Wall clock time and date at job start Wed Apr 1 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47448 * 2 1 4 4 C 1.53003 * 109.47025 * 240.00059 * 2 1 3 5 5 N 1.46494 * 109.47231 * 120.00493 * 2 1 3 6 6 S 1.65606 * 120.00291 * 65.71896 * 5 2 1 7 7 O 1.42108 * 104.27149 * 332.44314 * 6 5 2 8 8 O 1.42100 * 104.27556 * 204.58986 * 6 5 2 9 9 C 1.81395 * 104.45098 * 88.51635 * 6 5 2 10 10 C 1.52997 * 112.85082 * 32.65357 * 9 6 5 11 11 N 1.46502 * 109.46971 * 49.38288 * 10 9 6 12 12 C 1.34781 * 119.99754 * 185.45282 * 11 10 9 13 13 O 1.21588 * 119.99929 * 354.90252 * 12 11 10 14 14 N 1.34770 * 119.99948 * 174.90439 * 12 11 10 15 15 C 1.46499 * 120.00370 * 185.08260 * 14 12 11 16 16 C 1.50696 * 109.47391 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00063 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00033 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00008 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00000 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47435 * 89.99700 * 20 18 16 22 22 H 1.48495 * 109.47505 * 209.99794 * 20 18 16 23 23 H 1.48509 * 109.47152 * 329.99637 * 20 18 16 24 24 C 1.53778 * 113.61545 * 163.85239 * 9 6 5 25 25 C 1.54049 * 86.98904 * 140.01717 * 24 9 6 26 26 C 1.53783 * 113.61301 * 261.45951 * 9 6 5 27 27 H 1.08996 * 109.46955 * 299.99942 * 1 2 3 28 28 H 1.09003 * 109.46921 * 59.99457 * 1 2 3 29 29 H 1.08996 * 109.47534 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47398 * 184.85233 * 3 2 1 31 31 H 1.08996 * 109.47575 * 304.85503 * 3 2 1 32 32 H 1.09006 * 109.46943 * 64.85894 * 3 2 1 33 33 H 1.08999 * 109.47250 * 309.47222 * 4 2 1 34 34 H 1.09004 * 109.46823 * 69.47577 * 4 2 1 35 35 H 1.09005 * 109.47485 * 189.46558 * 4 2 1 36 36 H 0.97003 * 120.00405 * 245.71457 * 5 2 1 37 37 H 1.09002 * 109.47308 * 169.38346 * 10 9 6 38 38 H 1.08999 * 109.47007 * 289.38562 * 10 9 6 39 39 H 0.97001 * 119.99943 * 5.45382 * 11 10 9 40 40 H 0.97007 * 119.99922 * 5.08302 * 14 12 11 41 41 H 1.08996 * 109.47120 * 300.00524 * 15 14 12 42 42 H 1.09009 * 109.46819 * 60.00086 * 15 14 12 43 43 H 0.97000 * 120.00149 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.61699 * 254.61486 * 24 9 6 45 45 H 1.09005 * 113.61316 * 25.51351 * 24 9 6 46 46 H 1.09002 * 113.62017 * 220.02388 * 25 24 9 47 47 H 1.08999 * 113.69065 * 89.12237 * 25 24 9 48 48 H 1.09003 * 113.61590 * 334.48114 * 26 9 6 49 49 H 1.09000 * 113.61883 * 105.29877 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1960 6 16 1.7383 -2.3115 1.3887 7 8 0.5423 -2.5496 0.6590 8 8 1.7908 -2.5115 2.7945 9 6 3.1489 -3.1140 0.5783 10 6 4.4399 -2.3006 0.6903 11 7 4.6463 -1.9016 2.0848 12 6 5.6661 -1.0815 2.4072 13 8 6.4692 -0.7472 1.5577 14 7 5.7957 -0.6321 3.6711 15 6 6.8364 0.3459 3.9978 16 6 6.7679 0.6812 5.4654 17 1 6.0238 0.2123 6.0922 18 6 7.6557 1.5857 6.0081 19 7 7.5962 1.8779 7.2890 20 14 8.9432 2.3960 4.9241 21 1 8.3928 3.6535 4.3574 22 1 10.1492 2.7043 5.7337 23 1 9.3111 1.4745 3.8191 24 6 3.3182 -4.5940 0.9597 25 6 3.6708 -4.8504 -0.5178 26 6 2.8463 -3.5956 -0.8504 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1265 1.4437 -0.0869 31 1 1.6075 1.9808 -0.8432 32 1 1.7495 1.9305 0.9304 33 1 1.5451 -1.6884 -1.3379 34 1 1.8213 -0.1190 -2.1311 35 1 3.1168 -0.8700 -1.1689 36 1 2.5057 -0.1987 1.8753 37 1 5.2819 -2.9078 0.3577 38 1 4.3642 -1.4109 0.0652 39 1 4.0489 -2.2277 2.7760 40 1 5.1998 -0.9562 4.3646 41 1 7.8152 -0.0740 3.7659 42 1 6.6812 1.2513 3.4110 43 1 8.2206 2.5145 7.6707 44 1 4.1456 -4.7764 1.6456 45 1 2.3912 -5.0720 1.2767 46 1 3.2440 -5.7713 -0.9152 47 1 4.7330 -4.7461 -0.7390 48 1 1.7906 -3.8011 -1.0275 49 1 3.2917 -2.9715 -1.6252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681910605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:56 Heat of formation + Delta-G solvation = -80.015089 kcal Electronic energy + Delta-G solvation = -31168.295258 eV Core-core repulsion = 27065.589620 eV Total energy + Delta-G solvation = -4102.705638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.17800 -38.97547 -38.30424 -37.13365 -36.16079 -34.54109 -34.01481 -32.32324 -31.09725 -28.98917 -27.96631 -27.46413 -27.04720 -26.06600 -24.42914 -22.06300 -20.90692 -20.43136 -20.09633 -19.07465 -18.22230 -17.85304 -17.42456 -16.41372 -16.29683 -16.01570 -15.48859 -15.23632 -15.06368 -14.58531 -14.39130 -14.24733 -13.87608 -13.74754 -13.50634 -13.37086 -13.14495 -13.06615 -12.70464 -12.59186 -12.40492 -12.35503 -12.33211 -12.21071 -12.13129 -12.01418 -11.77638 -11.61680 -11.55890 -11.07436 -10.97604 -10.93994 -10.78127 -10.70368 -10.36130 -9.98021 -9.70595 -9.57867 -9.46133 -9.04616 -8.76263 -8.07805 -6.20003 -4.22098 0.04952 2.46960 2.93229 3.26799 3.33997 3.42123 3.52402 3.58555 3.68673 3.82894 4.14177 4.22473 4.32253 4.33970 4.48375 4.66920 4.72826 4.82638 4.90704 5.07081 5.08137 5.15146 5.21254 5.30423 5.36668 5.38145 5.47239 5.48111 5.53324 5.56210 5.60449 5.67025 5.74854 5.85349 5.91139 5.97059 6.12482 6.36165 6.51894 6.68265 6.86951 7.09304 7.18768 7.35156 7.48368 8.26274 8.64237 8.80389 9.11170 9.40292 10.91989 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003374 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.181169 B = 8296.547344 C = 8921.739142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.181 3.819 3 C -0.152 4.152 4 C -0.193 4.193 5 N -1.104 6.104 6 S 2.616 3.384 7 O -0.950 6.950 8 O -0.955 6.955 9 C -0.609 4.609 10 C 0.186 3.814 11 N -0.772 5.772 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.720 5.720 15 C 0.238 3.762 16 C -0.543 4.543 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.107 4.107 25 C -0.127 4.127 26 C -0.103 4.103 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.420 0.580 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.397 0.603 40 H 0.395 0.605 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.267 0.733 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.230 -10.293 -19.482 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.093 3.907 3 C -0.211 4.211 4 C -0.251 4.251 5 N -0.862 5.862 6 S 2.709 3.291 7 O -0.940 6.940 8 O -0.945 6.945 9 C -0.699 4.699 10 C 0.060 3.940 11 N -0.433 5.433 12 C 0.399 3.601 13 O -0.478 6.478 14 N -0.372 5.372 15 C 0.116 3.884 16 C -0.581 4.581 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.146 4.146 25 C -0.165 4.165 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.233 0.767 40 H 0.229 0.771 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.125 0.875 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.222 -10.275 -19.781 26.441 hybrid contribution 1.006 0.529 0.342 1.187 sum -13.216 -9.746 -19.440 25.447 Atomic orbital electron populations 1.22755 0.94028 1.05741 1.02139 1.20063 0.94063 0.93184 0.83363 1.22080 1.02121 0.93952 1.02913 1.22819 1.02159 1.02099 0.98038 1.55647 1.72563 1.26933 1.31091 1.04985 0.75926 0.73653 0.74556 1.93498 1.41159 1.84705 1.74626 1.93598 1.87282 1.84792 1.28809 1.32017 1.17580 1.08400 1.11926 1.20535 0.92499 0.97681 0.83282 1.45481 1.34518 1.54202 1.09114 1.15991 0.81146 0.78994 0.83969 1.90873 1.44029 1.63605 1.49296 1.45452 1.38126 1.46589 1.07082 1.19383 0.86110 0.86488 0.96438 1.21102 1.18880 1.26468 0.91649 0.90178 1.24778 0.97018 0.95815 0.94967 1.69882 1.37451 1.34028 1.11585 0.86821 0.81388 0.80484 0.80986 1.19902 1.20953 1.18474 1.22714 1.03624 0.88942 0.99272 1.22838 1.01077 0.97875 0.94750 1.22830 1.02352 0.97821 0.91159 0.92354 0.91783 0.88144 0.91520 0.91159 0.91670 0.90894 0.90319 0.91103 0.74554 0.90211 0.89587 0.76710 0.77130 0.95778 0.96364 0.92277 0.88880 0.89275 0.90432 0.89065 0.87541 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.42 37.15 0.31 -1.45 16 2 C 0.18 1.66 1.06 -131.83 -0.14 1.52 16 3 C -0.15 -1.33 8.58 37.16 0.32 -1.01 16 4 C -0.19 -1.45 6.57 37.16 0.24 -1.21 16 5 N -1.10 -11.54 4.48 0.53 0.00 -11.54 16 6 S 2.62 28.80 4.30 -107.50 -0.46 28.34 16 7 O -0.95 -11.32 12.23 -57.54 -0.70 -12.02 16 8 O -0.95 -13.56 16.60 -57.54 -0.96 -14.51 16 9 C -0.61 -5.34 0.59 -89.81 -0.05 -5.39 16 10 C 0.19 2.03 4.41 -4.04 -0.02 2.01 16 11 N -0.77 -10.66 4.99 -65.23 -0.33 -10.98 16 12 C 0.70 13.13 8.55 -86.92 -0.74 12.39 16 13 O -0.60 -13.27 16.36 5.29 0.09 -13.19 16 14 N -0.72 -14.63 5.55 -66.42 -0.37 -15.00 16 15 C 0.24 5.83 4.50 -5.20 -0.02 5.81 16 16 C -0.54 -14.88 9.83 -34.44 -0.34 -15.22 16 17 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 20 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.11 -0.82 7.25 -25.78 -0.19 -1.01 16 25 C -0.13 -0.78 7.74 -25.78 -0.20 -0.98 16 26 C -0.10 -0.67 4.78 -25.92 -0.12 -0.79 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.09 5.12 -51.93 -0.27 0.82 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.52 4.71 -51.93 -0.24 0.28 16 34 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 0.52 5.21 -51.93 -0.27 0.25 16 36 H 0.42 4.62 8.59 -34.47 -0.30 4.32 16 37 H 0.08 0.89 7.34 -51.93 -0.38 0.51 16 38 H 0.09 0.93 5.99 -51.93 -0.31 0.62 16 39 H 0.40 5.16 6.57 -40.82 -0.27 4.89 16 40 H 0.40 7.31 8.34 -40.82 -0.34 6.97 16 41 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 42 H 0.02 0.46 7.57 -51.92 -0.39 0.07 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.56 7.65 -51.93 -0.40 0.16 16 48 H 0.11 0.65 7.02 -51.93 -0.36 0.29 16 49 H 0.09 0.49 6.93 -51.93 -0.36 0.13 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -34.60 382.01 -9.56 -44.16 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.64 Total: 11.29 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.05 Total: -3.24 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.08 Total: -63.24 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.57 Total: -39.72 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 28.80 SS G_CDS: -0.46 Total: 28.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.60 -9.56 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.855 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds