Wall clock time and date at job start Wed Apr 1 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99881 * 2 1 4 4 H 1.48507 * 109.47035 * 239.99999 * 3 2 1 5 5 H 1.48499 * 109.47426 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47170 * 120.00213 * 3 2 1 7 7 C 1.38950 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00527 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00371 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47578 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46862 * 305.00661 * 15 14 13 17 17 O 1.42905 * 109.46980 * 64.99788 * 15 14 13 18 18 C 1.52997 * 109.47482 * 185.00096 * 15 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14 20 20 C 1.34771 * 119.99622 * 179.97438 * 19 18 15 21 21 O 1.21280 * 120.00597 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99622 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.54459 * 59.82688 * 22 20 19 24 24 C 1.53180 * 109.54599 * 299.56016 * 22 20 19 25 25 C 1.53090 * 109.16380 * 183.15104 * 24 22 20 26 26 O 1.42908 * 109.41607 * 57.61095 * 25 24 22 27 27 C 1.42905 * 114.09635 * 298.84193 * 26 25 24 28 28 C 1.53097 * 109.41748 * 61.15538 * 27 26 25 29 29 H 0.96992 * 119.99832 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99601 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46907 * 60.00280 * 12 10 9 32 32 H 1.08993 * 109.47205 * 300.00122 * 12 10 9 33 33 H 1.00895 * 111.00123 * 303.95629 * 13 12 10 34 34 H 1.09001 * 109.46871 * 59.99686 * 14 13 12 35 35 H 1.09004 * 109.46883 * 300.00718 * 14 13 12 36 36 H 0.96696 * 114.00036 * 60.00352 * 17 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 15 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 19 18 15 40 40 H 1.08998 * 109.52101 * 303.05790 * 24 22 20 41 41 H 1.08992 * 109.52100 * 63.24344 * 24 22 20 42 42 H 1.08997 * 109.48622 * 297.62735 * 25 24 22 43 43 H 1.08999 * 109.49009 * 177.59219 * 25 24 22 44 44 H 1.09000 * 109.48129 * 301.17550 * 27 26 25 45 45 H 1.08995 * 109.49380 * 181.14416 * 27 26 25 46 46 H 1.08998 * 109.52205 * 182.48741 * 28 27 26 47 47 H 1.09000 * 109.52258 * 62.29639 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2709 -0.0008 15 6 2.5230 -8.4068 -0.0009 16 1 3.2041 -8.2816 -0.8427 17 8 3.2649 -8.3792 1.2202 18 6 1.7978 -9.7481 -0.1267 19 7 2.7792 -10.8358 -0.1274 20 6 2.3672 -12.1150 -0.2289 21 8 1.1841 -12.3657 -0.3200 22 6 3.3768 -13.2338 -0.2302 23 9 4.1081 -13.2058 0.9621 24 6 4.3267 -13.0656 -1.4201 25 6 5.2983 -14.2480 -1.4587 26 8 4.5588 -15.4679 -1.5444 27 6 3.6886 -15.7018 -0.4352 28 6 2.6523 -14.5777 -0.3554 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6169 -4.9209 -0.8897 32 1 0.6175 -4.9205 0.8902 33 1 2.8327 -5.9124 -0.7825 34 1 0.8729 -7.3450 -0.8905 35 1 0.8736 -7.3455 0.8894 36 1 2.7216 -8.4852 2.0130 37 1 1.2318 -9.7692 -1.0581 38 1 1.1168 -9.8732 0.7151 39 1 3.7254 -10.6353 -0.0542 40 1 3.7505 -13.0372 -2.3449 41 1 4.8870 -12.1372 -1.3103 42 1 5.9022 -14.2521 -0.5513 43 1 5.9491 -14.1558 -2.3282 44 1 4.2714 -15.7248 0.4856 45 1 3.1797 -16.6565 -0.5672 46 1 2.0153 -14.7306 0.5157 47 1 2.0423 -14.5798 -1.2587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667832150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:24 Heat of formation + Delta-G solvation = -218.524740 kcal Electronic energy + Delta-G solvation = -30093.603184 eV Core-core repulsion = 25418.678141 eV Total energy + Delta-G solvation = -4674.925043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.52928 -40.43732 -39.20245 -38.52790 -37.89528 -35.12433 -34.65657 -33.81350 -33.72260 -31.85315 -31.26454 -30.45083 -27.71624 -26.27270 -24.82962 -24.32019 -23.26876 -22.07454 -21.69709 -20.42331 -19.29556 -18.59494 -17.92558 -17.30578 -17.17867 -16.65118 -16.52039 -16.40498 -15.84700 -15.67593 -15.66516 -15.35728 -15.15628 -14.98290 -14.57778 -14.40030 -14.37976 -13.80409 -13.48328 -13.31746 -13.27926 -13.14233 -13.08835 -12.92599 -12.65033 -12.52256 -12.04071 -11.90593 -11.59545 -11.52695 -11.33533 -11.23198 -11.19673 -11.03000 -10.56135 -10.45481 -10.32659 -10.22503 -9.96961 -9.61793 -9.51736 -8.49450 -8.11276 -7.98021 -6.43373 -3.84382 1.91013 2.40987 3.19114 3.24927 3.27483 3.29347 3.58934 3.70490 3.83603 3.88810 3.97085 4.10345 4.18284 4.23002 4.25328 4.58423 4.60055 4.67631 4.72486 4.84382 4.86271 4.96821 5.04723 5.05657 5.09552 5.19790 5.25612 5.25632 5.28474 5.40863 5.44599 5.54834 5.72612 5.76061 5.84438 5.91691 6.22321 6.56847 6.88194 7.08654 7.42732 7.53497 7.55731 7.59813 8.04129 8.59248 9.16014 9.52052 10.03548 10.74240 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.001453 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.579520 B =19260.412495 C =19607.463815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.030 3.970 15 C 0.101 3.899 16 H 0.105 0.895 17 O -0.542 6.542 18 C 0.085 3.915 19 N -0.709 5.709 20 C 0.502 3.498 21 O -0.522 6.522 22 C 0.108 3.892 23 F -0.188 7.188 24 C -0.177 4.177 25 C 0.061 3.939 26 O -0.379 6.379 27 C 0.059 3.941 28 C -0.160 4.160 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.350 0.650 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.376 0.624 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -30.168 -2.072 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.291 5.291 14 C -0.101 4.101 15 C 0.041 3.959 16 H 0.123 0.877 17 O -0.347 6.347 18 C -0.040 4.040 19 N -0.361 5.361 20 C 0.285 3.715 21 O -0.397 6.397 22 C 0.086 3.914 23 F -0.169 7.169 24 C -0.215 4.215 25 C -0.015 4.015 26 O -0.297 6.297 27 C -0.018 4.018 28 C -0.198 4.198 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.223 0.777 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.245 0.755 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.139 -30.177 -1.988 30.524 hybrid contribution -0.793 1.244 -0.164 1.484 sum 3.346 -28.933 -2.152 29.205 Atomic orbital electron populations 1.69604 1.05941 1.28290 1.50484 1.25265 0.95640 0.99736 0.97250 0.85906 0.78751 0.80396 0.79089 1.19922 1.20970 1.19859 1.19664 0.93375 0.82243 1.47768 0.87946 1.41852 1.09186 1.04592 1.64346 1.19772 0.88394 0.84686 0.84631 1.90533 1.13719 1.87016 1.55326 1.21689 0.94292 0.91042 1.01190 1.59965 1.18458 0.99216 1.51458 1.22568 0.95629 0.90285 1.01582 1.22102 0.93849 0.90718 0.89264 0.87684 1.86639 1.37300 1.95741 1.15030 1.22180 0.91801 0.86385 1.03598 1.45847 1.11570 1.05314 1.73402 1.20685 0.89655 0.84005 0.77194 1.90751 1.16972 1.83630 1.48382 1.21189 0.90887 0.96189 0.83118 1.92930 1.78603 1.97515 1.47841 1.22848 0.98989 1.01741 0.97887 1.22582 0.92854 0.82712 1.03396 1.87976 1.57711 1.39667 1.44373 1.22650 0.91007 0.98131 0.89976 1.22600 0.99138 0.91965 1.06131 0.91808 0.77470 0.93897 0.89596 0.83041 0.94360 0.90358 0.77660 0.90110 0.90580 0.75476 0.88396 0.88840 0.92031 0.87622 0.92236 0.87685 0.88762 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 10 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16 11 O -0.58 -15.80 15.78 5.55 0.09 -15.71 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 N -0.66 -10.03 6.07 -115.06 -0.70 -10.73 16 14 C 0.03 0.31 5.32 -3.83 -0.02 0.29 16 15 C 0.10 0.89 3.23 -26.74 -0.09 0.80 16 16 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 17 O -0.54 -5.62 13.03 -35.23 -0.46 -6.08 16 18 C 0.08 0.67 5.34 -4.04 -0.02 0.64 16 19 N -0.71 -5.54 5.36 -60.29 -0.32 -5.86 16 20 C 0.50 4.69 6.88 -10.99 -0.08 4.62 16 21 O -0.52 -6.52 15.97 5.56 0.09 -6.43 16 22 C 0.11 0.81 1.07 -91.58 -0.10 0.71 16 23 F -0.19 -1.60 16.07 2.25 0.04 -1.57 16 24 C -0.18 -0.98 5.08 -26.59 -0.14 -1.11 16 25 C 0.06 0.34 6.72 37.20 0.25 0.59 16 26 O -0.38 -2.82 10.77 -35.23 -0.38 -3.19 16 27 C 0.06 0.36 6.72 37.21 0.25 0.61 16 28 C -0.16 -1.12 4.52 -26.59 -0.12 -1.24 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.38 2.95 9.05 45.56 0.41 3.36 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.41 2.75 7.87 -40.82 -0.32 2.43 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16 42 H 0.06 0.33 7.93 -51.93 -0.41 -0.08 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16 45 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -34.86 396.16 -6.81 -41.67 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -6.36 Total: 14.98 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.41 Total: 8.93 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.36 Total: -54.53 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.66 Total: -31.41 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.86 -6.81 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667832150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.854 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds