Wall clock time and date at job start Wed Apr 1 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99770 * 2 1 4 4 H 1.08001 * 120.00095 * 205.73322 * 3 2 1 5 5 C 1.38814 * 120.00415 * 25.74131 * 3 2 1 6 6 N 1.31623 * 119.99624 * 9.17573 * 5 3 2 7 7 Si 1.86794 * 120.00198 * 189.17910 * 5 3 2 8 8 H 1.48492 * 109.47116 * 359.97438 * 7 5 3 9 9 H 1.48507 * 109.46937 * 119.99880 * 7 5 3 10 10 H 1.48503 * 109.47147 * 239.99631 * 7 5 3 11 11 C 1.46503 * 119.99699 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.46038 * 299.99851 * 11 2 1 13 13 C 1.53192 * 109.31015 * 181.38932 * 12 11 2 14 14 N 1.46923 * 108.89499 * 305.29103 * 13 12 11 15 15 C 1.34769 * 120.63195 * 233.68325 * 14 13 12 16 16 O 1.21282 * 119.99900 * 175.18354 * 15 14 13 17 17 C 1.50699 * 120.00192 * 355.18171 * 15 14 13 18 18 C 1.53006 * 109.46892 * 79.52285 * 17 15 14 19 19 C 1.52999 * 109.47515 * 199.52482 * 17 15 14 20 20 N 1.46503 * 109.47026 * 319.52455 * 17 15 14 21 21 S 1.65603 * 119.99632 * 159.27411 * 20 17 15 22 22 C 1.81397 * 104.45038 * 59.86124 * 21 20 17 23 23 O 1.42100 * 104.27388 * 175.93151 * 21 20 17 24 24 O 1.42102 * 104.27839 * 303.78743 * 21 20 17 25 25 C 1.47203 * 118.55110 * 53.54115 * 14 13 12 26 26 C 1.53041 * 109.46214 * 60.07129 * 11 2 1 27 27 H 1.08998 * 109.47433 * 274.01662 * 1 2 3 28 28 H 1.08998 * 109.47543 * 34.02485 * 1 2 3 29 29 H 1.09004 * 109.46901 * 154.02230 * 1 2 3 30 30 H 0.96993 * 120.00293 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.44295 * 180.02562 * 11 2 1 32 32 H 1.08997 * 109.49917 * 61.43648 * 12 11 2 33 33 H 1.09000 * 109.52431 * 301.35410 * 12 11 2 34 34 H 1.09002 * 109.58546 * 65.15559 * 13 12 11 35 35 H 1.09000 * 109.58401 * 185.43214 * 13 12 11 36 36 H 1.08998 * 109.47077 * 60.00570 * 18 17 15 37 37 H 1.09003 * 109.46555 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.46986 * 299.99932 * 18 17 15 39 39 H 1.09001 * 109.47289 * 67.54582 * 19 17 15 40 40 H 1.08998 * 109.47293 * 187.55254 * 19 17 15 41 41 H 1.09006 * 109.46705 * 307.55042 * 19 17 15 42 42 H 0.96996 * 120.00270 * 339.27256 * 20 17 15 43 43 H 1.08998 * 109.47245 * 51.01719 * 22 21 20 44 44 H 1.09001 * 109.47142 * 171.01255 * 22 21 20 45 45 H 1.08993 * 109.47712 * 291.01431 * 22 21 20 46 46 H 1.08998 * 109.53480 * 186.66949 * 25 14 13 47 47 H 1.09001 * 109.67747 * 66.36951 * 25 14 13 48 48 H 1.09001 * 109.49412 * 298.55905 * 26 11 2 49 49 H 1.08994 * 109.49614 * 58.62381 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1493 1.2323 -0.4061 5 6 1.5589 2.3284 0.5221 6 7 0.4210 2.2400 1.1777 7 14 2.3787 3.9913 0.2941 8 1 3.6390 3.8208 -0.4724 9 1 1.4651 4.8959 -0.4492 10 1 2.6840 4.5791 1.6233 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6212 -3.3818 1.2623 14 7 2.3854 -4.0941 -0.0009 15 6 1.9585 -5.3724 0.0009 16 8 1.6838 -5.9214 -1.0451 17 6 1.8224 -6.1196 1.3025 18 6 0.5178 -5.7123 1.9904 19 6 1.8057 -7.6245 1.0274 20 7 2.9554 -5.7948 2.1727 21 16 2.8389 -6.0334 3.8073 22 6 2.5175 -7.8100 3.9837 23 8 4.1309 -5.7089 4.3017 24 8 1.6970 -5.2796 4.1910 25 6 2.6225 -3.3800 -1.2661 26 6 1.8289 -2.0698 -1.2515 27 1 -0.3634 0.0720 1.0251 28 1 -0.3634 0.8517 -0.5750 29 1 -0.3633 -0.9239 -0.4502 30 1 0.0084 3.0382 1.5429 31 1 3.2690 -1.0691 0.0000 32 1 0.7603 -2.2928 1.2363 33 1 2.0684 -1.4911 2.1393 34 1 3.6842 -3.1641 1.3662 35 1 2.2916 -4.0000 2.0974 36 1 -0.3251 -5.9539 1.3430 37 1 0.4193 -6.2531 2.9316 38 1 0.5298 -4.6402 2.1864 39 1 2.7834 -7.9379 0.6615 40 1 1.5736 -8.1597 1.9482 41 1 1.0479 -7.8481 0.2763 42 1 3.7737 -5.4401 1.7914 43 1 3.2565 -8.3714 3.4120 44 1 2.5837 -8.0885 5.0354 45 1 1.5194 -8.0376 3.6097 46 1 2.2921 -3.9980 -2.1009 47 1 3.6854 -3.1622 -1.3710 48 1 0.7616 -2.2910 -1.2404 49 1 2.0705 -1.4874 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676068516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:40 Heat of formation + Delta-G solvation = -55.180852 kcal Electronic energy + Delta-G solvation = -31386.662935 eV Core-core repulsion = 27285.034190 eV Total energy + Delta-G solvation = -4101.628745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.79379 -37.88387 -37.48804 -36.66346 -36.18016 -35.06169 -32.17157 -31.13923 -30.71759 -29.92555 -29.66635 -27.54465 -25.97280 -25.39432 -23.51912 -22.66457 -21.63504 -19.97982 -19.59058 -18.92585 -17.85213 -17.42295 -16.83746 -16.65079 -16.05372 -15.75116 -15.20738 -15.04911 -14.94589 -14.32639 -14.00676 -13.85683 -13.70074 -13.65253 -13.43868 -13.35677 -13.20954 -12.93414 -12.66769 -12.39721 -12.25773 -12.24078 -12.12264 -11.95326 -11.88096 -11.56991 -11.51775 -11.45328 -11.29198 -10.94214 -10.82585 -10.78481 -10.35733 -10.20340 -10.18209 -10.04179 -9.86300 -9.63046 -9.32948 -8.57644 -8.48232 -6.68210 -5.69406 -3.18585 -0.10096 2.12194 2.67105 2.94619 3.38762 3.45170 3.45947 3.47718 3.82157 4.07909 4.31681 4.45215 4.49776 4.51638 4.62601 4.80152 5.09566 5.15461 5.24717 5.29544 5.34552 5.40592 5.45921 5.49246 5.52400 5.64844 5.68353 5.71983 5.86350 5.91815 5.99943 6.11060 6.19288 6.29642 6.38331 6.50204 6.52935 6.63923 6.83171 7.00316 7.03876 7.42270 7.44519 7.78562 7.83426 8.09265 8.44671 9.27303 9.90007 10.40886 11.34910 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003251 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.903979 B = 8610.380087 C = 9520.529106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.179 3.821 12 C -0.145 4.145 13 C 0.085 3.915 14 N -0.594 5.594 15 C 0.524 3.476 16 O -0.541 6.541 17 C 0.162 3.838 18 C -0.178 4.178 19 C -0.167 4.167 20 N -1.111 6.111 21 S 2.608 3.392 22 C -0.680 4.680 23 O -0.955 6.955 24 O -0.941 6.941 25 C 0.113 3.887 26 C -0.146 4.146 27 H 0.029 0.971 28 H 0.039 0.961 29 H -0.003 1.003 30 H 0.251 0.749 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.424 0.576 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -23.177 3.311 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.070 3.930 12 C -0.186 4.186 13 C -0.038 4.038 14 N -0.326 5.326 15 C 0.309 3.691 16 O -0.418 6.418 17 C 0.070 3.930 18 C -0.236 4.236 19 C -0.226 4.226 20 N -0.872 5.872 21 S 2.700 3.300 22 C -0.829 4.829 23 O -0.945 6.945 24 O -0.931 6.931 25 C -0.009 4.009 26 C -0.186 4.186 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.260 0.740 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.264 -22.698 3.556 23.206 hybrid contribution 0.602 0.563 -0.397 0.914 sum 3.865 -22.135 3.160 22.691 Atomic orbital electron populations 1.20736 0.82857 0.95319 0.99134 1.43915 1.01723 1.00141 1.85913 1.19242 0.99845 0.86133 1.33281 0.91558 1.25101 0.97757 0.98669 0.97944 1.70057 1.18828 1.27507 1.38699 0.86199 0.78737 0.84360 0.77319 1.20355 1.21715 1.21714 1.20310 0.95991 0.86116 0.90575 1.22516 0.99983 0.94309 1.01765 1.22464 1.00555 0.95075 0.85730 1.48221 1.64673 1.11329 1.08422 1.20177 0.77187 0.81897 0.89888 1.90692 1.50191 1.68093 1.32794 1.20432 0.87264 0.95820 0.89452 1.22659 0.94592 1.05573 1.00810 1.22461 1.04668 0.92173 1.03288 1.56010 1.23696 1.80767 1.26736 1.05062 0.74648 0.77700 0.72636 1.30811 1.12437 1.27861 1.11833 1.93637 1.40139 1.82822 1.77902 1.93705 1.51839 1.66385 1.81201 1.21754 0.99864 0.93703 0.85598 1.22462 1.00243 0.94652 1.01249 0.95307 0.94199 0.98478 0.93838 0.91966 0.92032 0.90396 0.91493 0.88333 0.90116 0.90153 0.88951 0.91064 0.91249 0.89369 0.73981 0.84931 0.85182 0.84754 0.89611 0.91514 0.91966 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.03 59.85 0.48 4.53 16 2 N -0.60 -14.63 2.81 -173.44 -0.49 -15.11 16 3 C -0.26 -6.93 9.56 -15.06 -0.14 -7.08 16 4 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 5 C 0.00 0.10 5.16 -17.43 -0.09 0.01 16 6 N -0.91 -26.41 10.68 55.49 0.59 -25.82 16 7 Si 0.90 21.84 29.56 -169.99 -5.03 16.82 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.18 3.50 2.55 -67.89 -0.17 3.33 16 12 C -0.15 -2.57 5.34 -26.61 -0.14 -2.72 16 13 C 0.09 1.16 4.46 -3.71 -0.02 1.14 16 14 N -0.59 -8.01 2.96 -172.55 -0.51 -8.52 16 15 C 0.52 6.79 6.50 -10.99 -0.07 6.72 16 16 O -0.54 -8.44 15.30 5.56 0.09 -8.35 16 17 C 0.16 1.53 0.73 -132.97 -0.10 1.43 16 18 C -0.18 -1.75 6.85 37.16 0.25 -1.49 16 19 C -0.17 -1.19 7.91 37.16 0.29 -0.90 16 20 N -1.11 -9.23 3.09 -0.40 0.00 -9.23 16 21 S 2.61 21.69 5.46 -107.50 -0.59 21.10 16 22 C -0.68 -2.79 9.13 101.05 0.92 -1.87 16 23 O -0.95 -11.24 18.08 -57.54 -1.04 -12.28 16 24 O -0.94 -10.76 13.99 -57.54 -0.80 -11.57 16 25 C 0.11 1.60 6.45 -3.56 -0.02 1.58 16 26 C -0.15 -2.47 5.32 -26.61 -0.14 -2.61 16 27 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 28 H 0.04 1.06 7.35 -51.93 -0.38 0.68 16 29 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.06 1.23 7.88 -51.93 -0.41 0.82 16 32 H 0.06 1.15 7.72 -51.93 -0.40 0.74 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.22 2.83 -51.93 -0.15 1.08 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.63 5.32 -51.93 -0.28 0.35 16 38 H 0.09 1.11 6.11 -51.93 -0.32 0.80 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.29 4.70 -51.93 -0.24 0.05 16 41 H 0.09 0.72 7.62 -51.93 -0.40 0.33 16 42 H 0.42 3.31 7.60 -34.47 -0.26 3.04 16 43 H 0.13 0.35 8.12 -51.92 -0.42 -0.08 16 44 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.13 0.38 5.62 -51.93 -0.29 0.09 16 46 H 0.09 1.24 7.02 -51.93 -0.36 0.87 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 1.12 6.72 -51.93 -0.35 0.78 16 49 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -35.39 372.81 -8.59 -43.98 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.48 Total: 1.29 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 1.05 Total: 2.08 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.41 Total: -58.68 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.76 Total: -32.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Atomic # 16 Polarization: 21.69 SS G_CDS: -0.59 Total: 21.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.39 -8.59 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676068516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.203 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds