Wall clock time and date at job start Wed Apr 1 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47536 * 54.99731 * 4 3 2 6 6 C 1.50703 * 109.47251 * 175.00162 * 4 3 2 7 7 O 1.21285 * 119.99836 * 34.99594 * 6 4 3 8 8 N 1.34776 * 119.99901 * 215.00189 * 6 4 3 9 9 C 1.46498 * 120.00138 * 359.97438 * 8 6 4 10 10 C 1.46501 * 119.99640 * 180.02562 * 8 6 4 11 11 C 1.53040 * 109.45746 * 240.02203 * 10 8 6 12 12 C 1.53193 * 109.31459 * 178.60199 * 11 10 8 13 13 N 1.46923 * 108.76566 * 54.65283 * 12 11 10 14 14 C 1.36941 * 120.62805 * 126.40701 * 13 12 11 15 15 H 1.07997 * 120.00062 * 332.60660 * 14 13 12 16 16 C 1.38810 * 120.00010 * 152.61230 * 14 13 12 17 17 N 1.31617 * 119.99952 * 159.34154 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 339.34624 * 16 14 13 19 19 H 1.48493 * 109.47562 * 92.93981 * 18 16 14 20 20 H 1.48501 * 109.47226 * 212.94422 * 18 16 14 21 21 H 1.48511 * 109.46974 * 332.94025 * 18 16 14 22 22 C 1.46927 * 118.74035 * 306.39184 * 13 12 11 23 23 C 1.53038 * 109.46049 * 119.97030 * 10 8 6 24 24 S 1.81397 * 109.47184 * 295.00026 * 4 3 2 25 25 N 1.65599 * 104.45064 * 300.00158 * 24 4 3 26 26 O 1.42095 * 110.54714 * 188.37506 * 24 4 3 27 27 O 1.42103 * 110.54431 * 51.62137 * 24 4 3 28 28 H 1.09005 * 109.47030 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47135 * 300.00416 * 1 2 3 31 31 H 1.09006 * 109.47438 * 240.00265 * 2 1 3 32 32 H 1.08997 * 109.47070 * 119.99851 * 2 1 3 33 33 H 1.08996 * 109.46693 * 59.99737 * 3 2 1 34 34 H 1.08997 * 109.47005 * 299.99890 * 3 2 1 35 35 H 1.09004 * 109.46633 * 90.00472 * 9 8 6 36 36 H 1.09000 * 109.47153 * 210.00211 * 9 8 6 37 37 H 1.09001 * 109.47077 * 330.00603 * 9 8 6 38 38 H 1.08999 * 109.46106 * 359.97438 * 10 8 6 39 39 H 1.08999 * 109.50172 * 298.56850 * 11 10 8 40 40 H 1.09005 * 109.49474 * 58.66520 * 11 10 8 41 41 H 1.09007 * 109.59286 * 294.87142 * 12 11 10 42 42 H 1.08998 * 109.70535 * 174.51314 * 12 11 10 43 43 H 0.97002 * 119.99389 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.58303 * 293.81487 * 22 13 12 45 45 H 1.09000 * 109.70086 * 173.46354 * 22 13 12 46 46 H 1.09000 * 109.49877 * 301.33054 * 23 10 8 47 47 H 1.08997 * 109.49660 * 61.40014 * 23 10 8 48 48 H 0.97008 * 120.00006 * 359.97438 * 25 24 4 49 49 H 0.97002 * 120.00723 * 179.72201 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8408 6 6 4.0724 2.8580 -0.1231 7 8 3.4631 3.7658 0.4018 8 7 5.1987 3.1149 -0.8173 9 6 5.9349 2.0183 -1.4509 10 6 5.6874 4.4908 -0.9371 11 6 5.7388 4.8867 -2.4145 12 6 6.2168 6.3372 -2.5341 13 7 7.4985 6.4722 -1.8285 14 6 8.5929 6.9955 -2.4639 15 1 8.6886 6.9068 -3.5359 16 6 9.5793 7.6399 -1.7299 17 7 10.7874 7.7809 -2.2327 18 14 9.1920 8.3068 -0.0286 19 1 9.5347 7.2854 0.9934 20 1 9.9883 9.5365 0.2142 21 1 7.7449 8.6288 0.0593 22 6 7.5835 6.0352 -0.4283 23 6 7.0899 4.5882 -0.3324 24 16 4.1740 0.7200 1.5510 25 7 3.5553 1.7012 2.7328 26 8 5.5813 0.8824 1.6619 27 8 3.5612 -0.5405 1.7858 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.5622 1.8682 -2.4642 36 1 6.9958 2.2659 -1.4870 37 1 5.7945 1.1047 -0.8731 38 1 5.0145 5.1629 -0.4046 39 1 6.4305 4.2308 -2.9431 40 1 4.7440 4.7945 -2.8506 41 1 5.4803 7.0031 -2.0843 42 1 6.3491 6.5952 -3.5848 43 1 11.4767 8.2309 -1.7196 44 1 6.9585 6.6765 0.1931 45 1 8.6174 6.0920 -0.0878 46 1 7.0570 4.2837 0.7137 47 1 7.7685 3.9347 -0.8804 48 1 3.0046 2.4626 2.4920 49 1 3.7404 1.5125 3.6661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660783894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:43 Heat of formation + Delta-G solvation = -81.578214 kcal Electronic energy + Delta-G solvation = -30808.508833 eV Core-core repulsion = 26705.735413 eV Total energy + Delta-G solvation = -4102.773420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.55934 -38.04923 -37.64472 -36.37750 -35.81584 -35.51957 -33.39972 -32.69564 -31.36673 -30.48067 -30.13419 -27.20108 -25.94921 -24.54289 -22.92672 -22.06765 -21.82936 -20.32898 -19.65012 -19.14746 -18.47830 -17.86457 -17.11116 -16.94512 -16.50919 -16.14451 -15.97842 -15.29193 -15.10392 -14.57220 -14.27357 -14.19278 -14.00614 -13.81360 -13.55424 -13.18626 -13.07371 -13.04563 -12.85667 -12.57464 -12.51830 -12.48457 -12.41058 -12.33072 -11.98970 -11.85846 -11.77774 -11.41217 -11.34815 -10.98955 -10.89928 -10.69546 -10.62262 -10.58965 -10.24522 -10.21141 -10.04791 -9.78470 -9.50923 -8.72854 -8.63483 -7.03517 -5.97794 -3.34241 -0.31150 2.19575 2.37532 2.69253 3.13657 3.31675 3.48165 3.50926 3.56945 3.86223 4.35395 4.39333 4.50981 4.64332 4.71533 4.86732 4.91316 5.05296 5.10770 5.15697 5.21673 5.29968 5.39659 5.41114 5.44310 5.54496 5.59802 5.68746 5.75534 5.76297 5.82937 5.90220 5.99760 6.03227 6.12210 6.20422 6.35266 6.51658 6.54245 6.58887 6.61952 6.78348 6.82309 7.16516 7.75979 7.92173 8.29504 8.89968 9.68712 10.05559 11.17978 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.002973 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.072374 B = 9416.522940 C = 9898.168846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.619 4.619 5 H 0.162 0.838 6 C 0.531 3.469 7 O -0.526 6.526 8 N -0.590 5.590 9 C 0.066 3.934 10 C 0.143 3.857 11 C -0.140 4.140 12 C 0.152 3.848 13 N -0.606 5.606 14 C -0.262 4.262 15 H 0.086 0.914 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.881 3.119 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.143 4.143 24 S 2.626 3.374 25 N -1.244 6.244 26 O -0.946 6.946 27 O -0.948 6.948 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.421 0.579 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -16.932 5.268 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.124 4.124 4 C -0.729 4.729 5 H 0.180 0.820 6 C 0.315 3.685 7 O -0.403 6.403 8 N -0.321 5.321 9 C -0.077 4.077 10 C 0.042 3.958 11 C -0.180 4.180 12 C 0.025 3.975 13 N -0.329 5.329 14 C -0.390 4.390 15 H 0.104 0.896 16 C -0.175 4.175 17 N -0.550 5.550 18 Si 0.711 3.289 19 H -0.215 1.215 20 H -0.231 1.231 21 H -0.195 1.195 22 C 0.002 3.998 23 C -0.183 4.183 24 S 2.714 3.286 25 N -0.921 5.921 26 O -0.935 6.935 27 O -0.937 6.937 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.250 0.750 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.513 -17.248 5.479 25.889 hybrid contribution -0.443 0.957 0.667 1.248 sum -18.955 -16.290 6.146 25.738 Atomic orbital electron populations 1.21689 0.94816 1.02054 1.01962 1.22258 0.97531 0.95346 1.05491 1.21297 0.86400 0.99082 1.05659 1.30712 1.09676 1.07238 1.25287 0.82048 1.19128 0.81208 0.87966 0.80159 1.90723 1.56686 1.45338 1.47558 1.48060 1.23943 1.09487 1.50560 1.21950 0.99296 0.88953 0.97489 1.21302 0.96450 0.80260 0.97823 1.22384 1.00595 1.00473 0.94540 1.20879 0.87472 0.91803 0.97358 1.44400 1.07601 1.71914 1.09025 1.18903 0.95943 1.30368 0.93758 0.89627 1.25278 0.95720 0.98614 0.97864 1.69834 1.01382 1.45001 1.38771 0.86982 0.78350 0.78270 0.85283 1.21522 1.23101 1.19475 1.21330 1.00266 0.91303 0.86855 1.22430 0.95147 1.00555 1.00182 1.04582 0.74473 0.74132 0.75424 1.52955 1.70976 1.46597 1.21604 1.93663 1.29799 1.85794 1.84238 1.93557 1.77151 1.40122 1.82846 0.92748 0.92238 0.92445 0.91282 0.87535 0.89748 0.89306 0.91707 0.88982 0.91996 0.88155 0.91391 0.92413 0.95708 0.91378 0.92720 0.95426 0.90461 0.92018 0.91063 0.75038 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.17 -1.22 5.65 -26.73 -0.15 -1.37 16 3 C -0.09 -0.66 4.21 -26.73 -0.11 -0.77 16 4 C -0.62 -5.50 1.92 -27.88 -0.05 -5.55 16 5 H 0.16 1.01 6.35 -51.93 -0.33 0.68 16 6 C 0.53 6.56 6.43 -10.98 -0.07 6.49 16 7 O -0.53 -7.58 14.83 5.55 0.08 -7.50 16 8 N -0.59 -7.68 2.76 -173.88 -0.48 -8.16 16 9 C 0.07 0.69 8.94 59.85 0.53 1.22 16 10 C 0.14 2.25 2.48 -67.89 -0.17 2.08 16 11 C -0.14 -2.17 5.34 -26.61 -0.14 -2.31 16 12 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 13 N -0.61 -14.00 2.77 -172.32 -0.48 -14.48 16 14 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 16 C 0.02 0.70 5.23 -17.43 -0.09 0.60 16 17 N -0.91 -27.52 13.97 55.49 0.78 -26.75 16 18 Si 0.88 22.28 24.35 -169.99 -4.14 18.14 16 19 H -0.29 -7.04 6.62 56.52 0.37 -6.66 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.27 -6.72 6.64 56.52 0.38 -6.34 16 22 C 0.13 2.78 4.20 -3.71 -0.02 2.76 16 23 C -0.14 -2.53 5.31 -26.61 -0.14 -2.68 16 24 S 2.63 26.31 5.38 -107.50 -0.58 25.74 16 25 N -1.24 -10.32 9.13 60.35 0.55 -9.76 16 26 O -0.95 -12.75 17.33 -57.54 -1.00 -13.75 16 27 O -0.95 -10.58 14.89 -57.54 -0.86 -11.43 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.90 4.89 -51.93 -0.25 0.64 16 33 H 0.08 0.61 6.96 -51.93 -0.36 0.24 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.03 6.45 -51.93 -0.34 0.70 16 37 H 0.06 0.53 5.67 -51.93 -0.29 0.24 16 38 H 0.10 1.71 6.90 -51.93 -0.36 1.35 16 39 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 45 H 0.08 1.83 4.50 -51.93 -0.23 1.60 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.25 6.72 -51.93 -0.35 0.91 16 48 H 0.42 3.26 6.95 -34.47 -0.24 3.02 16 49 H 0.42 2.74 8.96 -34.48 -0.31 2.43 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.91 378.69 -8.29 -43.20 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.66 Total: 3.61 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.22 Total: -4.56 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.37 Total: -59.15 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.77 Total: -32.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Atomic # 16 Polarization: 26.31 SS G_CDS: -0.58 Total: 25.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.91 -8.29 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660783894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.379 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds