Wall clock time and date at job start Wed Apr 1 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08998 * 109.50163 * 305.00165 * 3 2 1 5 5 C 1.53192 * 109.49846 * 65.06928 * 3 2 1 6 6 N 1.46925 * 108.77821 * 174.57972 * 5 3 2 7 7 C 1.34779 * 120.62812 * 126.40991 * 6 5 3 8 8 O 1.21282 * 120.00098 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99826 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.47261 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47295 * 180.02562 * 10 9 7 12 12 S 1.65598 * 119.99923 * 165.00056 * 11 10 9 13 13 C 1.81399 * 104.45141 * 64.99952 * 12 11 10 14 14 O 1.42095 * 104.27772 * 181.06947 * 12 11 10 15 15 O 1.42100 * 104.27753 * 308.92969 * 12 11 10 16 16 C 1.46923 * 118.73976 * 306.39216 * 6 5 3 17 17 C 1.53194 * 108.77647 * 53.60911 * 16 6 5 18 18 C 1.53043 * 109.33394 * 305.37893 * 17 16 6 19 19 H 1.08997 * 109.43276 * 301.31227 * 18 17 16 20 20 N 1.46504 * 109.48409 * 181.35635 * 18 17 16 21 21 C 1.36936 * 120.00146 * 84.91354 * 20 18 17 22 22 H 1.07996 * 119.99809 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99872 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00307 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99887 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47243 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47340 * 119.99837 * 25 23 21 28 28 H 1.48503 * 109.47039 * 239.99916 * 25 23 21 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 34 34 H 1.09003 * 109.58572 * 294.37153 * 5 3 2 35 35 H 1.09000 * 109.58771 * 54.79465 * 5 3 2 36 36 H 1.08996 * 109.47432 * 300.00216 * 9 7 6 37 37 H 1.09003 * 109.47161 * 60.00847 * 9 7 6 38 38 H 1.09003 * 109.46734 * 300.00082 * 10 9 7 39 39 H 1.08999 * 109.46813 * 59.99639 * 10 9 7 40 40 H 0.97000 * 120.00122 * 345.00222 * 11 10 9 41 41 H 1.08999 * 109.47071 * 59.99865 * 13 12 11 42 42 H 1.08995 * 109.47439 * 180.02562 * 13 12 11 43 43 H 1.09005 * 109.47079 * 300.00006 * 13 12 11 44 44 H 1.09001 * 109.58317 * 173.38933 * 16 6 5 45 45 H 1.08994 * 109.58438 * 293.81521 * 16 6 5 46 46 H 1.08998 * 109.50126 * 65.31040 * 17 16 6 47 47 H 1.09002 * 109.49717 * 185.38608 * 17 16 6 48 48 H 0.97003 * 119.99543 * 264.91739 * 20 18 17 49 49 H 0.96997 * 120.00298 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6364 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4832 4.5573 1.5657 8 8 0.2870 4.4413 1.7290 9 6 2.1200 5.9225 1.6038 10 6 1.0448 6.9798 1.8628 11 7 1.6638 8.3071 1.8993 12 16 0.7206 9.6639 1.7908 13 6 -0.2903 9.6341 3.2968 14 8 1.6478 10.7397 1.8340 15 8 -0.0871 9.4383 0.6436 16 6 3.6933 3.5894 1.1514 17 6 4.0739 2.8882 -0.1564 18 6 3.5653 1.4451 -0.1241 19 1 4.0001 0.9264 0.7304 20 7 3.9556 0.7617 -1.3597 21 6 5.1939 0.1859 -1.4620 22 1 5.8825 0.2353 -0.6316 23 6 5.5638 -0.4611 -2.6330 24 7 4.7243 -0.5218 -3.6449 25 14 7.2527 -1.2471 -2.7723 26 1 7.9999 -1.0424 -1.5055 27 1 7.1020 -2.7022 -3.0279 28 1 7.9985 -0.6221 -3.8941 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 0.5510 2.2168 1.3558 35 1 1.9931 1.5389 2.1548 36 1 2.8613 5.9555 2.4023 37 1 2.6054 6.1239 0.6488 38 1 0.3033 6.9470 1.0646 39 1 0.5597 6.7783 2.8179 40 1 2.6262 8.3912 1.9870 41 1 0.3598 9.6593 4.1713 42 1 -0.9500 10.5016 3.3088 43 1 -0.8885 8.7230 3.3149 44 1 3.9651 4.6434 1.0933 45 1 4.2176 3.1201 1.9838 46 1 3.6207 3.4143 -0.9966 47 1 5.1582 2.8899 -0.2679 48 1 3.3369 0.7171 -2.1055 49 1 4.9829 -0.9736 -4.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670582182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:12 Heat of formation + Delta-G solvation = -105.971232 kcal Electronic energy + Delta-G solvation = -29202.289191 eV Core-core repulsion = 25098.458010 eV Total energy + Delta-G solvation = -4103.831181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.31283 -38.04970 -37.45210 -36.32839 -35.94477 -34.81314 -33.82751 -31.77632 -30.86671 -29.89777 -29.55078 -28.54230 -25.41086 -24.06899 -23.50509 -22.62022 -20.87418 -20.13598 -19.74815 -18.92475 -17.94733 -17.41503 -17.10681 -16.71434 -16.36675 -15.92934 -15.85216 -15.11787 -14.86684 -14.51829 -14.06588 -14.02774 -13.77625 -13.69283 -13.60489 -13.36351 -13.21407 -13.09024 -12.74108 -12.64828 -12.46002 -12.34779 -12.18094 -12.10350 -11.90447 -11.72168 -11.65351 -11.40615 -11.32768 -10.98049 -10.89136 -10.74766 -10.39780 -10.23006 -10.16885 -9.92186 -9.84315 -9.72480 -9.64000 -8.94809 -8.54987 -7.00762 -5.81644 -3.10594 -0.12335 2.27863 2.55877 3.02855 3.38998 3.42614 3.44569 3.47124 3.81114 4.22935 4.38149 4.43706 4.53635 4.59254 4.70942 4.94075 5.08002 5.12892 5.18542 5.21404 5.23420 5.29804 5.41062 5.49750 5.52272 5.56617 5.64419 5.64660 5.67963 5.85056 5.96857 6.08062 6.11387 6.26959 6.31497 6.35291 6.41967 6.50619 6.54769 6.63326 6.78281 6.91875 7.00886 7.42055 7.64895 8.11146 8.36406 9.48035 10.05251 10.39897 11.40734 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002192 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.560870 B =12769.826318 C =13840.616373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.604 5.604 7 C 0.517 3.483 8 O -0.550 6.550 9 C -0.149 4.149 10 C 0.129 3.871 11 N -1.122 6.122 12 S 2.617 3.383 13 C -0.674 4.674 14 O -0.961 6.961 15 O -0.954 6.954 16 C 0.105 3.895 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.047 0.953 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.418 0.582 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 16.055 16.709 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.337 5.337 7 C 0.305 3.695 8 O -0.428 6.428 9 C -0.190 4.190 10 C 0.002 3.998 11 N -0.882 5.882 12 S 2.709 3.291 13 C -0.824 4.824 14 O -0.951 6.951 15 O -0.944 6.944 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.065 0.935 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.252 0.748 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.757 16.504 16.095 24.660 hybrid contribution 1.190 -0.776 0.218 1.437 sum -7.567 15.728 16.313 23.890 Atomic orbital electron populations 1.21845 0.96788 1.01054 1.01311 1.21450 0.94391 0.95681 1.03466 1.21784 0.97636 0.96306 0.96743 0.91171 1.21768 0.99465 0.81333 0.97825 1.48178 1.08627 1.06837 1.70009 1.20324 0.86869 0.85911 0.76441 1.90691 1.14772 1.86698 1.50662 1.21824 0.99644 0.92167 1.05356 1.21062 0.95423 0.80136 1.03162 1.55590 1.20238 1.20347 1.91999 1.04637 0.74986 0.72812 0.76700 1.30528 1.16749 1.11763 1.23332 1.93624 1.60962 1.52858 1.87687 1.93640 1.71160 1.84655 1.44896 1.21912 0.79291 1.01218 0.99391 1.22700 1.02278 0.99375 0.95083 1.20180 0.90776 0.90502 0.91235 0.93464 1.42421 1.16479 1.64430 1.12722 1.19238 0.91767 1.27367 0.98575 0.91205 1.24737 0.98147 1.01533 0.96452 1.69666 1.35149 1.48346 1.04722 0.86160 0.83993 0.78910 0.77340 1.20614 1.21924 1.21934 0.92964 0.93172 0.93229 0.92484 0.89784 0.89066 0.91670 0.88132 0.87676 0.89103 0.90895 0.74766 0.85257 0.85340 0.85170 0.90405 0.91341 0.92109 0.90509 0.78183 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.62 1.92 -90.50 -0.17 -1.80 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.59 5.32 -3.71 -0.02 1.57 16 6 N -0.60 -7.44 2.97 -172.77 -0.51 -7.95 16 7 C 0.52 6.24 7.70 -10.99 -0.08 6.16 16 8 O -0.55 -8.28 15.40 5.56 0.09 -8.19 16 9 C -0.15 -1.18 4.19 -27.88 -0.12 -1.30 16 10 C 0.13 0.98 5.42 -4.04 -0.02 0.96 16 11 N -1.12 -6.79 5.89 -10.61 -0.06 -6.86 16 12 S 2.62 18.75 6.10 -107.50 -0.66 18.09 16 13 C -0.67 -2.53 10.89 101.05 1.10 -1.43 16 14 O -0.96 -9.95 18.08 -57.54 -1.04 -10.99 16 15 O -0.95 -11.02 17.50 -57.54 -1.01 -12.03 16 16 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 17 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 18 C 0.18 3.26 2.19 -67.88 -0.15 3.11 16 19 H 0.05 0.86 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.62 4.33 -53.38 -0.23 -16.85 16 21 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 25 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 34 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.11 0.79 7.69 -51.93 -0.40 0.39 16 38 H 0.09 0.86 7.65 -51.93 -0.40 0.47 16 39 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.42 1.82 8.62 -34.47 -0.30 1.52 16 41 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.38 9.67 7.51 -40.82 -0.31 9.36 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -35.92 401.11 -9.52 -45.45 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.18 Total: 7.54 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 0.33 Total: -4.43 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.08 Total: -58.10 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.96 Total: -31.21 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 18.75 SS G_CDS: -0.66 Total: 18.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.92 -9.52 -45.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.524 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds