Wall clock time and date at job start Wed Apr 1 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08998 * 109.50163 * 305.00165 * 3 2 1 5 5 C 1.53192 * 109.49846 * 65.06928 * 3 2 1 6 6 N 1.46925 * 108.77821 * 174.57972 * 5 3 2 7 7 C 1.34779 * 120.62812 * 126.40991 * 6 5 3 8 8 O 1.21282 * 120.00098 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99826 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.47261 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47295 * 180.02562 * 10 9 7 12 12 S 1.65598 * 119.99923 * 165.00056 * 11 10 9 13 13 C 1.81399 * 104.45141 * 64.99952 * 12 11 10 14 14 O 1.42095 * 104.27772 * 181.06947 * 12 11 10 15 15 O 1.42100 * 104.27753 * 308.92969 * 12 11 10 16 16 C 1.46923 * 118.73976 * 306.39216 * 6 5 3 17 17 C 1.53194 * 108.77647 * 53.60911 * 16 6 5 18 18 C 1.53043 * 109.33394 * 305.37893 * 17 16 6 19 19 H 1.08997 * 109.43276 * 301.31227 * 18 17 16 20 20 N 1.46504 * 109.48409 * 181.35635 * 18 17 16 21 21 C 1.36936 * 120.00146 * 84.91354 * 20 18 17 22 22 H 1.07996 * 119.99809 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99872 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00307 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99887 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47243 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47340 * 119.99837 * 25 23 21 28 28 H 1.48503 * 109.47039 * 239.99916 * 25 23 21 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 34 34 H 1.09003 * 109.58572 * 294.37153 * 5 3 2 35 35 H 1.09000 * 109.58771 * 54.79465 * 5 3 2 36 36 H 1.08996 * 109.47432 * 300.00216 * 9 7 6 37 37 H 1.09003 * 109.47161 * 60.00847 * 9 7 6 38 38 H 1.09003 * 109.46734 * 300.00082 * 10 9 7 39 39 H 1.08999 * 109.46813 * 59.99639 * 10 9 7 40 40 H 0.97000 * 120.00122 * 345.00222 * 11 10 9 41 41 H 1.08999 * 109.47071 * 59.99865 * 13 12 11 42 42 H 1.08995 * 109.47439 * 180.02562 * 13 12 11 43 43 H 1.09005 * 109.47079 * 300.00006 * 13 12 11 44 44 H 1.09001 * 109.58317 * 173.38933 * 16 6 5 45 45 H 1.08994 * 109.58438 * 293.81521 * 16 6 5 46 46 H 1.08998 * 109.50126 * 65.31040 * 17 16 6 47 47 H 1.09002 * 109.49717 * 185.38608 * 17 16 6 48 48 H 0.97003 * 119.99543 * 264.91739 * 20 18 17 49 49 H 0.96997 * 120.00298 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6364 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4832 4.5573 1.5657 8 8 0.2870 4.4413 1.7290 9 6 2.1200 5.9225 1.6038 10 6 1.0448 6.9798 1.8628 11 7 1.6638 8.3071 1.8993 12 16 0.7206 9.6639 1.7908 13 6 -0.2903 9.6341 3.2968 14 8 1.6478 10.7397 1.8340 15 8 -0.0871 9.4383 0.6436 16 6 3.6933 3.5894 1.1514 17 6 4.0739 2.8882 -0.1564 18 6 3.5653 1.4451 -0.1241 19 1 4.0001 0.9264 0.7304 20 7 3.9556 0.7617 -1.3597 21 6 5.1939 0.1859 -1.4620 22 1 5.8825 0.2353 -0.6316 23 6 5.5638 -0.4611 -2.6330 24 7 4.7243 -0.5218 -3.6449 25 14 7.2527 -1.2471 -2.7723 26 1 7.9999 -1.0424 -1.5055 27 1 7.1020 -2.7022 -3.0279 28 1 7.9985 -0.6221 -3.8941 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 0.5510 2.2168 1.3558 35 1 1.9931 1.5389 2.1548 36 1 2.8613 5.9555 2.4023 37 1 2.6054 6.1239 0.6488 38 1 0.3033 6.9470 1.0646 39 1 0.5597 6.7783 2.8179 40 1 2.6262 8.3912 1.9870 41 1 0.3598 9.6593 4.1713 42 1 -0.9500 10.5016 3.3088 43 1 -0.8885 8.7230 3.3149 44 1 3.9651 4.6434 1.0933 45 1 4.2176 3.1201 1.9838 46 1 3.6207 3.4143 -0.9966 47 1 5.1582 2.8899 -0.2679 48 1 3.3369 0.7171 -2.1055 49 1 4.9829 -0.9736 -4.4633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670582182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:11 Heat of formation + Delta-G solvation = -134.313778 kcal Electronic energy + Delta-G solvation = -29203.518216 eV Core-core repulsion = 25098.458010 eV Total energy + Delta-G solvation = -4105.060206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33251 -39.23436 -38.15459 -37.02175 -36.59125 -36.14939 -35.30119 -33.42550 -31.62094 -31.03023 -30.24252 -29.72822 -26.76506 -25.35814 -24.63144 -23.79948 -22.17471 -21.18025 -20.60902 -19.89161 -19.03273 -18.60848 -18.19938 -17.30790 -17.10460 -16.87122 -16.71115 -16.67678 -15.73938 -15.54672 -15.47172 -15.26925 -15.00687 -14.71019 -14.47430 -14.36864 -14.03748 -13.94613 -13.77986 -13.58999 -13.37838 -13.19125 -13.10746 -13.07808 -12.95818 -12.87616 -12.68740 -12.61158 -12.51749 -12.46378 -12.10076 -12.00243 -11.93296 -11.81808 -11.56358 -11.49975 -11.06479 -10.93246 -10.71572 -10.39594 -9.60828 -8.94151 -7.90026 -5.17237 -0.64585 1.48795 1.49314 1.58610 1.63703 1.72247 2.13687 2.58747 2.91686 3.30322 3.43449 3.53876 3.73527 3.81710 3.90728 4.04898 4.08316 4.11774 4.15850 4.23020 4.29078 4.38345 4.45310 4.49392 4.54724 4.59574 4.67638 4.78960 4.84463 4.87368 4.89766 4.95767 4.98232 5.04471 5.08190 5.12369 5.18712 5.31903 5.41426 5.49783 5.54025 5.61268 5.69950 6.15791 6.31553 6.47348 7.17670 7.37970 8.15107 8.37391 9.33768 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002192 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.560870 B =12769.826318 C =13840.616373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.094 4.094 4 H 0.048 0.952 5 C 0.126 3.874 6 N -0.608 5.608 7 C 0.513 3.487 8 O -0.583 6.583 9 C -0.145 4.145 10 C 0.128 3.872 11 N -1.114 6.114 12 S 2.623 3.377 13 C -0.653 4.653 14 O -0.997 6.997 15 O -1.007 7.007 16 C 0.114 3.886 17 C -0.146 4.146 18 C 0.177 3.823 19 H 0.048 0.952 20 N -0.732 5.732 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.966 3.034 26 H -0.263 1.263 27 H -0.299 1.299 28 H -0.299 1.299 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.427 0.573 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.369 0.631 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 17.299 20.210 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.114 4.114 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.340 5.340 7 C 0.303 3.697 8 O -0.463 6.463 9 C -0.185 4.185 10 C 0.001 3.999 11 N -0.875 5.875 12 S 2.719 3.281 13 C -0.807 4.807 14 O -0.988 6.988 15 O -0.997 6.997 16 C -0.009 4.009 17 C -0.187 4.187 18 C 0.069 3.931 19 H 0.066 0.934 20 N -0.371 5.371 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.187 1.187 27 H -0.227 1.227 28 H -0.226 1.226 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.264 0.736 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.201 0.799 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.153 17.787 19.624 27.712 hybrid contribution 0.932 -1.144 -0.768 1.663 sum -7.221 16.643 18.856 26.167 Atomic orbital electron populations 1.21777 0.94964 1.01831 1.01693 1.21357 0.95996 0.95404 1.01827 1.21633 0.95843 0.96335 0.97549 0.93305 1.21601 0.99352 0.82236 0.96561 1.48248 1.09151 1.06519 1.70047 1.21011 0.86473 0.86995 0.75250 1.90680 1.16351 1.87258 1.52039 1.21886 1.00159 0.89340 1.07160 1.21015 0.95108 0.80516 1.03239 1.55283 1.20761 1.19297 1.92128 1.04157 0.74522 0.72144 0.77234 1.30329 1.16469 1.13231 1.20628 1.93573 1.62384 1.54288 1.88557 1.93576 1.72071 1.85192 1.48873 1.21951 0.78610 1.03112 0.97224 1.22495 1.01317 0.97591 0.97267 1.20447 0.92323 0.91510 0.88812 0.93386 1.42627 1.15435 1.65039 1.14019 1.19625 0.92524 1.25356 0.98194 0.90304 1.25487 1.01533 1.03421 0.96680 1.69828 1.37008 1.50309 1.05182 0.85165 0.80327 0.77276 0.77571 1.18694 1.22707 1.22641 0.93803 0.92235 0.91553 0.91643 0.93750 0.89561 0.90062 0.84403 0.86975 0.91613 0.89161 0.73635 0.82778 0.83792 0.83925 0.86759 0.89339 0.93821 0.91470 0.79927 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.67 71.98 0.70 -3.15 16 2 C -0.11 -3.39 5.31 30.60 0.16 -3.22 16 3 C -0.09 -2.90 1.92 -10.72 -0.02 -2.92 16 4 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 5 C 0.13 3.14 5.32 86.36 0.46 3.60 16 6 N -0.61 -13.37 2.97 -818.91 -2.43 -15.81 16 7 C 0.51 11.08 7.70 87.66 0.67 11.76 16 8 O -0.58 -16.61 15.40 -3.04 -0.05 -16.66 16 9 C -0.14 -1.81 4.19 29.85 0.13 -1.68 16 10 C 0.13 1.66 5.42 86.38 0.47 2.13 16 11 N -1.11 -11.06 5.89 -187.49 -1.10 -12.17 16 12 S 2.62 34.65 6.10 -56.49 -0.34 34.31 16 13 C -0.65 -2.77 10.89 113.37 1.23 -1.54 16 14 O -1.00 -19.95 18.08 -127.65 -2.31 -22.26 16 15 O -1.01 -23.57 17.50 -127.65 -2.23 -25.80 16 16 C 0.11 2.14 6.34 86.36 0.55 2.68 16 17 C -0.15 -4.27 5.66 30.67 0.17 -4.10 16 18 C 0.18 6.24 2.19 45.02 0.10 6.34 16 19 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 20 N -0.73 -34.59 4.33 -322.81 -1.40 -35.99 16 21 C -0.22 -11.76 9.93 84.03 0.83 -10.93 16 22 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 25 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.54 6.70 -2.39 -0.02 1.52 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.75 7.22 -2.39 -0.02 1.73 16 34 H 0.09 2.30 5.72 -2.39 -0.01 2.29 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.14 0.73 7.94 -2.39 -0.02 0.72 16 37 H 0.11 1.31 7.69 -2.39 -0.02 1.29 16 38 H 0.07 1.20 7.65 -2.39 -0.02 1.19 16 39 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 40 H 0.43 2.58 8.62 -96.75 -0.83 1.75 16 41 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.11 1.38 5.93 -2.39 -0.01 1.37 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 48 H 0.37 19.49 7.51 -92.71 -0.70 18.79 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -81.60 401.11 -2.21 -83.81 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.57 Total: 26.92 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.92 Total: -4.99 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.65 Total: -122.43 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -4.59 Total: -64.73 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 34.65 SS G_CDS: -0.34 Total: 34.31 kcal Total: -81.60 -2.21 -83.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670582182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.505 kcal (2) G-P(sol) polarization free energy of solvation -81.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds