Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09005 * 109.87742 * 59.55946 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47004 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.46723 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46723 * 180.02562 * 22 21 20 24 24 S 1.81402 * 109.46965 * 179.97438 * 23 22 21 25 25 N 1.65604 * 104.44622 * 179.97438 * 24 23 22 26 26 O 1.42102 * 110.54143 * 291.61824 * 24 23 22 27 27 O 1.42099 * 110.54449 * 68.37656 * 24 23 22 28 28 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 30 30 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 31 31 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 32 32 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 33 33 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 34 34 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 35 35 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 36 36 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 37 37 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 38 38 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 39 39 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 40 40 H 1.09003 * 109.46660 * 299.99961 * 20 19 17 41 41 H 1.08996 * 109.46929 * 59.99922 * 20 19 17 42 42 H 1.09000 * 109.46624 * 299.99943 * 21 20 19 43 43 H 1.08994 * 109.47253 * 59.99731 * 21 20 19 44 44 H 1.09000 * 109.47486 * 299.99368 * 22 21 20 45 45 H 1.08994 * 109.47513 * 59.99844 * 22 21 20 46 46 H 1.09003 * 109.46996 * 299.99238 * 23 22 21 47 47 H 1.08996 * 109.47725 * 59.99893 * 23 22 21 48 48 H 0.96994 * 120.00193 * 359.97438 * 25 24 23 49 49 H 0.97009 * 119.99744 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3598 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4150 -6.8225 -0.7001 21 6 -0.9534 -7.1522 -1.3000 22 6 -1.3498 -8.5782 -0.9126 23 6 -2.7178 -8.9082 -1.5130 24 16 -3.1876 -10.5992 -1.0543 25 7 -4.6689 -10.8224 -1.7601 26 8 -2.3450 -11.5434 -1.7007 27 8 -3.4480 -10.6835 0.3401 28 1 -0.4850 0.8401 -0.0004 29 1 3.5882 0.6085 1.3159 30 1 3.9853 -0.8595 2.2604 31 1 5.6145 0.4559 0.0179 32 1 6.1786 -0.1043 1.6281 33 1 6.4982 -1.7148 -0.5464 34 1 5.9823 -2.4244 1.0170 35 1 4.7845 -4.1720 -0.5977 36 1 4.0045 -3.7334 0.9409 37 1 2.2444 -3.1989 -1.2385 38 1 0.0685 -4.6965 -0.7035 39 1 0.8608 -5.3143 -2.1727 40 1 1.1575 -7.5224 -1.0834 41 1 0.3653 -6.9039 0.3857 42 1 -1.6960 -6.4522 -0.9171 43 1 -0.9032 -7.0709 -2.3858 44 1 -0.6072 -9.2785 -1.2951 45 1 -1.4000 -8.6591 0.1732 46 1 -3.4608 -8.2080 -1.1308 47 1 -2.6672 -8.8274 -2.5988 48 1 -5.0719 -10.1081 -2.2781 49 1 -5.1337 -11.6674 -1.6555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663553565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = -104.927080 kcal Electronic energy + Delta-G solvation = -28256.918563 eV Core-core repulsion = 24153.132660 eV Total energy + Delta-G solvation = -4103.785903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -39.35168 -37.94578 -37.29889 -36.33030 -36.17496 -33.95013 -33.57776 -32.74264 -32.53835 -30.03804 -29.61303 -27.66039 -25.03484 -23.96711 -22.75111 -21.30358 -20.85050 -19.86932 -19.75798 -19.33524 -17.93767 -17.64453 -17.25920 -16.65812 -16.29764 -16.06172 -15.80767 -15.60127 -15.30530 -14.99538 -14.58224 -14.00963 -13.71217 -13.52865 -13.33785 -13.07657 -12.64060 -12.52585 -12.47340 -12.46711 -12.39263 -12.25375 -12.09800 -11.94985 -11.81755 -11.37472 -11.31763 -11.22175 -11.18873 -10.93709 -10.83390 -10.77542 -10.68040 -10.58092 -10.50909 -10.21881 -9.89699 -9.60782 -9.28726 -8.68415 -8.33699 -6.86685 -6.09959 -3.59457 -0.11835 2.50529 3.18348 3.24557 3.28325 3.37944 3.42942 3.78656 3.92887 4.13364 4.42217 4.52381 4.68505 4.88608 4.94269 5.04887 5.07500 5.10808 5.30194 5.32211 5.39850 5.40529 5.48515 5.51833 5.57228 5.70816 5.73078 5.80897 5.89206 5.92636 5.93408 6.08610 6.10070 6.23214 6.26579 6.31817 6.37271 6.39455 6.53126 6.60641 6.80707 6.83603 7.10248 7.82584 8.16437 8.22482 8.69310 8.81930 9.53772 10.15005 11.03651 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.001822 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.205245 B =15360.597348 C =16520.581729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.035 3.965 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.258 4.258 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.709 5.709 17 C 0.508 3.492 18 O -0.565 6.565 19 C -0.142 4.142 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.617 4.617 24 S 2.611 3.389 25 N -1.254 6.254 26 O -0.965 6.965 27 O -0.963 6.963 28 H 0.265 0.735 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.414 0.586 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.412 0.588 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 -13.880 -6.660 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.166 4.166 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.386 4.386 8 H 0.108 0.892 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.363 5.363 17 C 0.295 3.705 18 O -0.445 6.445 19 C -0.182 4.182 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.747 4.747 24 S 2.703 3.297 25 N -0.927 5.927 26 O -0.954 6.954 27 O -0.953 6.953 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.238 0.762 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.375 -14.986 -5.603 16.351 hybrid contribution -0.523 2.040 -0.697 2.218 sum -3.898 -12.947 -6.300 14.916 Atomic orbital electron populations 1.69762 1.05798 1.26939 1.52064 1.25504 0.95211 0.98180 0.97681 0.86619 0.79903 0.83672 0.77070 1.21555 1.23280 1.19268 1.18668 0.80628 0.93685 1.45603 0.89181 1.44653 1.03726 1.45742 1.38712 1.21903 0.90700 0.95227 0.92930 1.22780 0.97576 0.96840 1.00250 1.22488 0.96339 0.97028 1.00130 1.21284 0.89076 0.89564 0.96440 0.93438 1.21866 0.83761 0.96776 0.98553 1.46320 1.21185 1.15181 1.53596 1.20612 0.87411 0.81968 0.80549 1.90630 1.64434 1.48408 1.40990 1.21654 0.95593 0.98868 1.02075 1.21337 0.95709 0.95328 1.01921 1.21574 0.97762 0.94506 1.01249 1.21362 0.92075 1.00136 1.01681 1.30396 1.08595 1.23606 1.12131 1.04832 0.73430 0.76934 0.74477 1.53173 1.41062 1.26192 1.72242 1.93618 1.67094 1.58349 1.76347 1.93624 1.83585 1.85996 1.32050 0.92526 0.94186 0.95168 0.91573 0.91565 0.91436 0.91322 0.93121 0.91935 0.74659 0.88376 0.89335 0.91218 0.90953 0.91056 0.91375 0.89990 0.89849 0.84456 0.84597 0.76215 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.97 55.49 0.78 -25.07 16 2 C 0.04 0.96 5.48 -17.43 -0.10 0.86 16 3 Si 0.90 21.56 24.76 -169.99 -4.21 17.35 16 4 H -0.29 -6.91 6.86 56.52 0.39 -6.52 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.22 6.76 56.52 0.38 -5.84 16 7 C -0.26 -6.56 9.42 -15.06 -0.14 -6.70 16 8 H 0.09 2.33 5.44 -52.48 -0.29 2.05 16 9 N -0.60 -13.32 2.65 -162.56 -0.43 -13.75 16 10 C 0.12 2.41 6.14 -2.53 -0.02 2.39 16 11 C -0.14 -2.23 7.09 -24.58 -0.17 -2.40 16 12 C -0.12 -1.83 6.48 -24.89 -0.16 -1.99 16 13 C 0.14 2.61 3.34 -66.95 -0.22 2.39 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.12 2.09 5.19 -4.04 -0.02 2.07 16 16 N -0.71 -12.85 4.36 -60.30 -0.26 -13.12 16 17 C 0.51 9.03 7.83 -10.98 -0.09 8.94 16 18 O -0.56 -11.66 15.97 5.56 0.09 -11.58 16 19 C -0.14 -1.94 5.70 -27.88 -0.16 -2.09 16 20 C -0.10 -1.27 4.50 -26.73 -0.12 -1.39 16 21 C -0.11 -1.01 5.21 -26.73 -0.14 -1.15 16 22 C -0.11 -0.92 5.22 -26.73 -0.14 -1.06 16 23 C -0.62 -3.21 6.09 37.16 0.23 -2.99 16 24 S 2.61 19.19 5.97 -107.50 -0.64 18.55 16 25 N -1.25 -4.96 9.43 60.35 0.57 -4.39 16 26 O -0.96 -10.93 18.10 -57.54 -1.04 -11.97 16 27 O -0.96 -11.21 18.10 -57.54 -1.04 -12.25 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 0.90 3.20 -51.93 -0.17 0.73 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.11 7.95 -51.93 -0.41 0.69 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 37 H 0.41 7.63 6.07 -40.82 -0.25 7.39 16 38 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 47 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.41 0.40 8.83 -34.47 -0.30 0.10 16 49 H 0.42 1.40 8.96 -34.48 -0.31 1.09 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -37.61 398.50 -9.50 -47.11 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.06 Total: 6.25 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.25 Total: -3.13 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.65 Total: -56.33 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.99 Total: -35.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.21 Total: 17.35 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.64 Total: 18.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.61 -9.50 -47.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663553565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.821 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds