Wall clock time and date at job start Wed Apr 1 2020 05:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46861 * 2 1 4 4 C 1.52997 * 109.47266 * 239.99542 * 2 1 3 5 5 N 1.46501 * 109.46984 * 119.99693 * 2 1 3 6 6 S 1.65602 * 119.99990 * 39.39015 * 5 2 1 7 7 O 1.42104 * 104.27719 * 179.32441 * 6 5 2 8 8 O 1.42100 * 104.27867 * 307.18029 * 6 5 2 9 9 C 1.81402 * 104.44963 * 63.25538 * 6 5 2 10 10 C 1.52996 * 115.55076 * 63.15243 * 9 6 5 11 11 N 1.46503 * 109.47112 * 332.01444 * 10 9 6 12 12 C 1.34783 * 119.99928 * 186.14649 * 11 10 9 13 13 O 1.21586 * 119.99954 * 5.01303 * 12 11 10 14 14 N 1.34770 * 119.99885 * 185.01066 * 12 11 10 15 15 C 1.46501 * 119.99790 * 185.01673 * 14 12 11 16 16 C 1.53004 * 109.47014 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47105 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99864 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47212 * 59.99604 * 21 19 17 23 23 H 1.48502 * 109.46959 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47002 * 299.99580 * 21 19 17 25 25 C 1.53000 * 117.49495 * 277.48397 * 9 6 5 26 26 C 1.53003 * 117.49664 * 208.82223 * 9 6 5 27 27 H 1.08995 * 109.47190 * 300.00264 * 1 2 3 28 28 H 1.09001 * 109.46933 * 60.00438 * 1 2 3 29 29 H 1.09005 * 109.47029 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47096 * 175.14592 * 3 2 1 31 31 H 1.08998 * 109.47197 * 295.14157 * 3 2 1 32 32 H 1.08998 * 109.47548 * 55.15116 * 3 2 1 33 33 H 1.08993 * 109.47574 * 323.44169 * 4 2 1 34 34 H 1.09004 * 109.47000 * 83.44024 * 4 2 1 35 35 H 1.09002 * 109.47475 * 203.43681 * 4 2 1 36 36 H 0.96999 * 120.00068 * 219.38620 * 5 2 1 37 37 H 1.09004 * 109.46827 * 92.01067 * 10 9 6 38 38 H 1.08997 * 109.47595 * 212.01213 * 10 9 6 39 39 H 0.97000 * 120.00067 * 6.14166 * 11 10 9 40 40 H 0.97003 * 120.00501 * 5.02413 * 14 12 11 41 41 H 1.09001 * 109.47098 * 299.99606 * 15 14 12 42 42 H 1.08998 * 109.47366 * 60.00287 * 15 14 12 43 43 H 1.09006 * 109.46891 * 299.99787 * 16 15 14 44 44 H 1.08998 * 109.47378 * 59.99610 * 16 15 14 45 45 H 0.97006 * 120.00389 * 179.97438 * 20 19 17 46 46 H 1.08993 * 117.50479 * 359.97438 * 25 9 6 47 47 H 1.09004 * 117.49304 * 145.02456 * 25 9 6 48 48 H 1.08996 * 117.49967 * 214.97809 * 26 9 6 49 49 H 1.08997 * 117.50046 * 359.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 16 1.2493 -2.0538 1.7373 7 8 1.9955 -2.4464 2.8811 8 8 -0.1133 -1.6665 1.8490 9 6 1.4615 -3.2559 0.3954 10 6 2.9061 -3.6580 0.0920 11 7 3.8049 -2.5585 0.4521 12 6 5.1178 -2.6373 0.1574 13 8 5.5409 -3.5775 -0.4870 14 7 5.9616 -1.6739 0.5771 15 6 7.3672 -1.7008 0.1651 16 6 8.1005 -0.5045 0.7751 17 6 9.5463 -0.5319 0.3507 18 1 9.9062 -1.3236 -0.2896 19 6 10.4095 0.4538 0.7800 20 7 9.9711 1.4181 1.5594 21 14 12.2017 0.4195 0.2545 22 1 12.2848 0.4898 -1.2264 23 1 12.9134 1.5807 0.8465 24 1 12.8319 -0.8397 0.7264 25 6 0.4872 -3.1797 -0.7818 26 6 0.3804 -4.3255 0.2277 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1265 1.4438 0.0870 31 1 1.7494 1.9306 -0.9303 32 1 1.6074 1.9808 0.8433 33 1 1.3830 -1.5603 -1.4780 34 1 2.0504 -0.0280 -2.0902 35 1 3.0501 -1.0894 -1.0693 36 1 2.7921 -0.3493 1.6713 37 1 3.1659 -4.5441 0.6712 38 1 3.0069 -3.8763 -0.9711 39 1 3.4552 -1.7738 0.9025 40 1 5.6383 -0.9627 1.1521 41 1 7.8297 -2.6251 0.5114 42 1 7.4283 -1.6490 -0.9220 43 1 7.6381 0.4200 0.4291 44 1 8.0395 -0.5567 1.8621 45 1 10.5785 2.1114 1.8617 46 1 -0.2814 -2.4076 -0.7499 47 1 0.8755 -3.4165 -1.7725 48 1 0.6983 -5.3155 -0.0992 49 1 -0.4581 -4.3071 0.9239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681311451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:53 Heat of formation + Delta-G solvation = -55.444918 kcal Electronic energy + Delta-G solvation = -30810.407012 eV Core-core repulsion = 26708.766817 eV Total energy + Delta-G solvation = -4101.640195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.07201 -38.88387 -37.82592 -37.44296 -36.32314 -34.97239 -34.15525 -32.80510 -31.38881 -29.74364 -27.85049 -27.58208 -27.19637 -24.49144 -23.34981 -22.68055 -21.22750 -20.92349 -20.55252 -19.46277 -18.12199 -17.82176 -17.58672 -16.42222 -16.29228 -15.93565 -15.56089 -15.28014 -14.86481 -14.65040 -14.52571 -14.22775 -14.08682 -14.01083 -13.81848 -13.57240 -13.33258 -13.05615 -12.82105 -12.52330 -12.46101 -12.29178 -12.27092 -12.07608 -11.91313 -11.82732 -11.61828 -11.39709 -11.20202 -11.10267 -11.02594 -10.96580 -10.65401 -10.53978 -10.31950 -10.05463 -9.83097 -9.56878 -9.28361 -9.10682 -8.49473 -8.28537 -6.09058 -4.11772 -0.15176 2.11488 2.71721 2.92800 3.31429 3.35302 3.38803 3.41175 3.51886 3.64722 3.98629 4.05768 4.29594 4.32379 4.39485 4.54373 4.61931 4.66033 4.81273 4.90621 4.94840 5.14973 5.28036 5.32849 5.33543 5.39456 5.41552 5.49788 5.51919 5.54729 5.62130 5.81907 5.90697 6.04119 6.11224 6.25188 6.37536 6.38788 6.50723 6.76173 6.95897 7.08081 7.55080 7.62882 7.89677 8.22870 8.34980 8.88891 8.95138 9.52897 11.02498 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002778 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.595337 B =10077.859891 C =10710.620649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.171 3.829 3 C -0.152 4.152 4 C -0.197 4.197 5 N -1.109 6.109 6 S 2.641 3.359 7 O -0.945 6.945 8 O -0.946 6.946 9 C -0.667 4.667 10 C 0.202 3.798 11 N -0.768 5.768 12 C 0.703 3.297 13 O -0.594 6.594 14 N -0.737 5.737 15 C 0.139 3.861 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.123 4.123 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.384 0.616 40 H 0.392 0.608 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.652 -4.524 -4.367 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.255 4.255 5 N -0.872 5.872 6 S 2.732 3.268 7 O -0.935 6.935 8 O -0.936 6.936 9 C -0.756 4.756 10 C 0.077 3.923 11 N -0.436 5.436 12 C 0.403 3.597 13 O -0.472 6.472 14 N -0.390 5.390 15 C 0.017 3.983 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.160 4.160 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.256 0.744 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.228 0.772 40 H 0.225 0.775 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -25.746 -5.368 -4.127 26.622 hybrid contribution 1.452 0.796 -0.082 1.658 sum -24.295 -4.572 -4.209 25.077 Atomic orbital electron populations 1.22767 0.92946 1.04303 1.03691 1.20285 0.94270 0.93637 0.83478 1.22102 1.02282 0.93593 1.03091 1.22964 1.03769 1.01688 0.97111 1.56031 1.46339 1.44109 1.40736 1.04170 0.74365 0.74078 0.74200 1.93647 1.72352 1.82613 1.44903 1.93633 1.34612 1.79971 1.85364 1.32352 1.01028 1.21153 1.21056 1.20188 0.80584 0.89353 1.02191 1.45999 1.07745 1.23001 1.66846 1.15939 0.80307 0.83327 0.80105 1.90891 1.76712 1.34319 1.45291 1.45533 1.11303 1.28278 1.53893 1.21627 0.76418 1.01286 0.98990 1.19327 0.94978 0.91608 0.96546 1.21003 0.93686 1.10363 1.30968 0.92277 1.24988 0.99009 0.95309 0.94945 1.69944 1.35683 1.13251 1.34419 0.86570 0.84483 0.77539 0.78914 1.20133 1.21273 1.20106 1.23279 0.97606 1.01235 0.93868 1.23022 0.95235 0.95029 1.01999 0.90552 0.90999 0.90590 0.91298 0.90853 0.91628 0.90822 0.91005 0.90289 0.74358 0.90433 0.89714 0.77225 0.77526 0.92572 0.92761 0.95990 0.95881 0.92805 0.86077 0.86146 0.86173 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 6.99 37.16 0.26 -1.03 16 2 C 0.17 1.29 1.18 -131.82 -0.16 1.14 16 3 C -0.15 -1.09 8.57 37.16 0.32 -0.77 16 4 C -0.20 -1.48 7.69 37.16 0.29 -1.20 16 5 N -1.11 -9.75 3.30 0.54 0.00 -9.75 16 6 S 2.64 27.06 4.44 -107.50 -0.48 26.58 16 7 O -0.95 -13.29 17.90 -57.54 -1.03 -14.32 16 8 O -0.95 -10.58 14.09 -57.54 -0.81 -11.39 16 9 C -0.67 -5.41 1.62 -90.62 -0.15 -5.56 16 10 C 0.20 2.19 5.67 -4.04 -0.02 2.16 16 11 N -0.77 -9.94 3.45 -65.22 -0.22 -10.17 16 12 C 0.70 12.25 8.55 -86.92 -0.74 11.51 16 13 O -0.59 -12.47 16.31 5.29 0.09 -12.38 16 14 N -0.74 -13.03 5.56 -65.22 -0.36 -13.39 16 15 C 0.14 2.98 5.62 -4.04 -0.02 2.95 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.12 -0.66 6.47 -26.69 -0.17 -0.83 16 26 C -0.11 -0.63 10.01 -26.69 -0.27 -0.90 16 27 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.54 2.67 -51.93 -0.14 0.40 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.44 8.02 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 3.50 -51.93 -0.18 0.27 16 34 H 0.07 0.48 7.85 -51.93 -0.41 0.08 16 35 H 0.08 0.76 5.82 -51.93 -0.30 0.45 16 36 H 0.42 3.43 7.84 -34.47 -0.27 3.16 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.89 7.81 -51.93 -0.41 0.49 16 39 H 0.38 4.31 3.26 -40.29 -0.13 4.17 16 40 H 0.39 6.00 8.50 -40.82 -0.35 5.65 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.12 0.56 5.14 -51.93 -0.27 0.29 16 47 H 0.12 0.51 7.75 -51.93 -0.40 0.11 16 48 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -35.87 384.65 -9.97 -45.84 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.44 Total: 7.61 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.22 Total: -5.50 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.15 Total: -58.54 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.75 Total: -38.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 27.06 SS G_CDS: -0.48 Total: 26.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.87 -9.97 -45.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681311451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.605 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds