarization: 105.59 SS G_CDS: -0.30 Total: 105.28 kcal Total: -84.39 -1.30 -85.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654372374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.477 kcal (2) G-P(sol) polarization free energy of solvation -84.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds