Wall clock time and date at job start Wed Apr 1 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46861 * 2 1 4 4 C 1.52997 * 109.47266 * 239.99542 * 2 1 3 5 5 N 1.46501 * 109.46984 * 119.99693 * 2 1 3 6 6 S 1.65602 * 119.99990 * 39.39015 * 5 2 1 7 7 O 1.42104 * 104.27719 * 179.32441 * 6 5 2 8 8 O 1.42100 * 104.27867 * 307.18029 * 6 5 2 9 9 C 1.81402 * 104.44963 * 63.25538 * 6 5 2 10 10 C 1.52996 * 115.55076 * 63.15243 * 9 6 5 11 11 N 1.46503 * 109.47112 * 332.01444 * 10 9 6 12 12 C 1.34783 * 119.99928 * 186.14649 * 11 10 9 13 13 O 1.21586 * 119.99954 * 5.01303 * 12 11 10 14 14 N 1.34770 * 119.99885 * 185.01066 * 12 11 10 15 15 C 1.46501 * 119.99790 * 185.01673 * 14 12 11 16 16 C 1.53004 * 109.47014 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47105 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99864 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00054 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47212 * 59.99604 * 21 19 17 23 23 H 1.48502 * 109.46959 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47002 * 299.99580 * 21 19 17 25 25 C 1.53000 * 117.49495 * 277.48397 * 9 6 5 26 26 C 1.53003 * 117.49664 * 208.82223 * 9 6 5 27 27 H 1.08995 * 109.47190 * 300.00264 * 1 2 3 28 28 H 1.09001 * 109.46933 * 60.00438 * 1 2 3 29 29 H 1.09005 * 109.47029 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47096 * 175.14592 * 3 2 1 31 31 H 1.08998 * 109.47197 * 295.14157 * 3 2 1 32 32 H 1.08998 * 109.47548 * 55.15116 * 3 2 1 33 33 H 1.08993 * 109.47574 * 323.44169 * 4 2 1 34 34 H 1.09004 * 109.47000 * 83.44024 * 4 2 1 35 35 H 1.09002 * 109.47475 * 203.43681 * 4 2 1 36 36 H 0.96999 * 120.00068 * 219.38620 * 5 2 1 37 37 H 1.09004 * 109.46827 * 92.01067 * 10 9 6 38 38 H 1.08997 * 109.47595 * 212.01213 * 10 9 6 39 39 H 0.97000 * 120.00067 * 6.14166 * 11 10 9 40 40 H 0.97003 * 120.00501 * 5.02413 * 14 12 11 41 41 H 1.09001 * 109.47098 * 299.99606 * 15 14 12 42 42 H 1.08998 * 109.47366 * 60.00287 * 15 14 12 43 43 H 1.09006 * 109.46891 * 299.99787 * 16 15 14 44 44 H 1.08998 * 109.47378 * 59.99610 * 16 15 14 45 45 H 0.97006 * 120.00389 * 179.97438 * 20 19 17 46 46 H 1.08993 * 117.50479 * 359.97438 * 25 9 6 47 47 H 1.09004 * 117.49304 * 145.02456 * 25 9 6 48 48 H 1.08996 * 117.49967 * 214.97809 * 26 9 6 49 49 H 1.08997 * 117.50046 * 359.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1962 6 16 1.2493 -2.0538 1.7373 7 8 1.9955 -2.4464 2.8811 8 8 -0.1133 -1.6665 1.8490 9 6 1.4615 -3.2559 0.3954 10 6 2.9061 -3.6580 0.0920 11 7 3.8049 -2.5585 0.4521 12 6 5.1178 -2.6373 0.1574 13 8 5.5409 -3.5775 -0.4870 14 7 5.9616 -1.6739 0.5771 15 6 7.3672 -1.7008 0.1651 16 6 8.1005 -0.5045 0.7751 17 6 9.5463 -0.5319 0.3507 18 1 9.9062 -1.3236 -0.2896 19 6 10.4095 0.4538 0.7800 20 7 9.9711 1.4181 1.5594 21 14 12.2017 0.4195 0.2545 22 1 12.2848 0.4898 -1.2264 23 1 12.9134 1.5807 0.8465 24 1 12.8319 -0.8397 0.7264 25 6 0.4872 -3.1797 -0.7818 26 6 0.3804 -4.3255 0.2277 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1265 1.4438 0.0870 31 1 1.7494 1.9306 -0.9303 32 1 1.6074 1.9808 0.8433 33 1 1.3830 -1.5603 -1.4780 34 1 2.0504 -0.0280 -2.0902 35 1 3.0501 -1.0894 -1.0693 36 1 2.7921 -0.3493 1.6713 37 1 3.1659 -4.5441 0.6712 38 1 3.0069 -3.8763 -0.9711 39 1 3.4552 -1.7738 0.9025 40 1 5.6383 -0.9627 1.1521 41 1 7.8297 -2.6251 0.5114 42 1 7.4283 -1.6490 -0.9220 43 1 7.6381 0.4200 0.4291 44 1 8.0395 -0.5567 1.8621 45 1 10.5785 2.1114 1.8617 46 1 -0.2814 -2.4076 -0.7499 47 1 0.8755 -3.4165 -1.7725 48 1 0.6983 -5.3155 -0.0992 49 1 -0.4581 -4.3071 0.9239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681311451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:52 Heat of formation + Delta-G solvation = -82.545465 kcal Electronic energy + Delta-G solvation = -30811.582180 eV Core-core repulsion = 26708.766817 eV Total energy + Delta-G solvation = -4102.815363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.27229 -39.72639 -38.56378 -38.26646 -37.21217 -36.63757 -35.33800 -34.76718 -32.09817 -31.54420 -28.45638 -28.32159 -28.15672 -26.33660 -23.80249 -23.46454 -22.95921 -22.14084 -21.47140 -20.37513 -19.27809 -18.62483 -18.45119 -18.36357 -17.18855 -17.04182 -16.75473 -16.48467 -16.24102 -15.66460 -15.42309 -15.40037 -15.23200 -14.90725 -14.81700 -14.55390 -14.33801 -14.26105 -14.03189 -13.68237 -13.38690 -13.21531 -13.15842 -12.92573 -12.83593 -12.76860 -12.53314 -12.49094 -12.44301 -12.27251 -12.22854 -12.02786 -11.76243 -11.68340 -11.61668 -11.50817 -11.26350 -11.07954 -10.59307 -10.56175 -10.36884 -9.78410 -8.22670 -6.32904 -0.93210 1.36428 1.42917 1.45094 1.52856 1.74014 2.07387 2.17385 2.42043 2.66521 2.89896 3.12222 3.22869 3.40045 3.49649 3.63583 3.75132 3.96225 4.04697 4.26103 4.35857 4.46793 4.50058 4.50807 4.54554 4.64331 4.75240 4.76894 4.84074 4.87339 4.92575 4.98999 5.01073 5.08320 5.22531 5.26538 5.30891 5.32363 5.46275 5.50009 5.53222 5.60355 5.76547 5.82146 5.87668 6.17814 6.79867 6.96051 7.36183 7.49907 8.88945 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002778 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.595337 B =10077.859891 C =10710.620649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.170 3.830 3 C -0.154 4.154 4 C -0.197 4.197 5 N -1.112 6.112 6 S 2.643 3.357 7 O -0.991 6.991 8 O -0.959 6.959 9 C -0.674 4.674 10 C 0.198 3.802 11 N -0.751 5.751 12 C 0.704 3.296 13 O -0.629 6.629 14 N -0.734 5.734 15 C 0.160 3.840 16 C 0.023 3.977 17 C -0.546 4.546 18 H 0.060 0.940 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.270 1.270 25 C -0.109 4.109 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.419 0.581 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.403 0.597 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.012 0.988 44 H 0.005 0.995 45 H 0.265 0.735 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.813 -4.922 -6.014 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.255 4.255 5 N -0.875 5.875 6 S 2.738 3.262 7 O -0.982 6.982 8 O -0.949 6.949 9 C -0.766 4.766 10 C 0.073 3.927 11 N -0.419 5.419 12 C 0.403 3.597 13 O -0.510 6.510 14 N -0.388 5.388 15 C 0.036 3.964 16 C -0.014 4.014 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.195 1.195 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.238 0.762 40 H 0.238 0.762 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.156 0.844 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.971 -5.730 -5.732 28.163 hybrid contribution 1.712 0.909 0.410 1.981 sum -25.259 -4.821 -5.322 26.260 Atomic orbital electron populations 1.22796 0.92335 1.04630 1.04145 1.20412 0.94715 0.93649 0.82939 1.22137 1.01624 0.93573 1.03919 1.22975 1.02759 1.02497 0.97298 1.55996 1.46205 1.44082 1.41212 1.03854 0.73772 0.74381 0.74226 1.93589 1.73201 1.83438 1.47926 1.93616 1.35027 1.80318 1.85909 1.31996 1.00257 1.22487 1.21835 1.20346 0.81502 0.88330 1.02503 1.45935 1.06331 1.23928 1.65737 1.16013 0.81417 0.82503 0.79739 1.90862 1.77665 1.35607 1.46911 1.45254 1.10195 1.29071 1.54318 1.21121 0.78025 0.99028 0.98252 1.19133 0.94437 0.92441 0.95407 1.21428 0.95262 1.10584 1.31202 0.92193 1.25857 1.03556 0.94850 0.94848 1.70053 1.37288 1.13880 1.35330 0.85510 0.78970 0.77750 0.78887 1.19167 1.20689 1.19501 1.23545 0.96035 1.01221 0.93804 1.23336 0.93769 0.95528 1.01740 0.91900 0.88803 0.90319 0.92299 0.89370 0.91636 0.89307 0.89912 0.92396 0.74315 0.91186 0.88925 0.76187 0.76199 0.93870 0.93190 0.97005 0.97624 0.92586 0.84933 0.84292 0.84399 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 6.99 71.98 0.50 -1.76 16 2 C 0.17 2.35 1.18 3.60 0.00 2.35 16 3 C -0.15 -2.06 8.57 71.98 0.62 -1.44 16 4 C -0.20 -2.58 7.69 71.98 0.55 -2.03 16 5 N -1.11 -19.20 3.30 -152.22 -0.50 -19.71 16 6 S 2.64 52.87 4.44 -56.49 -0.25 52.62 16 7 O -0.99 -28.49 17.90 -127.65 -2.28 -30.78 16 8 O -0.96 -20.63 14.09 -127.65 -1.80 -22.43 16 9 C -0.67 -9.73 1.62 -10.79 -0.02 -9.75 16 10 C 0.20 4.05 5.67 86.38 0.49 4.54 16 11 N -0.75 -19.23 3.45 -478.53 -1.65 -20.88 16 12 C 0.70 24.57 8.55 179.05 1.53 26.10 16 13 O -0.63 -26.48 16.31 -3.99 -0.07 -26.55 16 14 N -0.73 -26.32 5.56 -478.53 -2.66 -28.98 16 15 C 0.16 6.95 5.62 86.38 0.49 7.43 16 16 C 0.02 1.18 5.09 29.85 0.15 1.33 16 17 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 21 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 C -0.11 -0.81 6.47 30.62 0.20 -0.61 16 26 C -0.10 -0.86 10.01 30.62 0.31 -0.55 16 27 H 0.06 0.98 7.81 -2.39 -0.02 0.96 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.93 2.67 -2.38 -0.01 0.92 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.91 8.02 -2.39 -0.02 0.89 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.83 3.50 -2.39 -0.01 0.82 16 34 H 0.08 0.92 7.85 -2.38 -0.02 0.90 16 35 H 0.06 1.03 5.82 -2.39 -0.01 1.02 16 36 H 0.42 7.06 7.84 -96.75 -0.76 6.30 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.09 1.78 7.81 -2.39 -0.02 1.77 16 39 H 0.39 8.77 3.26 -93.05 -0.30 8.46 16 40 H 0.40 12.58 8.50 -92.71 -0.79 11.79 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 46 H 0.13 0.75 5.14 -2.39 -0.01 0.73 16 47 H 0.14 0.61 7.75 -2.39 -0.02 0.59 16 48 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -77.56 384.65 -2.24 -79.79 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.85 Total: 29.00 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.52 Total: -3.73 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -4.53 Total: -123.49 kcal Atomic # 8 Polarization: -75.61 SS G_CDS: -4.15 Total: -79.76 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 52.87 SS G_CDS: -0.25 Total: 52.62 kcal Total: -77.56 -2.24 -79.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681311451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.753 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds