Wall clock time and date at job start Wed Apr 1 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00176 * 2 1 4 4 H 1.48497 * 109.46998 * 87.03233 * 3 2 1 5 5 H 1.48494 * 109.46953 * 327.03242 * 3 2 1 6 6 H 1.48499 * 109.46972 * 207.03367 * 3 2 1 7 7 C 1.38816 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 13.27865 * 7 2 1 9 9 N 1.36935 * 120.00046 * 193.27249 * 7 2 1 10 10 C 1.47421 * 125.64756 * 38.74084 * 9 7 2 11 11 C 1.54915 * 104.83326 * 204.09162 * 10 9 7 12 12 C 1.55157 * 101.58216 * 322.99285 * 11 10 9 13 13 C 1.47027 * 125.64987 * 218.43406 * 9 7 2 14 14 H 1.09005 * 109.87742 * 59.55946 * 13 9 7 15 15 C 1.52997 * 109.87930 * 298.39539 * 13 9 7 16 16 N 1.46498 * 109.47289 * 61.76565 * 15 13 9 17 17 C 1.34783 * 120.00101 * 186.21316 * 16 15 13 18 18 O 1.21282 * 119.99561 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46864 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47004 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.46723 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46723 * 180.02562 * 22 21 20 24 24 S 1.81402 * 109.46965 * 179.97438 * 23 22 21 25 25 N 1.65604 * 104.44622 * 179.97438 * 24 23 22 26 26 O 1.42102 * 110.54143 * 291.61824 * 24 23 22 27 27 O 1.42099 * 110.54449 * 68.37656 * 24 23 22 28 28 H 0.97007 * 119.99787 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36735 * 322.92889 * 10 9 7 30 30 H 1.08994 * 110.37048 * 85.25449 * 10 9 7 31 31 H 1.09003 * 111.00198 * 81.06140 * 11 10 9 32 32 H 1.08997 * 111.00224 * 204.91648 * 11 10 9 33 33 H 1.08993 * 110.72404 * 153.86068 * 12 11 10 34 34 H 1.09000 * 110.71576 * 276.96177 * 12 11 10 35 35 H 1.09001 * 109.47102 * 181.75940 * 15 13 9 36 36 H 1.08997 * 109.47024 * 301.76136 * 15 13 9 37 37 H 0.97005 * 120.00230 * 6.20774 * 16 15 13 38 38 H 1.09000 * 109.47585 * 300.00202 * 19 17 16 39 39 H 1.08994 * 109.46939 * 60.00219 * 19 17 16 40 40 H 1.09003 * 109.46660 * 299.99961 * 20 19 17 41 41 H 1.08996 * 109.46929 * 59.99922 * 20 19 17 42 42 H 1.09000 * 109.46624 * 299.99943 * 21 20 19 43 43 H 1.08994 * 109.47253 * 59.99731 * 21 20 19 44 44 H 1.09000 * 109.47486 * 299.99368 * 22 21 20 45 45 H 1.08994 * 109.47513 * 59.99844 * 22 21 20 46 46 H 1.09003 * 109.46996 * 299.99238 * 23 22 21 47 47 H 1.08996 * 109.47725 * 59.99893 * 23 22 21 48 48 H 0.96994 * 120.00193 * 359.97438 * 25 24 23 49 49 H 0.97009 * 119.99744 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4349 2.0826 1.3982 5 1 1.4805 2.6337 -0.7618 6 1 3.5777 1.4228 -0.6364 7 6 2.0102 -1.2022 0.0005 8 1 1.4918 -2.1251 -0.2139 9 7 3.3521 -1.2180 0.2728 10 6 4.0342 -0.3854 1.2802 11 6 5.5031 -0.3000 0.7954 12 6 5.7252 -1.7245 0.2219 13 6 4.3503 -2.0726 -0.3867 14 1 4.3598 -1.8723 -1.4581 15 6 4.0235 -3.5455 -0.1326 16 7 2.7133 -3.8611 -0.7069 17 6 2.1592 -5.0717 -0.4966 18 8 2.7452 -5.8994 0.1685 19 6 0.8112 -5.3962 -1.0870 20 6 0.4150 -6.8225 -0.7001 21 6 -0.9534 -7.1522 -1.3000 22 6 -1.3498 -8.5782 -0.9126 23 6 -2.7178 -8.9082 -1.5130 24 16 -3.1876 -10.5992 -1.0543 25 7 -4.6689 -10.8224 -1.7601 26 8 -2.3450 -11.5434 -1.7007 27 8 -3.4480 -10.6835 0.3401 28 1 -0.4850 0.8401 -0.0004 29 1 3.5882 0.6085 1.3159 30 1 3.9853 -0.8595 2.2604 31 1 5.6145 0.4559 0.0179 32 1 6.1786 -0.1043 1.6281 33 1 6.4982 -1.7148 -0.5464 34 1 5.9823 -2.4244 1.0170 35 1 4.7845 -4.1720 -0.5977 36 1 4.0045 -3.7334 0.9409 37 1 2.2444 -3.1989 -1.2385 38 1 0.0685 -4.6965 -0.7035 39 1 0.8608 -5.3143 -2.1727 40 1 1.1575 -7.5224 -1.0834 41 1 0.3653 -6.9039 0.3857 42 1 -1.6960 -6.4522 -0.9171 43 1 -0.9032 -7.0709 -2.3858 44 1 -0.6072 -9.2785 -1.2951 45 1 -1.4000 -8.6591 0.1732 46 1 -3.4608 -8.2080 -1.1308 47 1 -2.6672 -8.8274 -2.5988 48 1 -5.0719 -10.1081 -2.2781 49 1 -5.1337 -11.6674 -1.6555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663553565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:27 Heat of formation + Delta-G solvation = -135.748564 kcal Electronic energy + Delta-G solvation = -28258.255082 eV Core-core repulsion = 24153.132660 eV Total energy + Delta-G solvation = -4105.122423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.79468 -39.43559 -38.03335 -37.10931 -36.92578 -35.42900 -34.62400 -33.98702 -33.46118 -31.76641 -30.98626 -28.60424 -26.55772 -25.49922 -23.78476 -22.39502 -21.97872 -21.40216 -20.78657 -20.31534 -19.00924 -18.44832 -18.15427 -17.93516 -17.48847 -17.31508 -16.81205 -16.76984 -16.28929 -16.19568 -15.92198 -15.38970 -14.89927 -14.72714 -14.65166 -14.35814 -14.16046 -13.84850 -13.60856 -13.39422 -13.20129 -13.12633 -13.06439 -13.02859 -12.98806 -12.94531 -12.66945 -12.55454 -12.25853 -12.06604 -12.02613 -12.00260 -11.72669 -11.50988 -11.44526 -11.42437 -11.36981 -11.23449 -10.72030 -10.67569 -9.85569 -8.69152 -8.14122 -5.59853 -0.68560 1.32427 1.41620 1.52406 1.76317 2.01954 2.41063 2.49878 2.74005 3.09814 3.35535 3.46371 3.54008 3.88824 3.91952 3.92294 3.95002 4.01847 4.14479 4.18158 4.32474 4.40654 4.48899 4.53035 4.58983 4.69355 4.74143 4.74307 4.84378 4.88614 4.92267 4.95315 4.99952 5.00487 5.12973 5.14907 5.31697 5.31898 5.35874 5.46581 5.48365 5.65692 5.93273 6.23355 6.40516 6.71345 6.84287 7.37542 7.56539 8.24939 9.01996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.001822 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.205245 B =15360.597348 C =16520.581729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.020 4.020 3 Si 0.948 3.052 4 H -0.291 1.291 5 H -0.315 1.315 6 H -0.252 1.252 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.112 4.112 13 C 0.140 3.860 14 H 0.052 0.948 15 C 0.120 3.880 16 N -0.713 5.713 17 C 0.500 3.500 18 O -0.598 6.598 19 C -0.135 4.135 20 C -0.103 4.103 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.597 4.597 24 S 2.621 3.379 25 N -1.240 6.240 26 O -1.010 7.010 27 O -1.014 7.014 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.412 0.588 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.163 0.837 47 H 0.169 0.831 48 H 0.428 0.572 49 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -13.450 -8.261 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.217 4.217 3 Si 0.780 3.220 4 H -0.219 1.219 5 H -0.245 1.245 6 H -0.176 1.176 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.150 4.150 13 C 0.034 3.966 14 H 0.070 0.930 15 C -0.006 4.006 16 N -0.366 5.366 17 C 0.288 3.712 18 O -0.480 6.480 19 C -0.175 4.175 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.729 4.729 24 S 2.717 3.283 25 N -0.917 5.917 26 O -0.999 6.999 27 O -1.003 7.003 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.251 0.749 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.181 0.819 47 H 0.187 0.813 48 H 0.258 0.742 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.189 -14.584 -7.209 16.415 hybrid contribution -0.851 1.859 -0.179 2.052 sum -3.040 -12.725 -7.388 15.025 Atomic orbital electron populations 1.69873 1.07121 1.27158 1.55127 1.26062 0.95730 1.00967 0.98940 0.85766 0.79271 0.80384 0.76620 1.21948 1.24452 1.17634 1.18786 0.82335 0.93081 1.42730 0.90402 1.44835 1.03390 1.46465 1.39791 1.22068 0.93504 0.93783 0.92712 1.22753 0.94760 0.97597 1.01309 1.22520 0.94953 0.96274 1.01229 1.21486 0.89937 0.88560 0.96590 0.93035 1.21819 0.84330 0.97138 0.97268 1.46420 1.21395 1.15303 1.53447 1.21356 0.88536 0.81328 0.79932 1.90608 1.65642 1.49275 1.42480 1.21700 0.92792 0.99539 1.03474 1.21325 0.97747 0.94273 1.00797 1.21533 0.95651 0.94919 1.02345 1.21431 0.93827 0.99773 1.01562 1.30207 1.07473 1.21087 1.14169 1.04161 0.73436 0.77456 0.73274 1.52771 1.39911 1.27077 1.71958 1.93565 1.68668 1.60993 1.76711 1.93568 1.84355 1.87168 1.35188 0.92994 0.96017 0.95588 0.91559 0.88444 0.88130 0.90182 0.91199 0.94282 0.74879 0.88742 0.86525 0.91720 0.93153 0.90456 0.89182 0.90025 0.90799 0.81862 0.81313 0.74227 0.74623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.40 13.97 21.65 0.30 -55.09 16 2 C -0.02 -1.11 5.48 84.86 0.46 -0.64 16 3 Si 0.95 44.69 24.76 68.60 1.70 46.39 16 4 H -0.29 -13.71 6.86 99.48 0.68 -13.02 16 5 H -0.32 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.25 -11.05 6.76 99.48 0.67 -10.38 16 7 C -0.24 -12.24 9.42 84.03 0.79 -11.45 16 8 H 0.08 4.10 5.44 -2.91 -0.02 4.08 16 9 N -0.62 -26.67 2.65 -668.23 -1.77 -28.44 16 10 C 0.10 4.09 6.14 86.86 0.53 4.62 16 11 C -0.13 -3.65 7.09 31.99 0.23 -3.43 16 12 C -0.11 -2.92 6.48 31.79 0.21 -2.72 16 13 C 0.14 4.80 3.34 45.34 0.15 4.95 16 14 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 15 C 0.12 4.17 5.19 86.38 0.45 4.62 16 16 N -0.71 -25.56 4.36 -463.06 -2.02 -27.58 16 17 C 0.50 17.75 7.83 87.66 0.69 18.43 16 18 O -0.60 -24.97 15.97 -3.04 -0.05 -25.01 16 19 C -0.14 -3.59 5.70 29.85 0.17 -3.42 16 20 C -0.10 -2.46 4.50 30.60 0.14 -2.32 16 21 C -0.11 -1.69 5.21 30.59 0.16 -1.53 16 22 C -0.13 -1.88 5.22 30.59 0.16 -1.72 16 23 C -0.60 -4.67 6.09 71.98 0.44 -4.23 16 24 S 2.62 37.03 5.97 -56.49 -0.34 36.69 16 25 N -1.24 -7.94 9.43 37.02 0.35 -7.59 16 26 O -1.01 -22.98 18.10 -127.65 -2.31 -25.29 16 27 O -1.01 -24.12 18.10 -127.65 -2.31 -26.43 16 28 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 29 H 0.02 0.95 3.20 -2.39 -0.01 0.94 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.94 7.95 -2.39 -0.02 1.93 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 1.95 7.85 -2.39 -0.02 1.93 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 37 H 0.41 15.09 6.07 -92.70 -0.56 14.52 16 38 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.43 -0.24 8.83 -96.75 -0.85 -1.10 16 49 H 0.42 2.39 8.96 -96.73 -0.87 1.52 16 Total: -1.00 -84.14 398.50 -3.24 -87.38 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -1.37 Total: 23.81 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.57 Total: 1.18 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -3.14 Total: -118.71 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -4.67 Total: -76.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.70 Total: 46.39 kcal Atomic # 16 Polarization: 37.03 SS G_CDS: -0.34 Total: 36.69 kcal Total: -84.14 -3.24 -87.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663553565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.372 kcal (2) G-P(sol) polarization free energy of solvation -84.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds