Wall clock time and date at job start Wed Apr 1 2020 04:40:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31418 * 1
3 3 Si 1.86797 * 119.99881 * 2 1
4 4 H 1.48507 * 109.47035 * 239.99999 * 3 2 1
5 5 H 1.48499 * 109.47426 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.47170 * 120.00213 * 3 2 1
7 7 C 1.38950 * 120.00023 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00240 * 179.97438 * 7 2 1
9 9 N 1.37097 * 120.00225 * 359.97438 * 7 2 1
10 10 C 1.34769 * 120.00527 * 180.02562 * 9 7 2
11 11 O 1.21291 * 119.99914 * 0.02562 * 10 9 7
12 12 C 1.50698 * 120.00371 * 179.97438 * 10 9 7
13 13 N 1.46903 * 109.47148 * 179.97438 * 12 10 9
14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10
15 15 C 1.52992 * 109.47578 * 180.02562 * 14 13 12
16 16 H 1.08998 * 109.46862 * 305.00661 * 15 14 13
17 17 O 1.42905 * 109.46980 * 64.99788 * 15 14 13
18 18 C 1.52997 * 109.47482 * 185.00096 * 15 14 13
19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14
20 20 C 1.34771 * 119.99622 * 179.97438 * 19 18 15
21 21 O 1.21280 * 120.00597 * 0.02562 * 20 19 18
22 22 C 1.50701 * 119.99622 * 179.97438 * 20 19 18
23 23 F 1.39902 * 109.54459 * 59.82688 * 22 20 19
24 24 C 1.53180 * 109.54599 * 299.56016 * 22 20 19
25 25 C 1.53090 * 109.16380 * 183.15104 * 24 22 20
26 26 O 1.42908 * 109.41607 * 57.61095 * 25 24 22
27 27 C 1.42905 * 114.09635 * 298.84193 * 26 25 24
28 28 C 1.53097 * 109.41748 * 61.15538 * 27 26 25
29 29 H 0.96992 * 119.99832 * 359.97438 * 1 2 3
30 30 H 0.97004 * 119.99601 * 0.02562 * 9 7 2
31 31 H 1.09001 * 109.46907 * 60.00280 * 12 10 9
32 32 H 1.08993 * 109.47205 * 300.00122 * 12 10 9
33 33 H 1.00895 * 111.00123 * 303.95629 * 13 12 10
34 34 H 1.09001 * 109.46871 * 59.99686 * 14 13 12
35 35 H 1.09004 * 109.46883 * 300.00718 * 14 13 12
36 36 H 0.96696 * 114.00036 * 60.00352 * 17 15 14
37 37 H 1.09002 * 109.47153 * 59.99783 * 18 15 14
38 38 H 1.09001 * 109.46832 * 299.99974 * 18 15 14
39 39 H 0.96996 * 119.99606 * 0.02562 * 19 18 15
40 40 H 1.08998 * 109.52101 * 303.05790 * 24 22 20
41 41 H 1.08992 * 109.52100 * 63.24344 * 24 22 20
42 42 H 1.08997 * 109.48622 * 297.62735 * 25 24 22
43 43 H 1.08999 * 109.49009 * 177.59219 * 25 24 22
44 44 H 1.09000 * 109.48129 * 301.17550 * 27 26 25
45 45 H 1.08995 * 109.49380 * 181.14416 * 27 26 25
46 46 H 1.08998 * 109.52205 * 182.48741 * 28 27 26
47 47 H 1.09000 * 109.52258 * 62.29639 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.1019 1.6964 -1.2126
5 1 1.2832 2.7465 -0.0006
6 1 3.1019 1.6964 1.2125
7 6 2.0089 -1.2033 -0.0005
8 1 3.0889 -1.2034 -0.0010
9 7 1.3235 -2.3907 -0.0005
10 6 1.9973 -3.5578 -0.0005
11 8 3.2102 -3.5579 -0.0001
12 6 1.2438 -4.8629 0.0000
13 7 2.1985 -5.9795 -0.0007
14 6 1.4982 -7.2709 -0.0008
15 6 2.5230 -8.4068 -0.0009
16 1 3.2041 -8.2816 -0.8427
17 8 3.2649 -8.3792 1.2202
18 6 1.7978 -9.7481 -0.1267
19 7 2.7792 -10.8358 -0.1274
20 6 2.3672 -12.1150 -0.2289
21 8 1.1841 -12.3657 -0.3200
22 6 3.3768 -13.2338 -0.2302
23 9 4.1081 -13.2058 0.9621
24 6 4.3267 -13.0656 -1.4201
25 6 5.2983 -14.2480 -1.4587
26 8 4.5588 -15.4679 -1.5444
27 6 3.6886 -15.7018 -0.4352
28 6 2.6523 -14.5777 -0.3554
29 1 -0.4849 0.8400 0.0004
30 1 0.3535 -2.3906 -0.0005
31 1 0.6169 -4.9209 -0.8897
32 1 0.6175 -4.9205 0.8902
33 1 2.8327 -5.9124 -0.7825
34 1 0.8729 -7.3450 -0.8905
35 1 0.8736 -7.3455 0.8894
36 1 2.7216 -8.4852 2.0130
37 1 1.2318 -9.7692 -1.0581
38 1 1.1168 -9.8732 0.7151
39 1 3.7254 -10.6353 -0.0542
40 1 3.7505 -13.0372 -2.3449
41 1 4.8870 -12.1372 -1.3103
42 1 5.9022 -14.2521 -0.5513
43 1 5.9491 -14.1558 -2.3282
44 1 4.2714 -15.7248 0.4856
45 1 3.1797 -16.6565 -0.5672
46 1 2.0153 -14.7306 0.5157
47 1 2.0423 -14.5798 -1.2587
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001667832150.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:24
Heat of formation + Delta-G solvation = -218.524740 kcal
Electronic energy + Delta-G solvation = -30093.603184 eV
Core-core repulsion = 25418.678141 eV
Total energy + Delta-G solvation = -4674.925043 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.173 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-48.52928 -40.43732 -39.20245 -38.52790 -37.89528 -35.12433 -34.65657 -33.81350
-33.72260 -31.85315 -31.26454 -30.45083 -27.71624 -26.27270 -24.82962 -24.32019
-23.26876 -22.07454 -21.69709 -20.42331 -19.29556 -18.59494 -17.92558 -17.30578
-17.17867 -16.65118 -16.52039 -16.40498 -15.84700 -15.67593 -15.66516 -15.35728
-15.15628 -14.98290 -14.57778 -14.40030 -14.37976 -13.80409 -13.48328 -13.31746
-13.27926 -13.14233 -13.08835 -12.92599 -12.65033 -12.52256 -12.04071 -11.90593
-11.59545 -11.52695 -11.33533 -11.23198 -11.19673 -11.03000 -10.56135 -10.45481
-10.32659 -10.22503 -9.96961 -9.61793 -9.51736 -8.49450 -8.11276 -7.98021
-6.43373 -3.84382 1.91013 2.40987 3.19114 3.24927 3.27483 3.29347
3.58934 3.70490 3.83603 3.88810 3.97085 4.10345 4.18284 4.23002
4.25328 4.58423 4.60055 4.67631 4.72486 4.84382 4.86271 4.96821
5.04723 5.05657 5.09552 5.19790 5.25612 5.25632 5.28474 5.40863
5.44599 5.54834 5.72612 5.76061 5.84438 5.91691 6.22321 6.56847
6.88194 7.08654 7.42732 7.53497 7.55731 7.59813 8.04129 8.59248
9.16014 9.52052 10.03548 10.74240
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.035543 B = 0.001453 C = 0.001428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 787.579520 B =19260.412495 C =19607.463815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.023 3.977
3 Si 0.932 3.068
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.273 1.273
7 C -0.301 4.301
8 H 0.103 0.897
9 N -0.563 5.563
10 C 0.440 3.560
11 O -0.582 6.582
12 C 0.050 3.950
13 N -0.658 5.658
14 C 0.030 3.970
15 C 0.101 3.899
16 H 0.105 0.895
17 O -0.542 6.542
18 C 0.085 3.915
19 N -0.709 5.709
20 C 0.502 3.498
21 O -0.522 6.522
22 C 0.108 3.892
23 F -0.188 7.188
24 C -0.177 4.177
25 C 0.061 3.939
26 O -0.379 6.379
27 C 0.059 3.941
28 C -0.160 4.160
29 H 0.272 0.728
30 H 0.392 0.608
31 H 0.043 0.957
32 H 0.086 0.914
33 H 0.350 0.650
34 H 0.038 0.962
35 H 0.078 0.922
36 H 0.376 0.624
37 H 0.081 0.919
38 H 0.076 0.924
39 H 0.409 0.591
40 H 0.097 0.903
41 H 0.093 0.907
42 H 0.061 0.939
43 H 0.106 0.894
44 H 0.059 0.941
45 H 0.105 0.895
46 H 0.094 0.906
47 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.703 -30.168 -2.072 30.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.179 4.179
3 Si 0.759 3.241
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.199 1.199
7 C -0.431 4.431
8 H 0.121 0.879
9 N -0.200 5.200
10 C 0.225 3.775
11 O -0.466 6.466
12 C -0.082 4.082
13 N -0.291 5.291
14 C -0.101 4.101
15 C 0.041 3.959
16 H 0.123 0.877
17 O -0.347 6.347
18 C -0.040 4.040
19 N -0.361 5.361
20 C 0.285 3.715
21 O -0.397 6.397
22 C 0.086 3.914
23 F -0.169 7.169
24 C -0.215 4.215
25 C -0.015 4.015
26 O -0.297 6.297
27 C -0.018 4.018
28 C -0.198 4.198
29 H 0.082 0.918
30 H 0.225 0.775
31 H 0.061 0.939
32 H 0.104 0.896
33 H 0.170 0.830
34 H 0.056 0.944
35 H 0.096 0.904
36 H 0.223 0.777
37 H 0.099 0.901
38 H 0.094 0.906
39 H 0.245 0.755
40 H 0.116 0.884
41 H 0.112 0.888
42 H 0.080 0.920
43 H 0.124 0.876
44 H 0.078 0.922
45 H 0.123 0.877
46 H 0.112 0.888
47 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 4.139 -30.177 -1.988 30.524
hybrid contribution -0.793 1.244 -0.164 1.484
sum 3.346 -28.933 -2.152 29.205
Atomic orbital electron populations
1.69604 1.05941 1.28290 1.50484 1.25265 0.95640 0.99736 0.97250
0.85906 0.78751 0.80396 0.79089 1.19922 1.20970 1.19859 1.19664
0.93375 0.82243 1.47768 0.87946 1.41852 1.09186 1.04592 1.64346
1.19772 0.88394 0.84686 0.84631 1.90533 1.13719 1.87016 1.55326
1.21689 0.94292 0.91042 1.01190 1.59965 1.18458 0.99216 1.51458
1.22568 0.95629 0.90285 1.01582 1.22102 0.93849 0.90718 0.89264
0.87684 1.86639 1.37300 1.95741 1.15030 1.22180 0.91801 0.86385
1.03598 1.45847 1.11570 1.05314 1.73402 1.20685 0.89655 0.84005
0.77194 1.90751 1.16972 1.83630 1.48382 1.21189 0.90887 0.96189
0.83118 1.92930 1.78603 1.97515 1.47841 1.22848 0.98989 1.01741
0.97887 1.22582 0.92854 0.82712 1.03396 1.87976 1.57711 1.39667
1.44373 1.22650 0.91007 0.98131 0.89976 1.22600 0.99138 0.91965
1.06131 0.91808 0.77470 0.93897 0.89596 0.83041 0.94360 0.90358
0.77660 0.90110 0.90580 0.75476 0.88396 0.88840 0.92031 0.87622
0.92236 0.87685 0.88762 0.88248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16
2 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16
3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16
4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16
8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16
10 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16
11 O -0.58 -15.80 15.78 5.55 0.09 -15.71 16
12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16
13 N -0.66 -10.03 6.07 -115.06 -0.70 -10.73 16
14 C 0.03 0.31 5.32 -3.83 -0.02 0.29 16
15 C 0.10 0.89 3.23 -26.74 -0.09 0.80 16
16 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16
17 O -0.54 -5.62 13.03 -35.23 -0.46 -6.08 16
18 C 0.08 0.67 5.34 -4.04 -0.02 0.64 16
19 N -0.71 -5.54 5.36 -60.29 -0.32 -5.86 16
20 C 0.50 4.69 6.88 -10.99 -0.08 4.62 16
21 O -0.52 -6.52 15.97 5.56 0.09 -6.43 16
22 C 0.11 0.81 1.07 -91.58 -0.10 0.71 16
23 F -0.19 -1.60 16.07 2.25 0.04 -1.57 16
24 C -0.18 -0.98 5.08 -26.59 -0.14 -1.11 16
25 C 0.06 0.34 6.72 37.20 0.25 0.59 16
26 O -0.38 -2.82 10.77 -35.23 -0.38 -3.19 16
27 C 0.06 0.36 6.72 37.21 0.25 0.61 16
28 C -0.16 -1.12 4.52 -26.59 -0.12 -1.24 16
29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
30 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16
31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
33 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16
34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.38 2.95 9.05 45.56 0.41 3.36 16
37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.41 2.75 7.87 -40.82 -0.32 2.43 16
40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16
41 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16
42 H 0.06 0.33 7.93 -51.93 -0.41 -0.08 16
43 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16
44 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16
45 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
47 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16
LS Contribution 396.16 15.07 5.97 5.97
Total: -1.00 -34.86 396.16 -6.81 -41.67
By element:
Atomic # 1 Polarization: 21.34 SS G_CDS: -6.36 Total: 14.98 kcal
Atomic # 6 Polarization: 9.34 SS G_CDS: -0.41 Total: 8.93 kcal
Atomic # 7 Polarization: -54.17 SS G_CDS: -0.36 Total: -54.53 kcal
Atomic # 8 Polarization: -30.75 SS G_CDS: -0.66 Total: -31.41 kcal
Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.86 -6.81 -41.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667832150.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -176.854 kcal
(2) G-P(sol) polarization free energy of solvation -34.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -218.525 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds