Wall clock time and date at job start Wed Apr 1 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99881 * 2 1 4 4 H 1.48507 * 109.47035 * 239.99999 * 3 2 1 5 5 H 1.48499 * 109.47426 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47170 * 120.00213 * 3 2 1 7 7 C 1.38950 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00527 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00371 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47578 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46862 * 305.00661 * 15 14 13 17 17 O 1.42905 * 109.46980 * 64.99788 * 15 14 13 18 18 C 1.52997 * 109.47482 * 185.00096 * 15 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 15 14 20 20 C 1.34771 * 119.99622 * 179.97438 * 19 18 15 21 21 O 1.21280 * 120.00597 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99622 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.54459 * 59.82688 * 22 20 19 24 24 C 1.53180 * 109.54599 * 299.56016 * 22 20 19 25 25 C 1.53090 * 109.16380 * 183.15104 * 24 22 20 26 26 O 1.42908 * 109.41607 * 57.61095 * 25 24 22 27 27 C 1.42905 * 114.09635 * 298.84193 * 26 25 24 28 28 C 1.53097 * 109.41748 * 61.15538 * 27 26 25 29 29 H 0.96992 * 119.99832 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99601 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46907 * 60.00280 * 12 10 9 32 32 H 1.08993 * 109.47205 * 300.00122 * 12 10 9 33 33 H 1.00895 * 111.00123 * 303.95629 * 13 12 10 34 34 H 1.09001 * 109.46871 * 59.99686 * 14 13 12 35 35 H 1.09004 * 109.46883 * 300.00718 * 14 13 12 36 36 H 0.96696 * 114.00036 * 60.00352 * 17 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 18 15 14 38 38 H 1.09001 * 109.46832 * 299.99974 * 18 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 19 18 15 40 40 H 1.08998 * 109.52101 * 303.05790 * 24 22 20 41 41 H 1.08992 * 109.52100 * 63.24344 * 24 22 20 42 42 H 1.08997 * 109.48622 * 297.62735 * 25 24 22 43 43 H 1.08999 * 109.49009 * 177.59219 * 25 24 22 44 44 H 1.09000 * 109.48129 * 301.17550 * 27 26 25 45 45 H 1.08995 * 109.49380 * 181.14416 * 27 26 25 46 46 H 1.08998 * 109.52205 * 182.48741 * 28 27 26 47 47 H 1.09000 * 109.52258 * 62.29639 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2709 -0.0008 15 6 2.5230 -8.4068 -0.0009 16 1 3.2041 -8.2816 -0.8427 17 8 3.2649 -8.3792 1.2202 18 6 1.7978 -9.7481 -0.1267 19 7 2.7792 -10.8358 -0.1274 20 6 2.3672 -12.1150 -0.2289 21 8 1.1841 -12.3657 -0.3200 22 6 3.3768 -13.2338 -0.2302 23 9 4.1081 -13.2058 0.9621 24 6 4.3267 -13.0656 -1.4201 25 6 5.2983 -14.2480 -1.4587 26 8 4.5588 -15.4679 -1.5444 27 6 3.6886 -15.7018 -0.4352 28 6 2.6523 -14.5777 -0.3554 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3906 -0.0005 31 1 0.6169 -4.9209 -0.8897 32 1 0.6175 -4.9205 0.8902 33 1 2.8327 -5.9124 -0.7825 34 1 0.8729 -7.3450 -0.8905 35 1 0.8736 -7.3455 0.8894 36 1 2.7216 -8.4852 2.0130 37 1 1.2318 -9.7692 -1.0581 38 1 1.1168 -9.8732 0.7151 39 1 3.7254 -10.6353 -0.0542 40 1 3.7505 -13.0372 -2.3449 41 1 4.8870 -12.1372 -1.3103 42 1 5.9022 -14.2521 -0.5513 43 1 5.9491 -14.1558 -2.3282 44 1 4.2714 -15.7248 0.4856 45 1 3.1797 -16.6565 -0.5672 46 1 2.0153 -14.7306 0.5157 47 1 2.0423 -14.5798 -1.2587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667832150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:23 Heat of formation + Delta-G solvation = -249.916484 kcal Electronic energy + Delta-G solvation = -30094.964432 eV Core-core repulsion = 25418.678141 eV Total energy + Delta-G solvation = -4676.286291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.16081 -41.13921 -40.19614 -39.70896 -38.91607 -36.37125 -35.73145 -35.40965 -34.27959 -33.27192 -32.32809 -31.35569 -28.84963 -27.28089 -26.20407 -24.87480 -24.40036 -22.83856 -22.32738 -21.13550 -20.98456 -19.91960 -19.23875 -18.28670 -17.82240 -17.52445 -17.29970 -17.08097 -16.95406 -16.59293 -16.43974 -16.29614 -16.21020 -16.07502 -15.74657 -15.55070 -15.22920 -15.09717 -14.92817 -14.43609 -14.01276 -13.92871 -13.67032 -13.61813 -13.50435 -13.44349 -13.41379 -13.20135 -12.95510 -12.69892 -12.51088 -12.43640 -12.12594 -12.01227 -11.83242 -11.70210 -11.50502 -11.24029 -11.01682 -10.58788 -10.33544 -10.31245 -10.02023 -9.30191 -8.46967 -5.95924 1.19015 1.39914 1.41989 1.52823 1.74648 2.05187 2.29160 2.81159 2.87546 3.05409 3.17729 3.20329 3.32582 3.43688 3.55738 3.56459 3.77892 3.79420 3.96827 4.10445 4.14291 4.23978 4.31004 4.41664 4.43378 4.49115 4.51981 4.55619 4.56504 4.63962 4.71159 4.71459 4.85333 4.92105 5.01789 5.04248 5.16476 5.40378 5.85595 6.07900 6.12106 6.21609 6.36244 6.59758 6.81595 6.89308 7.12233 7.55892 8.11412 8.70059 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.001453 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.579520 B =19260.412495 C =19607.463815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.676 5.676 14 C 0.031 3.969 15 C 0.113 3.887 16 H 0.106 0.894 17 O -0.560 6.560 18 C 0.092 3.908 19 N -0.700 5.700 20 C 0.500 3.500 21 O -0.557 6.557 22 C 0.107 3.893 23 F -0.194 7.194 24 C -0.172 4.172 25 C 0.058 3.942 26 O -0.395 6.395 27 C 0.060 3.940 28 C -0.159 4.159 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.344 0.656 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.386 0.614 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.416 0.584 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.123 0.877 44 H 0.062 0.938 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -30.671 -2.341 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.308 5.308 14 C -0.099 4.099 15 C 0.053 3.947 16 H 0.124 0.876 17 O -0.367 6.367 18 C -0.032 4.032 19 N -0.352 5.352 20 C 0.284 3.716 21 O -0.435 6.435 22 C 0.086 3.914 23 F -0.175 7.175 24 C -0.210 4.210 25 C -0.019 4.019 26 O -0.314 6.314 27 C -0.016 4.016 28 C -0.198 4.198 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.163 0.837 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.235 0.765 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.107 0.893 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.056 -30.691 -2.246 31.039 hybrid contribution -0.765 1.352 -0.059 1.554 sum 3.292 -29.340 -2.305 29.613 Atomic orbital electron populations 1.69663 1.06806 1.29374 1.50199 1.26033 0.96545 1.02390 0.96198 0.84988 0.77761 0.76643 0.78937 1.19672 1.19464 1.19794 1.19644 0.92740 0.84114 1.50146 0.90342 1.41927 1.09329 1.04715 1.65050 1.20923 0.88280 0.86245 0.82217 1.90499 1.15925 1.87971 1.56625 1.21538 0.93947 0.88052 1.03153 1.59955 1.18797 1.00521 1.51535 1.22664 0.96005 0.88262 1.02932 1.21982 0.93380 0.90512 0.88857 0.87576 1.86615 1.38360 1.95790 1.15938 1.22081 0.91589 0.85761 1.03803 1.45812 1.11978 1.04975 1.72427 1.21006 0.89492 0.84642 0.76504 1.90733 1.18435 1.84175 1.50200 1.21242 0.90930 0.95642 0.83590 1.92917 1.78670 1.97502 1.48379 1.22867 0.98706 1.02609 0.96853 1.22740 0.92815 0.81986 1.04346 1.87954 1.57997 1.40541 1.44922 1.22720 0.90712 0.98351 0.89849 1.22587 0.99318 0.92257 1.05588 0.91286 0.76954 0.91425 0.87791 0.83748 0.92535 0.89304 0.76520 0.89730 0.90589 0.74689 0.88259 0.87317 0.91856 0.85908 0.92002 0.86244 0.89277 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.34 -19.11 9.68 84.04 0.81 -18.29 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.16 5.29 -307.00 -1.62 -30.79 16 10 C 0.44 20.46 7.82 87.66 0.69 21.15 16 11 O -0.62 -34.48 15.78 -3.07 -0.05 -34.53 16 12 C 0.07 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -19.54 6.07 -517.94 -3.15 -22.69 16 14 C 0.03 0.57 5.32 86.30 0.46 1.03 16 15 C 0.11 1.77 3.23 30.59 0.10 1.87 16 16 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 17 O -0.56 -10.75 13.03 -148.98 -1.94 -12.69 16 18 C 0.09 1.28 5.34 86.38 0.46 1.75 16 19 N -0.70 -9.96 5.36 -463.06 -2.48 -12.44 16 20 C 0.50 8.93 6.88 87.66 0.60 9.54 16 21 O -0.56 -13.71 15.97 -3.03 -0.05 -13.76 16 22 C 0.11 1.52 1.07 -11.42 -0.01 1.51 16 23 F -0.19 -3.12 16.07 44.97 0.72 -2.39 16 24 C -0.17 -1.66 5.08 30.68 0.16 -1.50 16 25 C 0.06 0.55 6.72 72.01 0.48 1.03 16 26 O -0.40 -5.41 10.77 -148.98 -1.60 -7.02 16 27 C 0.06 0.67 6.72 72.01 0.48 1.16 16 28 C -0.16 -2.17 4.52 30.69 0.14 -2.03 16 29 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.40 19.07 7.90 -92.70 -0.73 18.34 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.34 10.61 8.43 -89.70 -0.76 9.85 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.39 5.46 9.05 -74.06 -0.67 4.79 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.42 4.91 7.87 -92.71 -0.73 4.18 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.69 7.70 -2.39 -0.02 0.68 16 42 H 0.06 0.58 7.93 -2.39 -0.02 0.56 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.66 7.93 -2.39 -0.02 0.64 16 45 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.38 8.02 -2.39 -0.02 1.36 16 Total: -1.00 -75.31 396.16 -4.34 -79.65 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.85 Total: 41.23 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 5.37 Total: 19.68 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -6.97 Total: -114.93 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -3.64 Total: -67.99 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.72 Total: -2.39 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -75.31 -4.34 -79.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667832150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.263 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds